Wall clock time and date at job start Tue Mar 31 2020 02:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.33686 * 126.27263 * 2 1 4 4 C 1.30616 * 108.99363 * 179.97438 * 3 2 1 5 5 O 1.33664 * 109.15535 * 0.02562 * 4 3 2 6 6 C 1.35349 * 107.68358 * 359.97438 * 5 4 3 7 7 C 1.46722 * 126.64103 * 179.97438 * 6 5 4 8 8 O 1.21686 * 119.99616 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00270 * 0.02615 * 7 6 5 10 10 C 1.46502 * 119.99949 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47141 * 176.07897 * 10 9 7 12 12 N 1.46498 * 112.85106 * 294.03447 * 11 10 9 13 13 C 1.36930 * 119.99995 * 294.80804 * 12 11 10 14 14 H 1.08003 * 120.00497 * 353.87536 * 13 12 11 15 15 C 1.38818 * 120.00198 * 173.87205 * 13 12 11 16 16 N 1.31620 * 119.99814 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00356 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46920 * 60.00012 * 17 15 13 19 19 H 1.48496 * 109.47485 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47152 * 300.00360 * 17 15 13 21 21 C 1.53779 * 113.61484 * 162.72797 * 11 10 9 22 22 C 1.53780 * 87.08125 * 220.02066 * 21 11 10 23 23 C 1.53778 * 87.08298 * 25.43295 * 22 21 11 24 24 H 1.09000 * 109.47055 * 90.02056 * 1 2 3 25 25 H 1.08999 * 109.47182 * 210.02472 * 1 2 3 26 26 H 1.09005 * 109.46576 * 330.02011 * 1 2 3 27 27 H 1.08007 * 125.42469 * 179.97438 * 4 3 2 28 28 H 0.96999 * 119.99742 * 0.02562 * 9 7 6 29 29 H 1.08996 * 109.47368 * 296.08081 * 10 9 7 30 30 H 1.09004 * 109.47049 * 56.08363 * 10 9 7 31 31 H 0.97005 * 119.99961 * 114.80669 * 12 11 10 32 32 H 0.96999 * 119.99678 * 179.97438 * 16 15 13 33 33 H 1.09000 * 113.61384 * 334.56851 * 21 11 10 34 34 H 1.08997 * 113.61597 * 105.47025 * 21 11 10 35 35 H 1.09001 * 113.61607 * 270.88144 * 22 21 11 36 36 H 1.08996 * 113.61750 * 139.98041 * 22 21 11 37 37 H 1.09002 * 113.61702 * 220.02066 * 23 22 21 38 38 H 1.09001 * 113.61610 * 89.11587 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5452 0.6898 0.0006 5 8 3.5890 -0.6461 0.0004 6 6 2.3136 -1.0992 0.0002 7 6 1.8826 -2.5017 -0.0005 8 8 0.6966 -2.7737 -0.0010 9 7 2.8004 -3.4887 -0.0006 10 6 2.3700 -4.8891 -0.0020 11 6 3.5958 -5.7993 -0.1005 12 7 4.2989 -5.6703 -1.3792 13 6 3.6824 -6.0511 -2.5410 14 1 2.7186 -6.5374 -2.5067 15 6 4.2959 -5.8121 -3.7631 16 7 5.4702 -5.2189 -3.8050 17 14 3.4546 -6.3309 -5.3481 18 1 2.1453 -5.6395 -5.4627 19 1 4.3100 -5.9649 -6.5054 20 1 3.2391 -7.8002 -5.3361 21 6 3.3160 -7.2556 0.3066 22 6 4.6877 -7.2422 1.0016 23 6 4.5233 -5.7181 1.1235 24 1 -0.3633 -0.0004 -1.0277 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3633 0.8902 0.5136 27 1 4.4044 1.3443 0.0003 28 1 3.7458 -3.2719 0.0001 29 1 1.8308 -5.1044 0.9205 30 1 1.7157 -5.0673 -0.8554 31 1 5.2013 -5.3150 -1.4028 32 1 5.8990 -5.0522 -4.6589 33 1 2.4784 -7.3631 0.9957 34 1 3.2613 -7.9423 -0.5381 35 1 5.5096 -7.5421 0.3515 36 1 4.6960 -7.7585 1.9615 37 1 5.4432 -5.1634 0.9382 38 1 4.0157 -5.4052 2.0360 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273061539.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:39:43 Heat of formation + Delta-G solvation = -6.314028 kcal Electronic energy + Delta-G solvation = -22009.945984 eV Core-core repulsion = 18661.202024 eV Total energy + Delta-G solvation = -3348.743960 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.47118 -40.93977 -39.82288 -36.51685 -35.33648 -35.20423 -32.71102 -31.93283 -29.72467 -28.08794 -26.72647 -25.78866 -24.74401 -23.30747 -22.49360 -21.64179 -19.88732 -19.28148 -19.04579 -17.95832 -17.48528 -17.19327 -16.70288 -16.13668 -15.95737 -15.67789 -15.49986 -15.10873 -14.96329 -14.30982 -14.23278 -14.04080 -13.73310 -13.22247 -13.09259 -12.98325 -12.89918 -12.58450 -12.22447 -12.16808 -12.00489 -11.94514 -11.61364 -11.49708 -11.28801 -10.92477 -10.77163 -10.29365 -9.86027 -9.00107 -7.95196 -5.21982 -0.23265 1.38385 1.44041 1.45616 1.46068 1.50625 1.97942 2.24185 2.53507 3.13209 3.36639 3.66341 3.72391 3.74052 3.80721 3.96695 4.07444 4.21746 4.41783 4.42677 4.62636 4.66813 4.80829 4.81476 4.87540 4.91233 4.98138 5.00894 5.12809 5.25240 5.30860 5.39192 5.43509 5.60158 5.70456 6.28744 6.30634 6.55600 6.98362 7.35060 8.09105 8.32187 9.27153 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.014300 B = 0.005663 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.521288 B = 4943.105608 C = 5815.290388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.071 3.929 3 N -0.521 5.521 4 C 0.224 3.776 5 O -0.196 6.196 6 C -0.137 4.137 7 C 0.599 3.401 8 O -0.552 6.552 9 N -0.688 5.688 10 C 0.127 3.873 11 C 0.156 3.844 12 N -0.705 5.705 13 C -0.223 4.223 14 H 0.068 0.932 15 C -0.067 4.067 16 N -0.962 5.962 17 Si 0.956 3.044 18 H -0.288 1.288 19 H -0.296 1.296 20 H -0.278 1.278 21 C -0.147 4.147 22 C -0.120 4.120 23 C -0.129 4.129 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.309 0.691 28 H 0.408 0.592 29 H 0.081 0.919 30 H 0.040 0.960 31 H 0.376 0.624 32 H 0.249 0.751 33 H 0.098 0.902 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.651 7.592 12.905 15.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.053 4.053 3 N -0.250 5.250 4 C 0.000 4.000 5 O -0.082 6.082 6 C -0.192 4.192 7 C 0.385 3.615 8 O -0.433 6.433 9 N -0.335 5.335 10 C 0.001 3.999 11 C 0.064 3.936 12 N -0.345 5.345 13 C -0.355 4.355 14 H 0.086 0.914 15 C -0.260 4.260 16 N -0.613 5.613 17 Si 0.787 3.213 18 H -0.215 1.215 19 H -0.223 1.223 20 H -0.204 1.204 21 C -0.187 4.187 22 C -0.158 4.158 23 C -0.167 4.167 24 H 0.101 0.899 25 H 0.104 0.896 26 H 0.113 0.887 27 H 0.324 0.676 28 H 0.243 0.757 29 H 0.099 0.901 30 H 0.058 0.942 31 H 0.209 0.791 32 H 0.058 0.942 33 H 0.116 0.884 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.721 7.879 12.765 15.456 hybrid contribution 0.797 -0.642 -1.560 1.865 sum -2.924 7.237 11.206 13.656 Atomic orbital electron populations 1.20396 0.84571 1.04573 1.03944 1.22366 0.99227 0.86532 0.97157 1.70370 1.02353 1.31173 1.21136 1.29606 0.98365 0.78937 0.93093 1.84528 1.28878 1.25616 1.69171 1.22780 0.82305 0.95992 1.18111 1.16543 0.85671 0.82151 0.77138 1.90791 1.16668 1.82617 1.53228 1.45663 1.09826 1.06269 1.71769 1.21870 0.98102 0.79321 1.00615 1.21157 0.91617 0.94106 0.86695 1.42107 1.15731 1.75975 1.00646 1.19285 1.01575 1.29429 0.85210 0.91389 1.25342 0.98050 1.02481 1.00124 1.69764 1.17130 1.49608 1.24788 0.85466 0.77328 0.78123 0.80398 1.21495 1.22262 1.20412 1.23323 0.98454 0.96888 1.00022 1.22554 0.96709 0.96090 1.00417 1.23132 0.99201 0.97310 0.97055 0.89883 0.89643 0.88710 0.67631 0.75697 0.90073 0.94199 0.79057 0.94219 0.88374 0.93327 0.92147 0.89475 0.91740 0.87553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.97 9.87 71.24 0.70 -1.27 16 2 C 0.07 2.07 7.16 41.84 0.30 2.37 16 3 N -0.52 -13.47 11.26 -303.12 -3.41 -16.88 16 4 C 0.22 4.44 13.21 130.42 1.72 6.17 16 5 O -0.20 -5.26 10.57 -7.13 -0.08 -5.33 16 6 C -0.14 -4.34 7.18 24.04 0.17 -4.17 16 7 C 0.60 21.43 7.79 86.46 0.67 22.10 16 8 O -0.55 -21.79 14.79 -4.31 -0.06 -21.85 16 9 N -0.69 -23.70 5.44 -467.04 -2.54 -26.24 16 10 C 0.13 4.45 5.03 86.38 0.43 4.89 16 11 C 0.16 5.46 0.80 4.13 0.00 5.46 16 12 N -0.71 -32.28 5.18 -300.97 -1.56 -33.84 16 13 C -0.22 -11.77 9.07 84.04 0.76 -11.01 16 14 H 0.07 3.57 7.83 -2.91 -0.02 3.55 16 15 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 16 N -0.96 -56.79 13.07 21.65 0.28 -56.51 16 17 Si 0.96 46.22 29.55 68.60 2.03 48.24 16 18 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 19 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 20 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 21 C -0.15 -4.61 7.28 31.12 0.23 -4.39 16 22 C -0.12 -3.34 7.99 31.12 0.25 -3.09 16 23 C -0.13 -3.54 7.08 31.12 0.22 -3.32 16 24 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.08 2.34 6.47 -2.39 -0.02 2.32 16 26 H 0.09 1.94 8.14 -2.38 -0.02 1.93 16 27 H 0.31 1.94 8.06 -2.91 -0.02 1.92 16 28 H 0.41 13.55 8.10 -92.71 -0.75 12.80 16 29 H 0.08 2.48 8.06 -2.39 -0.02 2.46 16 30 H 0.04 1.68 7.85 -2.38 -0.02 1.66 16 31 H 0.38 18.61 7.87 -92.70 -0.73 17.88 16 32 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 33 H 0.10 2.53 8.04 -2.39 -0.02 2.51 16 34 H 0.05 1.79 7.87 -2.39 -0.02 1.77 16 35 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.06 1.81 8.09 -2.39 -0.02 1.79 16 38 H 0.11 2.36 8.10 -2.39 -0.02 2.34 16 Total: -1.00 -68.85 326.37 0.21 -68.65 By element: Atomic # 1 Polarization: 33.71 SS G_CDS: -0.38 Total: 33.32 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 5.93 Total: 10.45 kcal Atomic # 7 Polarization: -126.25 SS G_CDS: -7.23 Total: -133.48 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.14 Total: -27.18 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.24 kcal Total: -68.85 0.21 -68.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273061539.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.333 kcal (2) G-P(sol) polarization free energy of solvation -68.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds