Wall clock time and date at job start Tue Mar 31 2020 02:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31766 * 119.06914 * 2 1 4 4 C 1.32955 * 120.86680 * 179.97438 * 3 2 1 5 5 O 1.35539 * 120.47501 * 180.02562 * 4 3 2 6 6 C 1.39023 * 119.04742 * 0.02562 * 4 3 2 7 7 C 1.50700 * 120.85225 * 180.02562 * 6 4 3 8 8 C 1.38994 * 118.30525 * 359.97438 * 6 4 3 9 9 O 1.35538 * 120.47935 * 180.02562 * 8 6 4 10 10 C 1.42894 * 116.99979 * 179.97438 * 9 8 6 11 11 H 1.09004 * 110.91581 * 333.89824 * 10 9 8 12 12 C 1.55153 * 111.00595 * 209.99366 * 10 9 8 13 13 C 1.54327 * 102.94777 * 206.42447 * 12 10 9 14 14 N 1.47023 * 107.26634 * 22.19238 * 13 12 10 15 15 C 1.36942 * 125.64451 * 181.02675 * 14 13 12 16 16 H 1.08001 * 119.99608 * 185.84961 * 15 14 13 17 17 C 1.38811 * 119.99859 * 5.83909 * 15 14 13 18 18 N 1.31619 * 119.99898 * 7.32562 * 17 15 14 19 19 Si 1.86798 * 119.99526 * 187.31977 * 17 15 14 20 20 H 1.48502 * 109.47424 * 265.01587 * 19 17 15 21 21 H 1.48507 * 109.46922 * 145.01666 * 19 17 15 22 22 H 1.48500 * 109.47468 * 25.02234 * 19 17 15 23 23 C 1.47421 * 108.70689 * 1.28873 * 14 13 12 24 24 N 1.31751 * 119.06181 * 180.27582 * 2 1 3 25 25 H 1.09000 * 109.46681 * 89.99694 * 1 2 3 26 26 H 1.09000 * 109.46972 * 209.99913 * 1 2 3 27 27 H 1.09003 * 109.46640 * 329.99950 * 1 2 3 28 28 H 0.96697 * 114.00177 * 269.97598 * 5 4 3 29 29 H 1.08997 * 109.47502 * 269.98220 * 7 6 4 30 30 H 1.09008 * 109.46821 * 29.97827 * 7 6 4 31 31 H 1.09000 * 109.47453 * 149.97668 * 7 6 4 32 32 H 1.09001 * 110.72119 * 88.05768 * 12 10 9 33 33 H 1.09002 * 110.72267 * 324.79134 * 12 10 9 34 34 H 1.08995 * 109.87769 * 262.77669 * 13 12 10 35 35 H 1.08994 * 109.88662 * 141.60966 * 13 12 10 36 36 H 0.97007 * 119.99060 * 179.97438 * 18 17 15 37 37 H 1.08997 * 110.36765 * 94.48217 * 23 14 13 38 38 H 1.09001 * 110.36963 * 216.80734 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1472 1.1517 0.0000 4 6 3.4761 1.1934 0.0005 5 8 4.1266 2.3825 0.0010 6 6 4.1889 -0.0002 0.0005 7 6 5.6959 -0.0004 0.0017 8 6 3.4762 -1.1935 0.0005 9 8 4.1265 -2.3827 0.0010 10 6 3.3206 -3.5627 0.0016 11 1 2.3461 -3.3682 0.4495 12 6 4.0429 -4.7291 0.7261 13 6 3.4258 -5.9807 0.0670 14 7 2.8916 -5.5676 -1.2389 15 6 2.2438 -6.3813 -2.1298 16 1 1.9713 -6.0055 -3.1049 17 6 1.9376 -7.6891 -1.7794 18 7 2.1379 -8.1042 -0.5465 19 14 1.2410 -8.8597 -3.0576 20 1 -0.2414 -8.8636 -2.9697 21 1 1.7553 -10.2300 -2.8063 22 1 1.6554 -8.4164 -4.4129 23 6 3.1743 -4.1339 -1.4334 24 7 2.1470 -1.1516 -0.0055 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 4.3160 2.7276 -0.8822 29 1 6.0601 -0.0003 -1.0257 30 1 6.0590 0.8896 0.5159 31 1 6.0588 -0.8904 0.5157 32 1 3.8289 -4.7108 1.7948 33 1 5.1172 -4.6886 0.5463 34 1 2.6208 -6.3692 0.6908 35 1 4.1922 -6.7434 -0.0704 36 1 1.9235 -9.0181 -0.3017 37 1 4.1005 -4.0024 -1.9928 38 1 2.3457 -3.6506 -1.9510 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229684992.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:51 Heat of formation + Delta-G solvation = -2.144853 kcal Electronic energy + Delta-G solvation = -21848.142647 eV Core-core repulsion = 18499.579476 eV Total energy + Delta-G solvation = -3348.563171 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.42956 -39.06081 -37.72185 -36.46666 -33.59882 -32.63705 -32.11375 -30.24063 -29.31834 -27.45005 -25.82067 -24.77863 -23.65480 -22.23310 -20.71593 -20.18632 -19.10323 -18.26324 -17.30688 -16.86977 -16.16255 -15.03158 -14.82434 -14.57085 -14.40741 -14.32375 -13.86473 -13.60424 -13.25710 -12.94247 -12.64348 -12.48023 -12.34634 -12.26792 -12.06648 -11.97992 -11.74173 -10.96793 -10.84828 -10.66108 -10.53693 -10.36286 -10.12694 -9.91897 -9.85204 -9.68863 -9.36440 -8.73728 -8.66157 -6.89198 -5.74444 -3.11578 0.74088 1.07249 2.81549 3.33171 3.38433 3.43934 3.46165 3.61016 3.87645 4.44724 4.57440 4.73240 4.84519 5.15647 5.22715 5.37160 5.46545 5.49364 5.53738 5.55862 5.60707 5.69782 5.73749 5.80548 6.02296 6.05556 6.23060 6.35998 6.40116 6.55801 6.62264 6.84768 7.17680 7.37028 7.40634 7.58489 7.75865 8.04668 8.20456 9.15346 9.75909 10.40402 11.35108 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.027203 B = 0.004111 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.055295 B = 6808.666891 C = 7337.434899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.373 3.627 3 N -0.564 5.564 4 C 0.379 3.621 5 O -0.471 6.471 6 C -0.239 4.239 7 C -0.091 4.091 8 C 0.388 3.612 9 O -0.284 6.284 10 C 0.068 3.932 11 H 0.102 0.898 12 C -0.139 4.139 13 C 0.173 3.827 14 N -0.599 5.599 15 C -0.230 4.230 16 H 0.079 0.921 17 C -0.006 4.006 18 N -0.920 5.920 19 Si 0.913 3.087 20 H -0.288 1.288 21 H -0.289 1.289 22 H -0.281 1.281 23 C 0.128 3.872 24 N -0.569 5.569 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.406 0.594 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.036 0.964 36 H 0.253 0.747 37 H 0.026 0.974 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.131 17.626 1.818 17.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.106 3.894 3 N -0.294 5.294 4 C 0.195 3.805 5 O -0.279 6.279 6 C -0.246 4.246 7 C -0.149 4.149 8 C 0.202 3.798 9 O -0.186 6.186 10 C 0.011 3.989 11 H 0.120 0.880 12 C -0.177 4.177 13 C 0.049 3.951 14 N -0.327 5.327 15 C -0.358 4.358 16 H 0.096 0.904 17 C -0.203 4.203 18 N -0.567 5.567 19 Si 0.744 3.256 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.206 1.206 23 C 0.001 3.999 24 N -0.300 5.300 25 H 0.108 0.892 26 H 0.109 0.891 27 H 0.105 0.895 28 H 0.265 0.735 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.044 0.956 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.462 17.247 2.407 17.587 hybrid contribution 0.480 -0.611 -1.102 1.348 sum 2.942 16.636 1.305 16.944 Atomic orbital electron populations 1.20622 0.85131 1.04376 1.04252 1.22708 0.97623 0.81213 0.87862 1.67807 1.09378 1.31332 1.20870 1.18847 0.86408 0.84752 0.90532 1.84672 1.75167 1.33916 1.34122 1.20720 0.99563 0.90690 1.13665 1.20397 0.88364 1.03530 1.02599 1.19818 0.86992 0.86860 0.86148 1.86256 1.35576 1.11932 1.84884 1.24068 0.94920 0.80183 0.99711 0.88040 1.23087 1.00239 0.95083 0.99291 1.21271 0.97078 0.90326 0.86445 1.44319 1.66787 1.03074 1.18510 1.19052 1.30315 0.92229 0.94194 0.90360 1.24818 1.01165 0.97617 0.96664 1.69937 1.53623 1.16938 1.16189 0.86081 0.78593 0.80479 0.80487 1.21537 1.21568 1.20605 1.21833 0.98388 0.86910 0.92762 1.68029 1.08399 1.31468 1.22128 0.89229 0.89125 0.89493 0.73505 0.91180 0.90902 0.90564 0.91353 0.91338 0.91329 0.94613 0.93651 0.95641 0.93688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.90 10.32 36.01 0.37 -0.53 16 2 C 0.37 5.33 7.64 -157.25 -1.20 4.12 16 3 N -0.56 -7.96 10.36 -10.84 -0.11 -8.07 16 4 C 0.38 4.93 7.80 -16.77 -0.13 4.80 16 5 O -0.47 -4.69 12.74 -18.31 -0.23 -4.92 16 6 C -0.24 -3.26 5.94 -104.05 -0.62 -3.88 16 7 C -0.09 -0.98 9.65 36.01 0.35 -0.63 16 8 C 0.39 6.27 7.49 -16.77 -0.13 6.14 16 9 O -0.28 -4.90 9.11 -18.31 -0.17 -5.07 16 10 C 0.07 1.29 3.38 -24.46 -0.08 1.21 16 11 H 0.10 2.01 6.99 -51.93 -0.36 1.65 16 12 C -0.14 -2.66 6.68 -24.90 -0.17 -2.82 16 13 C 0.17 4.20 5.45 -3.06 -0.02 4.19 16 14 N -0.60 -15.53 3.39 -169.93 -0.58 -16.10 16 15 C -0.23 -6.44 10.26 -15.06 -0.15 -6.59 16 16 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 17 C -0.01 -0.17 5.45 -17.43 -0.09 -0.27 16 18 N -0.92 -26.76 10.46 55.49 0.58 -26.18 16 19 Si 0.91 21.98 29.56 -169.99 -5.02 16.95 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C 0.13 2.79 6.98 -2.41 -0.02 2.78 16 24 N -0.57 -9.29 8.68 -10.85 -0.09 -9.39 16 25 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.41 1.91 9.06 45.56 0.41 2.33 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.68 7.63 -51.92 -0.40 0.28 16 31 H 0.08 0.87 7.62 -51.93 -0.40 0.48 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.07 1.83 6.88 -51.93 -0.36 1.47 16 35 H 0.04 0.93 7.98 -51.93 -0.41 0.52 16 36 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 320.10 15.07 4.82 4.82 Total: -1.00 -32.58 320.10 -7.13 -39.71 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -4.44 Total: -0.27 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: -1.89 Total: 8.51 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: -0.20 Total: -59.74 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: -0.40 Total: -9.99 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.58 -7.13 -39.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229684992.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.569 kcal (2) G-P(sol) polarization free energy of solvation -32.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds