Wall clock time and date at job start Tue Mar 31 2020 01:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38518 * 121.01247 * 2 1 4 4 C 1.50703 * 121.01691 * 0.02562 * 3 2 1 5 5 C 1.39312 * 117.96953 * 179.72582 * 3 2 1 6 6 O 1.35773 * 120.08253 * 180.25345 * 5 3 2 7 7 C 1.42896 * 117.00653 * 180.02562 * 6 5 3 8 8 C 1.53930 * 113.73448 * 248.76660 * 7 6 5 9 9 N 1.48183 * 86.10085 * 221.95468 * 8 7 6 10 10 C 1.46900 * 111.07009 * 137.52380 * 9 8 7 11 11 C 1.50698 * 109.47538 * 70.56725 * 10 9 8 12 12 H 1.07998 * 119.99816 * 359.97438 * 11 10 9 13 13 C 1.37873 * 120.00114 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00497 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99954 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47550 * 89.99570 * 15 13 11 17 17 H 1.48494 * 109.47335 * 210.00133 * 15 13 11 18 18 H 1.48507 * 109.47032 * 329.99678 * 15 13 11 19 19 C 1.47956 * 90.80216 * 24.59965 * 9 8 7 20 20 N 1.32213 * 119.84467 * 0.27785 * 5 3 2 21 21 N 1.28339 * 122.18439 * 359.97438 * 20 5 3 22 22 C 1.32207 * 122.18707 * 0.02562 * 21 20 5 23 23 O 1.35772 * 120.07665 * 180.02562 * 22 21 20 24 24 H 1.08998 * 109.47315 * 90.00163 * 1 2 3 25 25 H 1.09000 * 109.46453 * 209.99459 * 1 2 3 26 26 H 1.08994 * 109.47321 * 329.99531 * 1 2 3 27 27 H 1.09002 * 109.47152 * 269.71759 * 4 3 2 28 28 H 1.09001 * 109.46980 * 149.71860 * 4 3 2 29 29 H 1.09004 * 109.47113 * 29.71840 * 4 3 2 30 30 H 1.09007 * 112.93270 * 20.33660 * 7 6 5 31 31 H 1.08999 * 113.76071 * 336.23971 * 8 7 6 32 32 H 1.08999 * 113.75957 * 107.60111 * 8 7 6 33 33 H 1.09004 * 109.46765 * 190.56673 * 10 9 8 34 34 H 1.08995 * 109.46846 * 310.56414 * 10 9 8 35 35 H 0.96995 * 120.00302 * 179.97438 * 14 13 11 36 36 H 1.08997 * 113.76376 * 221.08384 * 19 9 8 37 37 H 1.09005 * 113.76080 * 89.71523 * 19 9 8 38 38 H 0.96705 * 114.00283 * 90.00160 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2207 1.1872 0.0000 4 6 1.5138 2.5182 0.0006 5 6 3.6118 1.1132 0.0059 6 8 4.3538 2.2503 0.0113 7 6 5.7746 2.0980 0.0166 8 6 6.4398 2.5365 1.3337 9 7 7.4811 3.1589 0.4827 10 6 7.8534 4.4864 0.9896 11 6 8.6241 4.3352 2.2757 12 1 8.8177 3.3513 2.6767 13 6 9.0813 5.4529 2.9410 14 7 8.8452 6.6512 2.4531 15 14 10.0360 5.2654 4.5356 16 1 11.4861 5.1568 4.2346 17 1 9.7969 6.4504 5.3980 18 1 9.5840 4.0399 5.2421 19 6 6.5258 3.2693 -0.6416 20 7 4.2080 -0.0669 0.0057 21 7 3.5467 -1.1668 0.0007 22 6 2.2250 -1.1939 -0.0051 23 8 1.5688 -2.3825 -0.0098 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3632 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.3475 2.8417 -1.0269 28 1 2.1274 3.2552 0.5187 29 1 0.5554 2.4203 0.5104 30 1 6.0980 1.1175 -0.3332 31 1 5.8519 3.2551 1.9046 32 1 6.8041 1.7066 1.9392 33 1 8.4736 4.9961 0.2522 34 1 6.9520 5.0712 1.1728 35 1 9.1665 7.4375 2.9213 36 1 6.9586 3.0239 -1.6114 37 1 5.9630 4.2028 -0.6497 38 1 1.3748 -2.7281 0.8723 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228153134.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:52 Heat of formation + Delta-G solvation = 16.810167 kcal Electronic energy + Delta-G solvation = -21363.144291 eV Core-core repulsion = 18015.403071 eV Total energy + Delta-G solvation = -3347.741220 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 4.55 seconds Orbital eigenvalues (eV) -41.60425 -39.70509 -38.05603 -36.84129 -35.48510 -32.89946 -31.34710 -29.31332 -29.18887 -27.67452 -25.76013 -25.19092 -23.24978 -22.97809 -21.44730 -19.68840 -18.91965 -18.44344 -17.77063 -16.55084 -16.32355 -15.50889 -15.25775 -14.78306 -14.35325 -14.25264 -13.93431 -13.73365 -13.56455 -13.18065 -12.87462 -12.76215 -12.65051 -12.31397 -12.12432 -12.10147 -11.96129 -11.59677 -11.50863 -10.95448 -10.68185 -10.33445 -10.31771 -9.81769 -9.74191 -9.51307 -9.20586 -8.85904 -8.52321 -7.90306 -6.08060 -4.10134 0.48699 0.74229 2.80184 3.10111 3.30266 3.36003 3.39198 3.40150 3.95495 4.25216 4.37353 4.40630 4.53472 4.66946 4.81360 4.85469 5.04893 5.10730 5.28068 5.30222 5.34882 5.42024 5.54370 5.61758 5.70812 5.78569 5.97682 6.01804 6.10575 6.29166 6.38825 6.59136 7.05231 7.14234 7.22993 7.57675 7.82374 8.04263 8.35937 8.52674 8.97025 9.54567 11.03202 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.029783 B = 0.003392 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.905105 B = 8252.069470 C = 8417.954938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.078 4.078 3 C -0.094 4.094 4 C -0.110 4.110 5 C 0.272 3.728 6 O -0.284 6.284 7 C 0.045 3.955 8 C 0.013 3.987 9 N -0.470 5.470 10 C 0.163 3.837 11 C -0.512 4.512 12 H 0.063 0.937 13 C 0.057 3.943 14 N -0.898 5.898 15 Si 0.900 3.100 16 H -0.279 1.279 17 H -0.287 1.287 18 H -0.273 1.273 19 C 0.005 3.995 20 N -0.277 5.277 21 N -0.221 5.221 22 C 0.218 3.782 23 O -0.470 6.470 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.120 0.880 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.036 0.964 34 H 0.001 0.999 35 H 0.262 0.738 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.566 -11.585 -4.712 23.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.090 4.090 3 C -0.105 4.105 4 C -0.166 4.166 5 C 0.086 3.914 6 O -0.187 6.187 7 C -0.011 4.011 8 C -0.116 4.116 9 N -0.195 5.195 10 C 0.037 3.963 11 C -0.551 4.551 12 H 0.081 0.919 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.727 3.273 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.124 4.124 20 N -0.136 5.136 21 N -0.073 5.073 22 C 0.028 3.972 23 O -0.275 6.275 24 H 0.103 0.897 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.138 0.862 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.054 0.946 34 H 0.019 0.981 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -17.560 -12.189 -5.361 22.037 hybrid contribution -1.256 1.085 1.517 2.248 sum -18.815 -11.103 -3.844 22.183 Atomic orbital electron populations 1.20741 0.88377 1.03783 1.03640 1.21051 0.98709 0.91370 0.97822 1.20245 0.90805 0.97430 1.02057 1.20752 1.00261 0.92128 1.03503 1.21431 0.89781 0.88241 0.91953 1.86407 1.21409 1.25122 1.85743 1.25134 0.74320 1.01858 0.99780 1.24223 0.92698 0.99918 0.94762 1.68641 1.24248 1.23428 1.03224 1.20228 0.95970 0.83920 0.96156 1.21087 1.34628 0.93063 1.06281 0.91885 1.24987 0.96282 0.95122 0.98102 1.69951 1.46419 0.97627 1.39686 0.86470 0.80295 0.77560 0.82952 1.20507 1.21244 1.19807 1.24238 0.93253 0.96566 0.98347 1.73027 1.29781 0.93812 1.16980 1.72629 1.06734 1.18960 1.08935 1.20509 0.89112 0.85959 1.01571 1.84842 1.74822 1.33950 1.33865 0.89711 0.90394 0.90173 0.89974 0.89678 0.90468 0.86184 0.90616 0.89544 0.94634 0.98102 0.92824 0.89254 0.90842 0.74487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 9.49 36.01 0.34 -0.31 16 2 C -0.08 -0.79 5.94 -104.12 -0.62 -1.40 16 3 C -0.09 -1.08 5.94 -104.12 -0.62 -1.70 16 4 C -0.11 -0.95 9.50 36.01 0.34 -0.61 16 5 C 0.27 4.01 7.55 -16.99 -0.13 3.88 16 6 O -0.28 -4.51 9.32 -19.03 -0.18 -4.68 16 7 C 0.05 0.78 4.34 -25.80 -0.11 0.66 16 8 C 0.01 0.26 7.32 -2.64 -0.02 0.24 16 9 N -0.47 -10.37 6.25 -239.80 -1.50 -11.87 16 10 C 0.16 4.27 4.58 -4.98 -0.02 4.25 16 11 C -0.51 -14.54 8.84 -34.44 -0.30 -14.84 16 12 H 0.06 1.78 7.80 -52.49 -0.41 1.37 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 15 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 C 0.00 0.09 7.81 -2.76 -0.02 0.07 16 20 N -0.28 -4.45 9.79 30.50 0.30 -4.16 16 21 N -0.22 -3.33 11.52 30.50 0.35 -2.97 16 22 C 0.22 2.57 7.83 -16.99 -0.13 2.43 16 23 O -0.47 -4.27 12.75 -19.03 -0.24 -4.52 16 24 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.08 0.36 7.63 -51.93 -0.40 -0.04 16 26 H 0.08 0.37 6.16 -51.93 -0.32 0.05 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.85 7.62 -51.93 -0.40 0.45 16 29 H 0.08 0.48 6.15 -51.93 -0.32 0.16 16 30 H 0.12 2.05 6.94 -51.93 -0.36 1.68 16 31 H 0.08 1.57 7.79 -51.93 -0.40 1.16 16 32 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 33 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.00 0.03 7.70 -51.93 -0.40 -0.37 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 37 H 0.07 1.33 7.79 -51.93 -0.40 0.92 16 38 H 0.40 1.60 9.06 45.56 0.41 2.01 16 LS Contribution 322.04 15.07 4.85 4.85 Total: -1.00 -33.28 322.04 -6.34 -39.61 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -4.25 Total: -1.28 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -1.39 Total: -5.81 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: -0.11 Total: -44.90 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.42 Total: -9.20 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.28 -6.34 -39.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228153134.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.424 kcal (2) G-P(sol) polarization free energy of solvation -33.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.55 seconds