Wall clock time and date at job start Tue Mar 31 2020 02:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31766 * 119.06914 * 2 1 4 4 C 1.32955 * 120.86680 * 179.97438 * 3 2 1 5 5 O 1.35539 * 120.47501 * 180.02562 * 4 3 2 6 6 C 1.39023 * 119.04742 * 0.02562 * 4 3 2 7 7 C 1.50700 * 120.85225 * 180.02562 * 6 4 3 8 8 C 1.38994 * 118.30525 * 359.97438 * 6 4 3 9 9 O 1.35538 * 120.47935 * 180.02562 * 8 6 4 10 10 C 1.42894 * 116.99979 * 179.97438 * 9 8 6 11 11 H 1.09004 * 110.91581 * 333.89824 * 10 9 8 12 12 C 1.55153 * 111.00595 * 209.99366 * 10 9 8 13 13 C 1.54327 * 102.94777 * 206.42447 * 12 10 9 14 14 N 1.47023 * 107.26634 * 22.19238 * 13 12 10 15 15 C 1.36942 * 125.64451 * 181.02675 * 14 13 12 16 16 H 1.08001 * 119.99608 * 185.84961 * 15 14 13 17 17 C 1.38811 * 119.99859 * 5.83909 * 15 14 13 18 18 N 1.31619 * 119.99898 * 7.32562 * 17 15 14 19 19 Si 1.86798 * 119.99526 * 187.31977 * 17 15 14 20 20 H 1.48502 * 109.47424 * 265.01587 * 19 17 15 21 21 H 1.48507 * 109.46922 * 145.01666 * 19 17 15 22 22 H 1.48500 * 109.47468 * 25.02234 * 19 17 15 23 23 C 1.47421 * 108.70689 * 1.28873 * 14 13 12 24 24 N 1.31751 * 119.06181 * 180.27582 * 2 1 3 25 25 H 1.09000 * 109.46681 * 89.99694 * 1 2 3 26 26 H 1.09000 * 109.46972 * 209.99913 * 1 2 3 27 27 H 1.09003 * 109.46640 * 329.99950 * 1 2 3 28 28 H 0.96697 * 114.00177 * 269.97598 * 5 4 3 29 29 H 1.08997 * 109.47502 * 269.98220 * 7 6 4 30 30 H 1.09008 * 109.46821 * 29.97827 * 7 6 4 31 31 H 1.09000 * 109.47453 * 149.97668 * 7 6 4 32 32 H 1.09001 * 110.72119 * 88.05768 * 12 10 9 33 33 H 1.09002 * 110.72267 * 324.79134 * 12 10 9 34 34 H 1.08995 * 109.87769 * 262.77669 * 13 12 10 35 35 H 1.08994 * 109.88662 * 141.60966 * 13 12 10 36 36 H 0.97007 * 119.99060 * 179.97438 * 18 17 15 37 37 H 1.08997 * 110.36765 * 94.48217 * 23 14 13 38 38 H 1.09001 * 110.36963 * 216.80734 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1472 1.1517 0.0000 4 6 3.4761 1.1934 0.0005 5 8 4.1266 2.3825 0.0010 6 6 4.1889 -0.0002 0.0005 7 6 5.6959 -0.0004 0.0017 8 6 3.4762 -1.1935 0.0005 9 8 4.1265 -2.3827 0.0010 10 6 3.3206 -3.5627 0.0016 11 1 2.3461 -3.3682 0.4495 12 6 4.0429 -4.7291 0.7261 13 6 3.4258 -5.9807 0.0670 14 7 2.8916 -5.5676 -1.2389 15 6 2.2438 -6.3813 -2.1298 16 1 1.9713 -6.0055 -3.1049 17 6 1.9376 -7.6891 -1.7794 18 7 2.1379 -8.1042 -0.5465 19 14 1.2410 -8.8597 -3.0576 20 1 -0.2414 -8.8636 -2.9697 21 1 1.7553 -10.2300 -2.8063 22 1 1.6554 -8.4164 -4.4129 23 6 3.1743 -4.1339 -1.4334 24 7 2.1470 -1.1516 -0.0055 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 4.3160 2.7276 -0.8822 29 1 6.0601 -0.0003 -1.0257 30 1 6.0590 0.8896 0.5159 31 1 6.0588 -0.8904 0.5157 32 1 3.8289 -4.7108 1.7948 33 1 5.1172 -4.6886 0.5463 34 1 2.6208 -6.3692 0.6908 35 1 4.1922 -6.7434 -0.0704 36 1 1.9235 -9.0181 -0.3017 37 1 4.1005 -4.0024 -1.9928 38 1 2.3457 -3.6506 -1.9510 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229684992.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:50 Heat of formation + Delta-G solvation = -27.657408 kcal Electronic energy + Delta-G solvation = -21849.248955 eV Core-core repulsion = 18499.579476 eV Total energy + Delta-G solvation = -3349.669479 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.52353 -40.40372 -38.74083 -38.07640 -34.83100 -34.04909 -33.60849 -31.20630 -31.13668 -29.19260 -26.90103 -26.49636 -24.95181 -23.28919 -22.29562 -22.01351 -20.09728 -19.58362 -18.89624 -18.32182 -17.31060 -16.78251 -16.16612 -16.04292 -15.92360 -15.48056 -15.12039 -14.85154 -14.55043 -14.19538 -14.09968 -13.86997 -13.62365 -13.45685 -13.17353 -13.02982 -12.97643 -12.86710 -12.71923 -12.19221 -12.06865 -12.02945 -11.83178 -11.75292 -11.44583 -11.02102 -10.76507 -10.48884 -9.82808 -8.97069 -7.87087 -5.27594 -0.27253 -0.04965 1.46412 1.48050 1.56373 1.61055 2.33544 2.47782 2.54748 2.81630 3.29479 3.42380 3.62077 3.70730 3.79492 3.86364 3.91252 4.10589 4.24808 4.47971 4.61783 4.67551 4.70700 4.75150 4.77962 4.80543 4.89391 4.94019 4.98664 5.19970 5.33544 5.37337 5.52736 5.68837 5.75899 6.03117 6.16635 6.49948 6.96738 7.04015 7.68914 8.32918 9.20933 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.027203 B = 0.004111 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.055295 B = 6808.666891 C = 7337.434899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.362 3.638 3 N -0.570 5.570 4 C 0.386 3.614 5 O -0.468 6.468 6 C -0.239 4.239 7 C -0.087 4.087 8 C 0.362 3.638 9 O -0.284 6.284 10 C 0.089 3.911 11 H 0.093 0.907 12 C -0.123 4.123 13 C 0.180 3.820 14 N -0.620 5.620 15 C -0.250 4.250 16 H 0.081 0.919 17 C -0.059 4.059 18 N -0.946 5.946 19 Si 0.981 3.019 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.270 1.270 23 C 0.129 3.871 24 N -0.594 5.594 25 H 0.102 0.898 26 H 0.089 0.911 27 H 0.104 0.896 28 H 0.430 0.570 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.038 0.962 35 H 0.008 0.992 36 H 0.250 0.750 37 H 0.029 0.971 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.499 19.495 1.414 19.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.095 3.905 3 N -0.300 5.300 4 C 0.200 3.800 5 O -0.279 6.279 6 C -0.245 4.245 7 C -0.145 4.145 8 C 0.176 3.824 9 O -0.187 6.187 10 C 0.032 3.968 11 H 0.111 0.889 12 C -0.161 4.161 13 C 0.055 3.945 14 N -0.348 5.348 15 C -0.378 4.378 16 H 0.098 0.902 17 C -0.253 4.253 18 N -0.595 5.595 19 Si 0.809 3.191 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.194 1.194 23 C 0.003 3.997 24 N -0.326 5.326 25 H 0.120 0.880 26 H 0.107 0.893 27 H 0.123 0.877 28 H 0.294 0.706 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.056 0.944 35 H 0.026 0.974 36 H 0.059 0.941 37 H 0.047 0.953 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.840 19.180 1.978 19.489 hybrid contribution 0.387 -1.013 -0.996 1.472 sum 3.227 18.167 0.982 18.477 Atomic orbital electron populations 1.20738 0.82990 1.05150 1.05242 1.23321 0.98949 0.80785 0.87397 1.67917 1.10030 1.31131 1.20950 1.18975 0.86208 0.85539 0.89252 1.84637 1.74581 1.32417 1.36224 1.20989 1.00951 0.89859 1.12721 1.20457 0.86377 1.04003 1.03665 1.20115 0.87511 0.86926 0.87799 1.86221 1.35010 1.11794 1.85661 1.23551 0.94845 0.81090 0.97333 0.88867 1.22907 1.00689 0.92489 1.00056 1.21031 0.95399 0.92117 0.85910 1.44583 1.66705 1.04746 1.18748 1.19414 1.30445 0.93068 0.94881 0.90154 1.25667 1.01858 0.99108 0.98624 1.70145 1.54552 1.16913 1.17847 0.85038 0.77775 0.77881 0.78455 1.21077 1.21742 1.19450 1.21877 0.98063 0.85069 0.94731 1.68017 1.08817 1.32707 1.23032 0.88005 0.89272 0.87731 0.70641 0.89721 0.89127 0.91344 0.89069 0.89760 0.94365 0.97374 0.94088 0.95309 0.94229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.64 10.32 71.24 0.73 -0.90 16 2 C 0.36 9.92 7.64 138.77 1.06 10.98 16 3 N -0.57 -15.03 10.36 -300.81 -3.11 -18.15 16 4 C 0.39 9.12 7.80 84.71 0.66 9.79 16 5 O -0.47 -7.80 12.74 -88.44 -1.13 -8.93 16 6 C -0.24 -6.03 5.94 -19.49 -0.12 -6.15 16 7 C -0.09 -1.66 9.65 71.24 0.69 -0.97 16 8 C 0.36 11.32 7.49 84.70 0.63 11.95 16 9 O -0.28 -9.50 9.11 -88.43 -0.81 -10.31 16 10 C 0.09 3.37 3.38 32.07 0.11 3.48 16 11 H 0.09 3.71 6.99 -2.38 -0.02 3.69 16 12 C -0.12 -4.66 6.68 31.78 0.21 -4.45 16 13 C 0.18 8.97 5.45 86.73 0.47 9.44 16 14 N -0.62 -32.77 3.39 -691.54 -2.35 -35.11 16 15 C -0.25 -14.21 10.26 84.03 0.86 -13.35 16 16 H 0.08 4.40 7.84 -2.91 -0.02 4.38 16 17 C -0.06 -3.36 5.45 84.86 0.46 -2.89 16 18 N -0.95 -56.49 10.46 21.65 0.23 -56.26 16 19 Si 0.98 45.57 29.56 68.60 2.03 47.60 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 23 C 0.13 5.65 6.98 86.94 0.61 6.25 16 24 N -0.59 -19.05 8.68 -300.80 -2.61 -21.66 16 25 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.43 2.52 9.06 -74.06 -0.67 1.85 16 29 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.09 1.39 7.63 -2.38 -0.02 1.37 16 31 H 0.07 1.43 7.62 -2.39 -0.02 1.41 16 32 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 33 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 34 H 0.04 2.12 6.88 -2.39 -0.02 2.10 16 35 H 0.01 0.44 7.98 -2.39 -0.02 0.42 16 36 H 0.25 14.41 8.31 -92.70 -0.77 13.64 16 37 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -70.69 320.10 -0.95 -71.64 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 0.41 Total: 8.00 kcal Atomic # 6 Polarization: 16.79 SS G_CDS: 6.39 Total: 23.18 kcal Atomic # 7 Polarization: -123.34 SS G_CDS: -7.85 Total: -131.18 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -1.93 Total: -19.24 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -70.69 -0.95 -71.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229684992.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.986 kcal (2) G-P(sol) polarization free energy of solvation -70.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds