Wall clock time and date at job start Tue Mar 31 2020 01:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41257 * 126.70218 * 2 1 4 4 C 1.36829 * 103.84357 * 180.10181 * 3 2 1 5 5 C 1.47514 * 126.94073 * 179.97438 * 4 3 2 6 6 O 1.21580 * 120.00163 * 359.70861 * 5 4 3 7 7 N 1.34780 * 119.99961 * 179.70363 * 5 4 3 8 8 C 1.47426 * 125.64523 * 4.78938 * 7 5 4 9 9 C 1.54907 * 104.83079 * 204.16239 * 8 7 5 10 10 C 1.55160 * 101.58212 * 322.98964 * 9 8 7 11 11 C 1.47016 * 125.65037 * 184.82819 * 7 5 4 12 12 H 1.08997 * 109.88313 * 59.33234 * 11 7 5 13 13 C 1.53001 * 109.88221 * 298.32482 * 11 7 5 14 14 N 1.46499 * 109.47467 * 175.93192 * 13 11 7 15 15 C 1.36934 * 120.00254 * 174.94092 * 14 13 11 16 16 H 1.08001 * 120.00182 * 0.02562 * 15 14 13 17 17 C 1.38815 * 119.99958 * 179.97438 * 15 14 13 18 18 N 1.31615 * 119.99955 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99837 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46924 * 180.02562 * 19 17 15 21 21 H 1.48497 * 109.47017 * 300.00049 * 19 17 15 22 22 H 1.48498 * 109.46997 * 60.00172 * 19 17 15 23 23 O 1.34644 * 106.11285 * 359.66347 * 4 3 2 24 24 N 1.20884 * 111.46680 * 0.23079 * 23 4 3 25 25 H 1.08999 * 109.47106 * 270.25751 * 1 2 3 26 26 H 1.08992 * 109.47325 * 30.26390 * 1 2 3 27 27 H 1.09004 * 109.46959 * 150.26306 * 1 2 3 28 28 H 1.08001 * 128.08045 * 359.97438 * 3 2 1 29 29 H 1.09001 * 110.36766 * 322.99995 * 8 7 5 30 30 H 1.09001 * 110.36677 * 85.21393 * 8 7 5 31 31 H 1.08997 * 111.00530 * 81.06048 * 9 8 7 32 32 H 1.09003 * 111.00487 * 204.91575 * 9 8 7 33 33 H 1.08995 * 110.72269 * 277.14302 * 10 9 8 34 34 H 1.08994 * 110.72069 * 153.86465 * 10 9 8 35 35 H 1.09000 * 109.47420 * 55.93023 * 13 11 7 36 36 H 1.09003 * 109.47350 * 295.93472 * 13 11 7 37 37 H 0.97001 * 119.99902 * 354.94216 * 14 13 11 38 38 H 0.97003 * 120.00343 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1325 0.0000 4 6 3.6121 0.6010 -0.0024 5 6 4.8870 1.3431 -0.0039 6 8 4.8828 2.5588 -0.0085 7 7 6.0566 0.6732 -0.0002 8 6 6.2089 -0.7901 -0.0945 9 6 7.5815 -1.0887 0.5584 10 6 8.4203 0.1304 0.0919 11 6 7.3916 1.2808 0.0994 12 1 7.4727 1.8476 1.0268 13 6 7.6340 2.2033 -1.0969 14 7 8.9249 2.8779 -0.9397 15 6 9.4058 3.6781 -1.9416 16 1 8.8332 3.8122 -2.8474 17 6 10.6288 4.3177 -1.7924 18 7 11.3263 4.1546 -0.6882 19 14 11.2844 5.4098 -3.1588 20 1 12.5990 5.9710 -2.7561 21 1 11.4476 4.6080 -4.3979 22 1 10.3281 6.5180 -3.4086 23 8 3.4539 -0.7361 0.0040 24 7 2.2848 -1.0433 0.0052 25 1 -0.3633 0.0046 1.0276 26 1 -0.3633 0.8875 -0.5179 27 1 -0.3633 -0.8924 -0.5098 28 1 2.0678 2.1747 -0.0004 29 1 5.4110 -1.2907 0.4540 30 1 6.2066 -1.1053 -1.1379 31 1 7.5001 -1.1140 1.6451 32 1 8.0009 -2.0201 0.1778 33 1 8.8102 -0.0316 -0.9130 34 1 9.2300 0.3325 0.7930 35 1 6.8392 2.9474 -1.1488 36 1 7.6410 1.6147 -2.0142 37 1 9.4391 2.7578 -0.1260 38 1 10.9857 3.5878 0.0214 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269999018.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:08 Heat of formation + Delta-G solvation = 45.504142 kcal Electronic energy + Delta-G solvation = -21741.345378 eV Core-core repulsion = 18394.848422 eV Total energy + Delta-G solvation = -3346.496956 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.22460 -40.16687 -37.64298 -35.18722 -34.78966 -32.62873 -31.41531 -31.36213 -29.05150 -28.54640 -25.32515 -24.37753 -23.21273 -22.53187 -21.98090 -20.73365 -19.42299 -18.02473 -17.83933 -17.20356 -16.55704 -16.29284 -15.50614 -14.55023 -14.38509 -14.22319 -13.73211 -13.71708 -13.65489 -13.51058 -13.39189 -13.12970 -13.02217 -12.71461 -12.24979 -11.71750 -11.65012 -11.19456 -10.82571 -10.65831 -10.59490 -10.56398 -10.37414 -10.20280 -9.95157 -9.92336 -9.19830 -8.83019 -8.66045 -6.96496 -6.06912 -3.06143 0.62824 1.78597 2.37089 2.90058 2.99053 3.54956 3.59055 3.76092 3.78458 4.09284 4.50988 4.53505 4.72202 4.76569 4.84648 4.94588 5.05529 5.10547 5.27396 5.28598 5.39642 5.42248 5.54251 5.62853 5.72366 5.73834 5.81289 5.86296 5.94263 6.02856 6.27474 6.37821 6.69533 6.89276 7.32582 7.73823 7.84996 7.97406 8.79182 9.25840 10.11986 10.26757 11.41851 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.027971 B = 0.003830 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.805640 B = 7309.396359 C = 8028.366747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.011 3.989 3 C -0.156 4.156 4 C -0.069 4.069 5 C 0.611 3.389 6 O -0.499 6.499 7 N -0.598 5.598 8 C 0.093 3.907 9 C -0.132 4.132 10 C -0.121 4.121 11 C 0.130 3.870 12 H 0.080 0.920 13 C 0.149 3.851 14 N -0.739 5.739 15 C -0.327 4.327 16 H 0.064 0.936 17 C -0.045 4.045 18 N -0.945 5.945 19 Si 1.081 2.919 20 H -0.285 1.285 21 H -0.296 1.296 22 H -0.295 1.295 23 O 0.115 5.885 24 N -0.352 5.352 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.184 0.816 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.036 0.964 36 H 0.024 0.976 37 H 0.366 0.634 38 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.014 -13.229 3.442 22.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.147 4.147 3 C -0.178 4.178 4 C -0.135 4.135 5 C 0.396 3.604 6 O -0.373 6.373 7 N -0.331 5.331 8 C -0.029 4.029 9 C -0.171 4.171 10 C -0.159 4.159 11 C 0.028 3.972 12 H 0.098 0.902 13 C 0.021 3.979 14 N -0.385 5.385 15 C -0.458 4.458 16 H 0.082 0.918 17 C -0.243 4.243 18 N -0.591 5.591 19 Si 0.911 3.089 20 H -0.210 1.210 21 H -0.223 1.223 22 H -0.223 1.223 23 O 0.043 5.957 24 N -0.055 5.055 25 H 0.101 0.899 26 H 0.104 0.896 27 H 0.097 0.903 28 H 0.201 0.799 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.054 0.946 36 H 0.042 0.958 37 H 0.200 0.800 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.176 -12.810 2.769 21.605 hybrid contribution -1.316 -0.255 0.634 1.483 sum -18.493 -13.064 3.403 22.896 Atomic orbital electron populations 1.20203 0.85281 1.04131 1.03659 1.23641 0.99349 0.88337 1.03370 1.22873 0.89893 1.01819 1.03259 1.24312 0.97309 0.83761 1.08100 1.16157 0.80124 0.85801 0.78298 1.90935 1.85263 1.11427 1.49719 1.48380 1.05514 1.08276 1.70955 1.22553 0.98865 0.79851 1.01645 1.22798 0.94189 0.99154 1.00912 1.22690 0.96960 0.92664 1.03548 1.21952 0.79513 0.95056 1.00727 0.90199 1.20932 0.89853 0.93599 0.93495 1.42190 1.19231 1.57081 1.20026 1.20016 1.04614 1.23893 0.97300 0.91827 1.25768 0.93971 1.01702 1.02827 1.70885 1.40069 1.41397 1.06741 0.83233 0.76099 0.75608 0.73914 1.21027 1.22300 1.22264 1.85045 1.21181 1.22312 1.67126 1.73710 0.89509 1.24497 1.17752 0.89906 0.89649 0.90298 0.79884 0.89820 0.90631 0.90576 0.89549 0.89629 0.89659 0.94606 0.95845 0.80048 0.93487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.47 36.01 0.38 -0.11 16 2 C 0.01 0.11 7.31 -82.17 -0.60 -0.49 16 3 C -0.16 -1.78 10.91 -38.95 -0.43 -2.21 16 4 C -0.07 -0.91 7.07 -36.31 -0.26 -1.17 16 5 C 0.61 9.76 7.67 -12.48 -0.10 9.66 16 6 O -0.50 -9.74 15.72 5.29 0.08 -9.65 16 7 N -0.60 -8.89 3.06 -164.25 -0.50 -9.39 16 8 C 0.09 1.05 6.37 -2.53 -0.02 1.03 16 9 C -0.13 -1.37 7.08 -24.58 -0.17 -1.54 16 10 C -0.12 -1.70 6.18 -24.89 -0.15 -1.85 16 11 C 0.13 2.21 2.96 -66.96 -0.20 2.01 16 12 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 13 C 0.15 3.26 5.64 -4.04 -0.02 3.23 16 14 N -0.74 -19.17 5.40 -59.91 -0.32 -19.49 16 15 C -0.33 -9.55 9.99 -15.06 -0.15 -9.70 16 16 H 0.06 1.85 7.83 -52.49 -0.41 1.44 16 17 C -0.05 -1.35 5.50 -17.43 -0.10 -1.44 16 18 N -0.95 -29.52 13.70 55.49 0.76 -28.76 16 19 Si 1.08 26.47 29.92 -169.99 -5.09 21.39 16 20 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.30 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.30 -6.97 7.11 56.52 0.40 -6.57 16 23 O 0.11 1.42 8.48 15.55 0.13 1.55 16 24 N -0.35 -4.28 12.04 33.52 0.40 -3.88 16 25 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.18 1.79 8.06 -52.49 -0.42 1.36 16 29 H 0.08 0.84 6.00 -51.93 -0.31 0.53 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 1.31 7.78 -51.93 -0.40 0.91 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.04 0.87 6.58 -51.93 -0.34 0.53 16 36 H 0.02 0.52 8.05 -51.93 -0.42 0.10 16 37 H 0.37 9.48 6.41 -40.82 -0.26 9.22 16 38 H 0.25 7.76 6.77 -40.82 -0.28 7.48 16 LS Contribution 319.43 15.07 4.81 4.81 Total: -1.00 -34.73 319.43 -6.56 -41.29 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -5.03 Total: 4.70 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -1.81 Total: -2.56 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: 0.34 Total: -61.52 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.22 Total: -8.10 kcal Atomic # 14 Polarization: 26.47 SS G_CDS: -5.09 Total: 21.39 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.73 -6.56 -41.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269999018.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.794 kcal (2) G-P(sol) polarization free energy of solvation -34.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds