Wall clock time and date at job start Tue Mar 31 2020 02:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35313 * 128.03866 * 2 1 4 4 O 1.34018 * 106.66207 * 180.22798 * 3 2 1 5 5 N 1.20900 * 111.85090 * 359.76159 * 4 3 2 6 6 C 1.30988 * 111.44036 * 0.02562 * 5 4 3 7 7 C 1.48328 * 126.93890 * 179.97438 * 6 5 4 8 8 O 1.21496 * 119.99889 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00200 * 0.02562 * 7 6 5 10 10 C 1.47421 * 125.64451 * 5.15822 * 9 7 6 11 11 C 1.54916 * 104.83028 * 155.91084 * 10 9 7 12 12 C 1.55158 * 101.58051 * 37.00722 * 11 10 9 13 13 C 1.47018 * 125.65105 * 185.20062 * 9 7 6 14 14 H 1.08993 * 109.88385 * 300.59717 * 13 9 7 15 15 C 1.53005 * 109.88003 * 61.60323 * 13 9 7 16 16 N 1.46494 * 109.46952 * 185.55445 * 15 13 9 17 17 C 1.36938 * 119.99999 * 175.01666 * 16 15 13 18 18 H 1.07999 * 119.99901 * 359.97438 * 17 16 15 19 19 C 1.38816 * 120.00273 * 180.02562 * 17 16 15 20 20 N 1.31618 * 119.99641 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00238 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47243 * 179.97438 * 21 19 17 23 23 H 1.48502 * 109.46961 * 299.99615 * 21 19 17 24 24 H 1.48499 * 109.46877 * 59.99179 * 21 19 17 25 25 H 1.09004 * 109.46912 * 270.15320 * 1 2 3 26 26 H 1.09000 * 109.47250 * 30.14722 * 1 2 3 27 27 H 1.08993 * 109.47397 * 150.15028 * 1 2 3 28 28 H 1.07995 * 126.67045 * 0.02562 * 3 2 1 29 29 H 1.09003 * 110.37146 * 274.74573 * 10 9 7 30 30 H 1.08996 * 110.37388 * 36.96017 * 10 9 7 31 31 H 1.09005 * 111.00322 * 155.08241 * 11 10 9 32 32 H 1.09001 * 110.99949 * 278.93470 * 11 10 9 33 33 H 1.09002 * 110.71506 * 206.13471 * 12 11 10 34 34 H 1.08996 * 110.71785 * 82.86514 * 12 11 10 35 35 H 1.08997 * 109.47050 * 65.55814 * 15 13 9 36 36 H 1.09000 * 109.47197 * 305.55737 * 15 13 9 37 37 H 0.96998 * 120.00325 * 355.02028 * 16 15 13 38 38 H 0.97002 * 120.00559 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0657 0.0000 4 8 3.5888 0.5772 -0.0051 5 7 3.5988 -0.6317 -0.0034 6 6 2.3836 -1.1206 0.0024 7 6 1.9991 -2.5532 0.0055 8 8 0.8254 -2.8671 0.0105 9 7 2.9517 -3.5066 0.0028 10 6 4.4034 -3.2710 0.1045 11 6 4.9810 -4.5926 0.6698 12 6 4.0915 -5.6490 -0.0374 13 6 2.7153 -4.9538 -0.1029 14 1 2.0886 -5.2884 0.7237 15 6 2.0337 -5.2737 -1.4349 16 7 1.6829 -6.6955 -1.4748 17 6 0.9690 -7.1952 -2.5312 18 1 0.6643 -6.5410 -3.3347 19 6 0.6361 -8.5423 -2.5688 20 7 1.0070 -9.3394 -1.5893 21 14 -0.3383 -9.2238 -4.0095 22 1 -0.5621 -10.6784 -3.8119 23 1 -1.6476 -8.5282 -4.0947 24 1 0.4205 -9.0064 -5.2673 25 1 -0.3633 0.0027 1.0277 26 1 -0.3634 0.8887 -0.5161 27 1 -0.3634 -0.8913 -0.5115 28 1 2.0560 2.1074 0.0004 29 1 4.8240 -3.0634 -0.8794 30 1 4.6069 -2.4443 0.7852 31 1 6.0277 -4.7128 0.3901 32 1 4.8594 -4.6407 1.7520 33 1 4.0342 -6.5629 0.5539 34 1 4.4654 -5.8594 -1.0393 35 1 2.7136 -5.0441 -2.2553 36 1 1.1293 -4.6734 -1.5337 37 1 1.9562 -7.2829 -0.7530 38 1 1.5127 -8.9855 -0.8410 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270287466.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:36 Heat of formation + Delta-G solvation = 21.761767 kcal Electronic energy + Delta-G solvation = -21953.017811 eV Core-core repulsion = 18605.491309 eV Total energy + Delta-G solvation = -3347.526503 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -46.19071 -41.42754 -38.94303 -36.85601 -35.75519 -34.04321 -33.30047 -32.45873 -30.28479 -29.17750 -26.76846 -26.25240 -24.70619 -23.47853 -22.73684 -22.05626 -20.72147 -19.52120 -18.91132 -18.74104 -17.99598 -17.63976 -16.92586 -16.15404 -15.77506 -15.65681 -15.37353 -15.12855 -14.97003 -14.46489 -14.21603 -14.17372 -13.97269 -13.79608 -13.38026 -13.28988 -12.80158 -12.64897 -12.51774 -12.13838 -12.04634 -11.90257 -11.82945 -11.45232 -11.39896 -11.36029 -11.01412 -10.43539 -9.95875 -9.23270 -8.48735 -5.43329 0.00001 0.67568 1.48441 1.55090 1.65151 1.82555 1.89897 2.23653 2.65152 2.72596 3.30035 3.34842 3.43530 3.58961 3.72008 3.78396 3.87047 4.03315 4.08766 4.12319 4.30236 4.35641 4.57250 4.67377 4.71381 4.71908 4.78940 4.82242 4.88573 4.93359 4.96365 5.15851 5.20583 5.29035 5.47570 6.18098 6.41911 6.69263 6.98733 7.02296 7.87202 7.99939 9.03227 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.022668 B = 0.004325 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.918280 B = 6472.165664 C = 7364.649695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.176 4.176 3 C -0.028 4.028 4 O 0.137 5.863 5 N -0.338 5.338 6 C -0.054 4.054 7 C 0.596 3.404 8 O -0.555 6.555 9 N -0.600 5.600 10 C 0.101 3.899 11 C -0.116 4.116 12 C -0.118 4.118 13 C 0.137 3.863 14 H 0.059 0.941 15 C 0.161 3.839 16 N -0.746 5.746 17 C -0.345 4.345 18 H 0.057 0.943 19 C -0.095 4.095 20 N -0.967 5.967 21 Si 1.130 2.870 22 H -0.285 1.285 23 H -0.281 1.281 24 H -0.275 1.275 25 H 0.079 0.921 26 H 0.107 0.893 27 H 0.049 0.951 28 H 0.281 0.719 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.117 0.883 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.014 0.986 36 H 0.005 0.995 37 H 0.365 0.635 38 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.532 24.106 5.899 26.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.182 4.182 3 C -0.108 4.108 4 O 0.058 5.942 5 N -0.037 5.037 6 C -0.211 4.211 7 C 0.384 3.616 8 O -0.432 6.432 9 N -0.334 5.334 10 C -0.020 4.020 11 C -0.154 4.154 12 C -0.156 4.156 13 C 0.033 3.967 14 H 0.077 0.923 15 C 0.033 3.967 16 N -0.392 5.392 17 C -0.476 4.476 18 H 0.075 0.925 19 C -0.287 4.287 20 N -0.614 5.614 21 Si 0.954 3.046 22 H -0.211 1.211 23 H -0.208 1.208 24 H -0.201 1.201 25 H 0.098 0.902 26 H 0.126 0.874 27 H 0.068 0.932 28 H 0.296 0.704 29 H 0.092 0.908 30 H 0.114 0.886 31 H 0.135 0.865 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.032 0.968 36 H 0.023 0.977 37 H 0.198 0.802 38 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 8.318 22.142 5.077 24.192 hybrid contribution -0.376 1.009 0.839 1.365 sum 7.942 23.151 5.916 25.180 Atomic orbital electron populations 1.20205 0.86190 1.03793 1.03440 1.21664 0.99858 0.90166 1.06497 1.26658 0.80206 1.02474 1.01440 1.84742 1.30686 1.14354 1.64392 1.74229 1.20848 0.92523 1.16085 1.23226 0.91171 0.95779 1.10935 1.17067 0.84395 0.83389 0.76749 1.90794 1.18677 1.82260 1.51502 1.48465 1.08497 1.05733 1.70674 1.22653 0.77380 0.99806 1.02204 1.22835 1.00585 0.91190 1.00782 1.22632 0.91730 0.98851 1.02363 1.21667 0.98753 0.79801 0.96483 0.92258 1.20811 0.95778 0.85091 0.94981 1.42283 1.67064 1.04740 1.25066 1.20331 1.30786 0.95748 1.00717 0.92453 1.27314 1.02719 0.92751 1.05881 1.70989 1.42189 1.37165 1.11036 0.82619 0.74866 0.75383 0.71757 1.21052 1.20757 1.20071 0.90192 0.87448 0.93195 0.70372 0.90822 0.88604 0.86453 0.89435 0.89412 0.90769 0.96777 0.97740 0.80181 0.94465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.55 10.01 71.24 0.71 -0.84 16 2 C -0.18 -3.70 6.34 -19.54 -0.12 -3.82 16 3 C -0.03 -0.32 12.24 67.14 0.82 0.51 16 4 O 0.14 2.29 11.18 71.87 0.80 3.09 16 5 N -0.34 -8.04 9.45 -49.52 -0.47 -8.51 16 6 C -0.05 -1.54 7.01 42.96 0.30 -1.24 16 7 C 0.60 21.94 7.59 86.93 0.66 22.60 16 8 O -0.56 -24.61 14.52 -3.70 -0.05 -24.66 16 9 N -0.60 -20.44 3.06 -790.90 -2.42 -22.87 16 10 C 0.10 2.53 6.01 86.86 0.52 3.05 16 11 C -0.12 -2.47 7.09 31.99 0.23 -2.24 16 12 C -0.12 -3.55 6.12 31.78 0.19 -3.35 16 13 C 0.14 5.24 2.91 45.34 0.13 5.37 16 14 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 15 C 0.16 7.77 5.67 86.38 0.49 8.26 16 16 N -0.75 -41.57 5.46 -343.46 -1.88 -43.45 16 17 C -0.34 -21.12 9.99 84.03 0.84 -20.29 16 18 H 0.06 3.51 7.83 -2.91 -0.02 3.49 16 19 C -0.10 -5.78 5.50 84.86 0.47 -5.32 16 20 N -0.97 -62.15 13.70 21.65 0.30 -61.85 16 21 Si 1.13 54.14 29.92 68.60 2.05 56.20 16 22 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 23 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 24 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 25 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 26 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.05 1.38 6.89 -2.39 -0.02 1.37 16 28 H 0.28 -0.35 8.06 -2.91 -0.02 -0.38 16 29 H 0.07 1.80 8.14 -2.39 -0.02 1.79 16 30 H 0.10 2.18 6.56 -2.39 -0.02 2.17 16 31 H 0.12 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.07 2.39 7.76 -2.39 -0.02 2.37 16 35 H 0.01 0.69 8.01 -2.39 -0.02 0.68 16 36 H 0.00 0.25 6.87 -2.39 -0.02 0.23 16 37 H 0.37 20.29 6.31 -92.71 -0.58 19.70 16 38 H 0.25 15.64 6.78 -92.71 -0.63 15.01 16 Total: -1.00 -82.43 317.14 4.21 -78.22 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.64 Total: 21.15 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 5.24 Total: 2.68 kcal Atomic # 7 Polarization: -132.21 SS G_CDS: -4.47 Total: -136.68 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: 0.75 Total: -21.57 kcal Atomic # 14 Polarization: 54.14 SS G_CDS: 2.05 Total: 56.20 kcal Total: -82.43 4.21 -78.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270287466.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.980 kcal (2) G-P(sol) polarization free energy of solvation -82.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds