Wall clock time and date at job start Tue Mar 31 2020 02:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32484 * 120.37289 * 2 1 4 4 C 1.32293 * 120.90580 * 180.02562 * 3 2 1 5 5 O 1.35453 * 119.16674 * 179.97438 * 4 3 2 6 6 N 1.32307 * 121.66959 * 0.02562 * 4 3 2 7 7 C 1.32758 * 120.65894 * 359.97438 * 6 4 3 8 8 O 1.35515 * 120.47555 * 179.97438 * 7 6 4 9 9 C 1.42900 * 116.99970 * 0.02617 * 8 7 6 10 10 H 1.09003 * 110.64667 * 31.68613 * 9 8 7 11 11 C 1.55161 * 110.72062 * 155.02392 * 9 8 7 12 12 C 1.54909 * 101.58315 * 153.86168 * 11 9 8 13 13 N 1.47427 * 104.83235 * 322.99279 * 12 11 9 14 14 C 1.36935 * 125.64620 * 204.09632 * 13 12 11 15 15 H 1.08007 * 119.99739 * 180.02562 * 14 13 12 16 16 C 1.38814 * 120.00285 * 0.03485 * 14 13 12 17 17 N 1.31621 * 119.99837 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00165 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47049 * 89.99735 * 18 16 14 20 20 H 1.48498 * 109.47039 * 210.00292 * 18 16 14 21 21 H 1.48500 * 109.47176 * 329.99856 * 18 16 14 22 22 C 1.47025 * 108.70446 * 24.12611 * 13 12 11 23 23 C 1.38184 * 120.38090 * 180.02562 * 2 1 3 24 24 C 1.50703 * 120.76079 * 359.95805 * 23 2 1 25 25 H 1.08997 * 109.47720 * 90.00129 * 1 2 3 26 26 H 1.09008 * 109.47328 * 210.00324 * 1 2 3 27 27 H 1.08998 * 109.47406 * 329.99560 * 1 2 3 28 28 H 0.96702 * 114.00198 * 90.00180 * 5 4 3 29 29 H 1.09001 * 110.99857 * 271.93653 * 11 9 8 30 30 H 1.08994 * 111.00431 * 35.78732 * 11 9 8 31 31 H 1.08994 * 110.37054 * 204.15199 * 12 11 9 32 32 H 1.09001 * 110.45743 * 81.87037 * 12 11 9 33 33 H 0.96998 * 119.99871 * 179.97438 * 17 16 14 34 34 H 1.09007 * 109.87937 * 239.52775 * 22 13 12 35 35 H 1.08999 * 110.00767 * 118.43492 * 22 13 12 36 36 H 1.09004 * 109.47386 * 90.00090 * 24 23 2 37 37 H 1.09003 * 109.46633 * 209.99890 * 24 23 2 38 38 H 1.09001 * 109.47147 * 329.99771 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1768 1.1430 0.0000 4 6 3.4997 1.1553 -0.0005 5 8 4.1488 2.3442 -0.0010 6 7 4.2048 0.0358 -0.0015 7 6 3.5992 -1.1456 -0.0016 8 8 4.3251 -2.2900 -0.0032 9 6 5.7477 -2.1559 -0.0042 10 1 6.0493 -1.2561 0.5322 11 6 6.4183 -3.4146 0.6070 12 6 7.8061 -3.3926 -0.0808 13 7 7.5407 -2.9186 -1.4513 14 6 8.3260 -3.1625 -2.5462 15 1 8.0440 -2.7687 -3.5116 16 6 9.4844 -3.9161 -2.4156 17 7 9.8283 -4.3957 -1.2391 18 14 10.5561 -4.2483 -3.9091 19 1 11.5688 -3.1703 -4.0413 20 1 11.2424 -5.5549 -3.7451 21 1 9.7089 -4.2838 -5.1282 22 6 6.2936 -2.1399 -1.4476 23 6 2.2058 -1.1921 -0.0005 24 6 1.4785 -2.5120 -0.0002 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5139 28 1 4.3377 2.6896 0.8822 29 1 6.5165 -3.3188 1.6883 30 1 5.8666 -4.3173 0.3448 31 1 8.2348 -4.3945 -0.1023 32 1 8.4762 -2.7050 0.4353 33 1 10.6376 -4.9226 -1.1478 34 1 5.5697 -2.5962 -2.1228 35 1 6.4936 -1.1140 -1.7570 36 1 1.3024 -2.8302 -1.0278 37 1 2.0830 -3.2597 0.5132 38 1 0.5240 -2.4007 0.5143 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226982487.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:58 Heat of formation + Delta-G solvation = -24.515102 kcal Electronic energy + Delta-G solvation = -21850.050360 eV Core-core repulsion = 18500.517142 eV Total energy + Delta-G solvation = -3349.533218 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.54538 -40.44390 -38.72657 -37.97022 -35.25934 -34.53273 -33.64195 -31.25780 -30.14595 -29.11733 -27.70294 -26.55855 -24.18464 -23.75369 -22.21393 -21.99043 -20.20380 -19.50883 -18.90802 -18.56603 -17.20192 -16.99165 -16.62035 -15.94566 -15.67120 -15.52741 -15.05715 -14.85547 -14.45437 -14.33985 -13.83623 -13.70883 -13.61528 -13.53935 -13.25647 -13.00740 -12.95425 -12.76045 -12.66264 -12.31995 -12.09822 -12.03823 -11.99907 -11.82183 -11.47806 -11.08525 -10.81555 -10.39990 -9.78548 -9.00481 -7.84417 -5.30586 -0.29542 -0.01208 1.44971 1.47318 1.55801 1.64003 2.01727 2.45776 2.48836 2.97011 3.26416 3.52060 3.61223 3.64031 3.81816 3.89148 3.97523 4.07534 4.20106 4.49312 4.61200 4.64107 4.72152 4.74879 4.80120 4.87439 4.89926 4.97905 5.06263 5.16548 5.37693 5.46989 5.50752 5.67827 5.74044 5.98314 6.22218 6.51073 6.88888 7.03017 7.66698 8.29997 9.17984 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.027512 B = 0.004024 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.494380 B = 6956.275906 C = 7295.688349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.210 3.790 3 N -0.557 5.557 4 C 0.516 3.484 5 O -0.466 6.466 6 N -0.607 5.607 7 C 0.364 3.636 8 O -0.283 6.283 9 C 0.095 3.905 10 H 0.092 0.908 11 C -0.120 4.120 12 C 0.156 3.844 13 N -0.622 5.622 14 C -0.250 4.250 15 H 0.076 0.924 16 C -0.059 4.059 17 N -0.945 5.945 18 Si 0.985 3.015 19 H -0.286 1.286 20 H -0.286 1.286 21 H -0.271 1.271 22 C 0.127 3.873 23 C -0.220 4.220 24 C -0.094 4.094 25 H 0.103 0.897 26 H 0.114 0.886 27 H 0.091 0.909 28 H 0.430 0.570 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.087 0.913 32 H -0.003 1.003 33 H 0.252 0.748 34 H 0.023 0.977 35 H 0.017 0.983 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.264 6.480 7.170 22.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.068 3.932 3 N -0.288 5.288 4 C 0.211 3.789 5 O -0.273 6.273 6 N -0.349 5.349 7 C 0.178 3.822 8 O -0.187 6.187 9 C 0.038 3.962 10 H 0.110 0.890 11 C -0.158 4.158 12 C 0.031 3.969 13 N -0.349 5.349 14 C -0.378 4.378 15 H 0.094 0.906 16 C -0.252 4.252 17 N -0.594 5.594 18 Si 0.812 3.188 19 H -0.212 1.212 20 H -0.212 1.212 21 H -0.196 1.196 22 C 0.001 3.999 23 C -0.225 4.225 24 C -0.151 4.151 25 H 0.122 0.878 26 H 0.132 0.868 27 H 0.110 0.890 28 H 0.293 0.707 29 H 0.118 0.882 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.015 0.985 33 H 0.061 0.939 34 H 0.041 0.959 35 H 0.035 0.965 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -19.631 6.961 6.533 21.829 hybrid contribution 1.289 -0.299 -0.389 1.379 sum -18.343 6.661 6.143 20.459 Atomic orbital electron populations 1.21024 0.83516 1.05970 1.05370 1.21972 0.99249 0.84814 0.87192 1.67941 1.08068 1.32003 1.20757 1.19932 0.84274 0.84502 0.90177 1.84673 1.76244 1.30184 1.36176 1.67467 1.43977 0.99251 1.24228 1.20144 0.89715 0.84169 0.88164 1.86299 1.20475 1.26120 1.85760 1.23291 0.75802 1.00777 0.96324 0.88957 1.23060 0.96163 0.95962 1.00600 1.21800 0.91833 1.00687 0.82584 1.44655 1.23820 1.60381 1.06051 1.19417 1.02653 1.27732 0.88014 0.90618 1.25646 0.99254 1.00099 1.00183 1.69980 1.25960 1.40516 1.22973 0.84994 0.78331 0.77042 0.78407 1.21248 1.21227 1.19625 1.21584 0.88783 0.94099 0.95429 1.20970 0.90086 1.00778 1.10701 1.20671 1.00571 0.90150 1.03726 0.87823 0.86781 0.89011 0.70683 0.88230 0.90280 0.89467 0.98458 0.93855 0.95893 0.96548 0.90103 0.91470 0.87376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.08 9.83 71.23 0.70 -0.38 16 2 C 0.21 4.50 6.81 42.45 0.29 4.79 16 3 N -0.56 -14.79 10.40 -301.74 -3.14 -17.92 16 4 C 0.52 15.46 8.71 180.58 1.57 17.03 16 5 O -0.47 -12.09 13.64 -87.50 -1.19 -13.28 16 6 N -0.61 -20.58 8.89 -426.36 -3.79 -24.37 16 7 C 0.36 11.56 7.50 84.84 0.64 12.19 16 8 O -0.28 -9.77 9.03 -88.17 -0.80 -10.56 16 9 C 0.09 3.69 3.16 31.79 0.10 3.79 16 10 H 0.09 3.61 7.16 -2.39 -0.02 3.60 16 11 C -0.12 -4.60 6.81 31.99 0.22 -4.39 16 12 C 0.16 7.84 5.89 86.85 0.51 8.35 16 13 N -0.62 -34.04 3.39 -691.96 -2.35 -36.39 16 14 C -0.25 -14.65 10.27 84.03 0.86 -13.78 16 15 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 16 C -0.06 -3.39 5.49 84.86 0.47 -2.92 16 17 N -0.95 -56.26 10.09 21.65 0.22 -56.04 16 18 Si 0.98 46.24 29.55 68.60 2.03 48.27 16 19 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 20 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 C 0.13 5.98 7.02 86.73 0.61 6.59 16 23 C -0.22 -5.26 5.93 -19.59 -0.12 -5.37 16 24 C -0.09 -1.54 9.46 71.24 0.67 -0.87 16 25 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.11 0.60 6.06 -2.38 -0.01 0.58 16 27 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.43 6.19 9.06 -74.06 -0.67 5.52 16 29 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 30 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 31 H 0.09 4.88 5.87 -2.39 -0.01 4.87 16 32 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 33 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 34 H 0.02 1.10 8.06 -2.38 -0.02 1.08 16 35 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.07 1.26 7.63 -2.39 -0.02 1.24 16 38 H 0.11 0.96 6.07 -2.39 -0.01 0.95 16 Total: -1.00 -74.24 316.24 -2.07 -76.32 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: 0.42 Total: 8.97 kcal Atomic # 6 Polarization: 18.50 SS G_CDS: 6.52 Total: 25.02 kcal Atomic # 7 Polarization: -125.67 SS G_CDS: -9.06 Total: -134.73 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -1.99 Total: -23.85 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -74.24 -2.07 -76.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226982487.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.800 kcal (2) G-P(sol) polarization free energy of solvation -74.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds