Wall clock time and date at job start Tue Mar 31 2020 02:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41262 * 128.07580 * 2 1 4 4 N 1.30135 * 106.58696 * 179.89452 * 3 2 1 5 5 O 1.20884 * 111.98346 * 0.39630 * 4 3 2 6 6 C 1.34642 * 111.46673 * 359.74333 * 5 4 3 7 7 C 1.47511 * 126.94113 * 180.02562 * 6 5 4 8 8 O 1.21590 * 120.00032 * 179.97438 * 7 6 5 9 9 N 1.34774 * 120.00341 * 359.97438 * 7 6 5 10 10 C 1.46505 * 120.00443 * 179.97438 * 9 7 6 11 11 C 1.53785 * 113.61287 * 254.13503 * 10 9 7 12 12 C 1.54054 * 86.98053 * 270.83558 * 11 10 9 13 13 C 1.53008 * 113.61556 * 220.02148 * 12 11 10 14 14 N 1.46497 * 109.46778 * 272.49900 * 13 12 11 15 15 C 1.36945 * 119.99738 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99759 * 359.97438 * 15 14 13 17 17 C 1.38808 * 119.99866 * 180.02562 * 15 14 13 18 18 N 1.31620 * 119.99815 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00219 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.46866 * 90.00654 * 19 17 15 21 21 H 1.48500 * 109.47044 * 210.00171 * 19 17 15 22 22 H 1.48501 * 109.47108 * 330.00501 * 19 17 15 23 23 C 1.53777 * 87.08159 * 334.57026 * 12 11 10 24 24 H 1.09002 * 109.47152 * 269.67368 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.67468 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.67449 * 1 2 3 27 27 H 1.07996 * 126.70320 * 0.02562 * 3 2 1 28 28 H 0.97002 * 119.99517 * 359.97438 * 9 7 6 29 29 H 1.09007 * 112.84563 * 25.32573 * 10 9 7 30 30 H 1.08997 * 113.61125 * 25.42666 * 11 10 9 31 31 H 1.08999 * 113.61032 * 156.33521 * 11 10 9 32 32 H 1.08997 * 113.68785 * 89.13141 * 12 11 10 33 33 H 1.08998 * 109.46726 * 32.49347 * 13 12 11 34 34 H 1.08999 * 109.46913 * 152.49726 * 13 12 11 35 35 H 0.97006 * 120.00512 * 0.02562 * 14 13 12 36 36 H 0.97004 * 119.99966 * 179.97438 * 18 17 15 37 37 H 1.09001 * 113.61509 * 270.88678 * 23 12 11 38 38 H 1.08995 * 113.69260 * 139.98593 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3782 1.1120 0.0000 4 7 3.5891 0.6353 0.0023 5 8 3.5995 -0.5735 -0.0041 6 6 2.3508 -1.0770 -0.0061 7 6 1.9696 -2.5020 -0.0129 8 8 0.7952 -2.8171 -0.0136 9 7 2.9229 -3.4547 -0.0183 10 6 2.5442 -4.8700 -0.0245 11 6 2.7586 -5.5709 1.3274 12 6 4.1839 -5.8951 0.8410 13 6 4.6563 -7.3001 1.2205 14 7 5.2696 -7.2664 2.5505 15 6 5.7696 -8.4152 3.1032 16 1 5.7113 -9.3461 2.5589 17 6 6.3502 -8.3834 4.3636 18 7 6.8303 -9.4877 4.8951 19 14 6.4504 -6.7733 5.3055 20 1 5.2304 -6.6091 6.1361 21 1 7.6484 -6.7868 6.1829 22 1 6.5519 -5.6442 4.3463 23 6 3.6329 -5.7964 -0.5913 24 1 -0.3633 -0.0059 1.0277 25 1 -0.3633 -0.8871 -0.5189 26 1 -0.3633 0.8929 -0.5088 27 1 2.0947 2.1541 0.0004 28 1 3.8597 -3.2033 -0.0182 29 1 1.5572 -5.0421 -0.4540 30 1 2.7305 -4.8926 2.1802 31 1 2.1333 -6.4529 1.4659 32 1 4.9150 -5.1234 1.0818 33 1 3.8040 -7.9795 1.2306 34 1 5.3886 -7.6465 0.4913 35 1 5.3216 -6.4303 3.0396 36 1 7.2364 -9.4654 5.7757 37 1 3.2461 -6.7400 -0.9763 38 1 4.3092 -5.3005 -1.2875 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275304502.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:29:30 Heat of formation + Delta-G solvation = 36.093082 kcal Electronic energy + Delta-G solvation = -21104.318384 eV Core-core repulsion = 17757.413333 eV Total energy + Delta-G solvation = -3346.905050 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -46.08959 -41.34029 -39.56958 -36.55018 -35.82988 -34.62718 -33.47643 -32.96187 -29.55919 -28.71635 -26.62811 -25.67097 -24.60752 -23.53605 -22.83475 -21.82449 -20.51341 -19.73594 -19.46835 -18.86877 -17.22335 -16.89677 -16.67441 -16.18912 -16.02622 -15.88406 -15.36200 -15.03224 -14.78988 -14.48814 -14.25365 -14.16322 -13.88544 -13.63453 -13.48641 -13.35674 -13.01487 -12.75054 -12.31892 -12.18268 -11.88184 -11.75514 -11.46504 -11.43665 -11.39361 -11.18154 -10.90082 -10.61746 -10.13275 -9.27097 -8.03244 -5.35770 -0.33708 1.03357 1.36537 1.40124 1.46965 1.47443 1.81445 2.11468 2.47799 3.15960 3.28257 3.47241 3.52576 3.56434 3.68240 3.85770 3.93661 3.95195 4.11946 4.29031 4.53337 4.71511 4.73645 4.78135 4.83003 4.87658 4.90589 4.93036 5.00310 5.13286 5.21967 5.27521 5.31091 5.60515 5.76801 6.21473 6.22266 6.83896 6.98680 7.08825 7.86652 8.04677 9.18638 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.022992 B = 0.003533 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.497390 B = 7922.538343 C = 8564.930085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.118 4.118 3 C -0.003 4.003 4 N -0.365 5.365 5 O 0.105 5.895 6 C -0.110 4.110 7 C 0.610 3.390 8 O -0.536 6.536 9 N -0.687 5.687 10 C 0.125 3.875 11 C -0.144 4.144 12 C -0.120 4.120 13 C 0.162 3.838 14 N -0.759 5.759 15 C -0.234 4.234 16 H 0.056 0.944 17 C -0.066 4.066 18 N -0.986 5.986 19 Si 0.956 3.044 20 H -0.280 1.280 21 H -0.295 1.295 22 H -0.251 1.251 23 C -0.116 4.116 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.103 0.897 27 H 0.234 0.766 28 H 0.416 0.584 29 H 0.108 0.892 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.027 0.973 34 H 0.025 0.975 35 H 0.365 0.635 36 H 0.258 0.742 37 H 0.111 0.889 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.161 23.134 -14.580 30.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.123 4.123 3 C -0.181 4.181 4 N -0.066 5.066 5 O 0.035 5.965 6 C -0.176 4.176 7 C 0.395 3.605 8 O -0.414 6.414 9 N -0.338 5.338 10 C 0.021 3.979 11 C -0.183 4.183 12 C -0.139 4.139 13 C 0.036 3.964 14 N -0.405 5.405 15 C -0.365 4.365 16 H 0.074 0.926 17 C -0.258 4.258 18 N -0.637 5.637 19 Si 0.783 3.217 20 H -0.206 1.206 21 H -0.222 1.222 22 H -0.176 1.176 23 C -0.155 4.155 24 H 0.104 0.896 25 H 0.093 0.907 26 H 0.121 0.879 27 H 0.251 0.749 28 H 0.254 0.746 29 H 0.126 0.874 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.045 0.955 34 H 0.043 0.957 35 H 0.198 0.802 36 H 0.066 0.934 37 H 0.129 0.871 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.736 23.220 -14.604 30.243 hybrid contribution 0.233 0.292 1.145 1.204 sum -12.503 23.513 -13.460 29.838 Atomic orbital electron populations 1.20410 0.84951 1.04808 1.04039 1.22047 1.00029 0.90109 1.00108 1.25607 0.86604 1.03539 1.02315 1.73770 1.24448 0.91285 1.17140 1.84953 1.28149 1.15684 1.67749 1.24002 0.85269 0.96142 1.12159 1.16548 0.85476 0.81909 0.76599 1.90837 1.18102 1.81027 1.51392 1.45560 1.10027 1.05576 1.72600 1.21907 1.00206 0.78604 0.97233 1.23531 0.96823 1.00724 0.97200 1.22857 0.96625 0.96562 0.97827 1.20827 0.94993 0.95606 0.84948 1.42757 1.72399 1.06789 1.18523 1.19087 1.29602 0.88689 0.99142 0.92569 1.25526 1.01185 1.00412 0.98645 1.69889 1.47087 1.28593 1.18087 0.85394 0.77090 0.80487 0.78726 1.20584 1.22223 1.17560 1.23233 0.96754 1.00184 0.95294 0.89551 0.90660 0.87884 0.74941 0.74650 0.87449 0.92285 0.88811 0.89062 0.95473 0.95709 0.80209 0.93352 0.87094 0.88920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.04 9.95 71.24 0.71 -0.33 16 2 C -0.12 -1.91 6.37 -19.45 -0.12 -2.03 16 3 C 0.00 -0.04 12.14 85.69 1.04 1.00 16 4 N -0.37 -7.22 12.04 -58.54 -0.70 -7.93 16 5 O 0.11 2.12 11.04 65.82 0.73 2.85 16 6 C -0.11 -2.16 7.29 24.39 0.18 -1.98 16 7 C 0.61 13.14 7.82 86.69 0.68 13.81 16 8 O -0.54 -14.03 14.73 -4.00 -0.06 -14.08 16 9 N -0.69 -12.75 5.26 -443.21 -2.33 -15.09 16 10 C 0.13 2.44 4.30 45.52 0.20 2.63 16 11 C -0.14 -3.50 7.45 31.21 0.23 -3.27 16 12 C -0.12 -3.06 3.65 -10.17 -0.04 -3.10 16 13 C 0.16 5.82 6.10 86.38 0.53 6.34 16 14 N -0.76 -35.30 5.41 -343.45 -1.86 -37.15 16 15 C -0.23 -13.51 10.47 84.03 0.88 -12.63 16 16 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 17 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 18 N -0.99 -64.00 13.97 21.65 0.30 -63.70 16 19 Si 0.96 46.00 27.74 68.60 1.90 47.90 16 20 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 21 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 22 H -0.25 -10.84 6.52 99.48 0.65 -10.19 16 23 C -0.12 -2.09 7.38 31.12 0.23 -1.86 16 24 H 0.09 0.98 8.14 -2.39 -0.02 0.97 16 25 H 0.07 1.20 6.73 -2.39 -0.02 1.18 16 26 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 27 H 0.23 1.30 8.06 -2.91 -0.02 1.28 16 28 H 0.42 6.42 8.53 -92.71 -0.79 5.63 16 29 H 0.11 2.13 7.50 -2.38 -0.02 2.12 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.09 2.34 7.90 -2.39 -0.02 2.32 16 32 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.03 1.00 7.85 -2.39 -0.02 0.98 16 34 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.36 16.20 5.53 -92.70 -0.51 15.69 16 36 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 37 H 0.11 1.82 8.10 -2.39 -0.02 1.80 16 38 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -73.82 324.76 2.69 -71.13 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: -0.27 Total: 20.98 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: 4.98 Total: -4.91 kcal Atomic # 7 Polarization: -119.27 SS G_CDS: -4.59 Total: -123.86 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.67 Total: -11.23 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.90 Total: 47.90 kcal Total: -73.82 2.69 -71.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275304502.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.225 kcal (2) G-P(sol) polarization free energy of solvation -73.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds