Wall clock time and date at job start Tue Mar 31 2020 02:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33698 * 126.27035 * 2 1 4 4 C 1.30621 * 108.99052 * 180.25449 * 3 2 1 5 5 O 1.33657 * 109.15591 * 359.77370 * 4 3 2 6 6 C 1.35340 * 107.68804 * 359.97438 * 5 4 3 7 7 C 1.46724 * 126.64565 * 179.97438 * 6 5 4 8 8 O 1.21688 * 120.00028 * 180.02562 * 7 6 5 9 9 N 1.34773 * 119.99806 * 0.02562 * 7 6 5 10 10 C 1.46507 * 119.99647 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46803 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47398 * 295.00382 * 11 10 9 13 13 N 1.46500 * 109.47023 * 55.00453 * 11 10 9 14 14 C 1.36933 * 119.99983 * 204.99625 * 13 11 10 15 15 H 1.08002 * 120.00189 * 0.02562 * 14 13 11 16 16 C 1.38812 * 120.00422 * 179.97438 * 14 13 11 17 17 N 1.31623 * 119.99438 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00488 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47306 * 60.00034 * 18 16 14 20 20 H 1.48498 * 109.47382 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47182 * 299.99946 * 18 16 14 22 22 C 1.52997 * 109.47060 * 175.00213 * 11 10 9 23 23 C 1.52999 * 117.50101 * 248.75250 * 22 11 10 24 24 C 1.52996 * 117.50050 * 180.09109 * 22 11 10 25 25 H 1.08999 * 109.46980 * 270.13100 * 1 2 3 26 26 H 1.08994 * 109.47098 * 30.13420 * 1 2 3 27 27 H 1.08998 * 109.46642 * 150.13545 * 1 2 3 28 28 H 1.07998 * 125.41980 * 179.78279 * 4 3 2 29 29 H 0.96994 * 120.00616 * 359.97438 * 9 7 6 30 30 H 1.09008 * 109.46606 * 60.00319 * 10 9 7 31 31 H 1.08990 * 109.47517 * 299.99936 * 10 9 7 32 32 H 0.96997 * 120.00274 * 24.99518 * 13 11 10 33 33 H 0.97001 * 120.00131 * 179.97438 * 17 16 14 34 34 H 1.09002 * 115.54867 * 34.41862 * 22 11 10 35 35 H 1.08998 * 117.49862 * 359.97438 * 23 22 11 36 36 H 1.09000 * 117.50295 * 145.02180 * 23 22 11 37 37 H 1.09005 * 117.49713 * 214.98330 * 24 22 11 38 38 H 1.08996 * 117.49883 * 359.97027 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0779 0.0000 4 6 3.5452 0.6899 -0.0055 5 8 3.5890 -0.6459 -0.0042 6 6 2.3138 -1.0991 0.0030 7 6 1.8828 -2.5016 0.0063 8 8 0.6967 -2.7737 0.0124 9 7 2.8006 -3.4886 0.0027 10 6 2.3702 -4.8890 0.0066 11 6 3.5993 -5.8002 0.0005 12 1 4.1446 -5.6686 -0.9341 13 7 4.4697 -5.4535 1.1268 14 6 5.8094 -5.7308 1.0674 15 1 6.2244 -6.2048 0.1901 16 6 6.6343 -5.4018 2.1342 17 7 6.1288 -4.8228 3.2027 18 14 8.4619 -5.7795 2.0529 19 1 9.0644 -5.0639 0.8997 20 1 9.1159 -5.3335 3.3093 21 1 8.6582 -7.2419 1.8854 22 6 3.1539 -7.2581 0.1303 23 6 3.4907 -7.9865 1.4329 24 6 4.2444 -8.3312 0.1460 25 1 -0.3633 0.0023 1.0277 26 1 -0.3633 0.8887 -0.5159 27 1 -0.3632 -0.8912 -0.5117 28 1 4.4043 1.3444 -0.0102 29 1 3.7460 -3.2718 -0.0025 30 1 1.7677 -5.0864 -0.8801 31 1 1.7771 -5.0844 0.8998 32 1 4.0972 -5.0274 1.9145 33 1 6.7051 -4.5932 3.9484 34 1 2.2104 -7.5065 -0.3557 35 1 4.0300 -7.4272 2.1974 36 1 2.7690 -8.7144 1.8037 37 1 4.0181 -9.2857 -0.3295 38 1 5.2790 -7.9986 0.0634 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266401524.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:26 Heat of formation + Delta-G solvation = 3.136643 kcal Electronic energy + Delta-G solvation = -21770.059072 eV Core-core repulsion = 18421.724923 eV Total energy + Delta-G solvation = -3348.334149 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.46700 -40.69425 -39.13801 -36.57066 -35.82103 -35.06565 -32.90631 -32.43140 -30.16216 -28.62682 -25.80289 -25.00183 -23.90567 -23.00868 -22.48510 -21.66819 -20.65565 -19.50665 -18.93811 -17.95811 -17.46884 -17.18687 -16.76876 -16.34378 -16.04763 -15.61392 -15.49432 -15.23852 -14.69628 -14.50780 -14.26149 -14.00698 -13.71493 -13.20176 -12.95902 -12.83663 -12.64543 -12.61510 -12.15814 -12.15108 -12.01070 -11.95957 -11.59714 -11.30254 -11.02184 -10.83861 -10.61689 -10.31400 -9.87328 -8.99938 -7.88588 -5.16325 -0.23135 1.38509 1.47842 1.49894 1.51096 1.56023 1.97354 2.21124 2.58529 3.13148 3.14602 3.46249 3.67437 3.73477 3.86225 3.98593 4.27727 4.34199 4.43659 4.43855 4.49854 4.58744 4.66253 4.69484 4.83458 4.90539 4.98381 5.00562 5.18669 5.20616 5.30224 5.38222 5.48228 5.66880 5.70070 6.28910 6.31193 6.55112 6.95079 7.39688 8.10256 8.35235 9.33679 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016333 B = 0.005256 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.866190 B = 5326.135409 C = 6696.755152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.073 3.927 3 N -0.520 5.520 4 C 0.222 3.778 5 O -0.197 6.197 6 C -0.140 4.140 7 C 0.603 3.397 8 O -0.546 6.546 9 N -0.699 5.699 10 C 0.127 3.873 11 C 0.191 3.809 12 H 0.061 0.939 13 N -0.721 5.721 14 C -0.219 4.219 15 H 0.076 0.924 16 C -0.066 4.066 17 N -0.965 5.965 18 Si 0.957 3.043 19 H -0.279 1.279 20 H -0.304 1.304 21 H -0.284 1.284 22 C -0.167 4.167 23 C -0.173 4.173 24 C -0.171 4.171 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.305 0.695 29 H 0.411 0.589 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.373 0.627 33 H 0.247 0.753 34 H 0.119 0.881 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.116 5.764 -8.845 12.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.051 4.051 3 N -0.250 5.250 4 C -0.002 4.002 5 O -0.083 6.083 6 C -0.195 4.195 7 C 0.389 3.611 8 O -0.427 6.427 9 N -0.348 5.348 10 C 0.003 3.997 11 C 0.082 3.918 12 H 0.079 0.921 13 N -0.361 5.361 14 C -0.351 4.351 15 H 0.094 0.906 16 C -0.258 4.258 17 N -0.616 5.616 18 Si 0.788 3.212 19 H -0.206 1.206 20 H -0.231 1.231 21 H -0.210 1.210 22 C -0.188 4.188 23 C -0.211 4.211 24 C -0.208 4.208 25 H 0.105 0.895 26 H 0.111 0.889 27 H 0.105 0.895 28 H 0.320 0.680 29 H 0.248 0.752 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.206 0.794 33 H 0.056 0.944 34 H 0.137 0.863 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.120 0.880 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.892 6.066 -8.916 13.363 hybrid contribution 1.945 -0.573 0.798 2.179 sum -5.946 5.493 -8.117 11.464 Atomic orbital electron populations 1.20406 0.84285 1.04591 1.04122 1.22410 0.99293 0.86397 0.97003 1.70386 1.02230 1.31241 1.21116 1.29549 0.98386 0.78978 0.93266 1.84561 1.29151 1.25611 1.69017 1.22837 0.82190 0.96199 1.18233 1.16452 0.85569 0.81993 0.77042 1.90796 1.16343 1.82560 1.53032 1.45903 1.10341 1.06375 1.72174 1.21630 0.96897 0.78702 1.02490 1.20158 0.89483 0.90633 0.91576 0.92130 1.42522 1.04453 1.71827 1.17272 1.19380 0.84896 1.30644 1.00194 0.90585 1.25310 1.01091 1.02651 0.96787 1.69795 1.35363 1.49162 1.07299 0.85454 0.81937 0.77707 0.76098 1.20559 1.23052 1.21014 1.23045 0.99685 0.94171 1.01874 1.22771 1.03361 1.02898 0.92030 1.22840 0.97175 0.99102 1.01652 0.89542 0.88872 0.89490 0.68008 0.75242 0.89128 0.92128 0.79437 0.94428 0.86299 0.90551 0.89041 0.88012 0.90432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.83 9.87 71.24 0.70 -1.13 16 2 C 0.07 2.07 7.16 41.83 0.30 2.37 16 3 N -0.52 -13.51 11.26 -303.13 -3.41 -16.92 16 4 C 0.22 4.66 13.21 130.42 1.72 6.39 16 5 O -0.20 -5.56 10.57 -6.98 -0.07 -5.63 16 6 C -0.14 -4.35 7.18 24.05 0.17 -4.18 16 7 C 0.60 20.36 7.79 86.46 0.67 21.04 16 8 O -0.55 -19.74 14.80 -4.31 -0.06 -19.80 16 9 N -0.70 -23.16 5.38 -467.03 -2.51 -25.67 16 10 C 0.13 3.98 5.22 86.38 0.45 4.43 16 11 C 0.19 6.59 2.86 44.99 0.13 6.72 16 12 H 0.06 2.10 8.08 -2.39 -0.02 2.08 16 13 N -0.72 -31.68 3.08 -322.94 -0.99 -32.67 16 14 C -0.22 -10.81 8.15 84.03 0.69 -10.12 16 15 H 0.08 3.64 6.91 -2.91 -0.02 3.62 16 16 C -0.07 -3.50 5.50 84.86 0.47 -3.04 16 17 N -0.97 -55.78 13.06 21.65 0.28 -55.50 16 18 Si 0.96 43.94 29.55 68.60 2.03 45.96 16 19 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 22 C -0.17 -5.24 5.70 -10.80 -0.06 -5.30 16 23 C -0.17 -6.15 9.74 30.62 0.30 -5.85 16 24 C -0.17 -5.60 9.87 30.62 0.30 -5.29 16 25 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.09 2.21 6.47 -2.39 -0.02 2.20 16 28 H 0.31 2.48 8.06 -2.91 -0.02 2.46 16 29 H 0.41 14.40 7.93 -92.71 -0.74 13.66 16 30 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 31 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.37 18.50 7.80 -92.71 -0.72 17.77 16 33 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 34 H 0.12 3.06 8.11 -2.39 -0.02 3.04 16 35 H 0.08 3.42 6.68 -2.39 -0.02 3.40 16 36 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 37 H 0.10 2.75 8.14 -2.38 -0.02 2.73 16 38 H 0.08 2.95 6.22 -2.39 -0.01 2.93 16 Total: -1.00 -64.03 324.70 0.74 -63.29 By element: Atomic # 1 Polarization: 41.27 SS G_CDS: -0.35 Total: 40.92 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 5.84 Total: 6.03 kcal Atomic # 7 Polarization: -124.13 SS G_CDS: -6.64 Total: -130.76 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.14 Total: -25.44 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -64.03 0.74 -63.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266401524.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.425 kcal (2) G-P(sol) polarization free energy of solvation -64.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds