Wall clock time and date at job start Tue Mar 31 2020 02:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29935 * 125.37873 * 2 1 4 4 C 1.36063 * 108.47842 * 179.97438 * 3 2 1 5 5 C 1.47424 * 126.44754 * 180.02562 * 4 3 2 6 6 O 1.21617 * 119.99488 * 179.97438 * 5 4 3 7 7 N 1.34772 * 120.00245 * 359.97438 * 5 4 3 8 8 C 1.46497 * 120.00271 * 179.97438 * 7 5 4 9 9 C 1.53783 * 113.61553 * 254.13690 * 8 7 5 10 10 C 1.54050 * 86.98455 * 270.83400 * 9 8 7 11 11 C 1.52995 * 113.62349 * 220.01746 * 10 9 8 12 12 N 1.46490 * 109.47656 * 272.49860 * 11 10 9 13 13 C 1.36935 * 120.00684 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99617 * 0.02562 * 13 12 11 15 15 C 1.38811 * 120.00557 * 180.02562 * 13 12 11 16 16 N 1.31617 * 119.99658 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00225 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47315 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47454 * 119.99728 * 17 15 13 20 20 H 1.48499 * 109.47327 * 239.99875 * 17 15 13 21 21 C 1.53778 * 113.61780 * 156.52695 * 8 7 5 22 22 C 1.36093 * 107.10260 * 0.02562 * 4 3 2 23 23 O 1.34053 * 125.37889 * 180.26784 * 2 1 3 24 24 H 1.09003 * 109.46977 * 90.00112 * 1 2 3 25 25 H 1.08997 * 109.46958 * 209.99992 * 1 2 3 26 26 H 1.09001 * 109.47124 * 330.00369 * 1 2 3 27 27 H 0.97003 * 119.99725 * 359.97438 * 7 5 4 28 28 H 1.09005 * 112.84757 * 25.32815 * 8 7 5 29 29 H 1.08993 * 113.61443 * 25.42739 * 9 8 7 30 30 H 1.08995 * 113.61240 * 156.33360 * 9 8 7 31 31 H 1.09001 * 113.68670 * 89.12357 * 10 9 8 32 32 H 1.09001 * 109.46660 * 32.49982 * 11 10 9 33 33 H 1.09001 * 109.47240 * 152.49137 * 11 10 9 34 34 H 0.97005 * 119.99819 * 0.02562 * 12 11 10 35 35 H 0.97006 * 119.99955 * 179.97438 * 16 15 13 36 36 H 1.08995 * 113.61703 * 203.66746 * 21 8 7 37 37 H 1.09001 * 113.61341 * 334.48313 * 21 8 7 38 38 H 1.08002 * 126.52257 * 179.97438 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6639 0.0006 5 6 4.7439 1.5439 0.0013 6 8 5.8605 1.0618 0.0023 7 7 4.5879 2.8826 0.0009 8 6 5.7632 3.7571 0.0022 9 6 6.0258 4.4340 1.3578 10 6 5.1113 5.5751 0.8733 11 6 5.6117 6.9682 1.2603 12 7 5.1057 7.3170 2.5900 13 6 5.4258 8.5252 3.1493 14 1 6.0510 9.2213 2.6098 15 6 4.9467 8.8555 4.4095 16 7 4.1843 8.0075 5.0668 17 14 5.3828 10.5040 5.1721 18 1 6.2457 11.2694 4.2366 19 1 4.1393 11.2706 5.4388 20 1 6.1108 10.2825 6.4473 21 6 5.4866 5.1616 -0.5595 22 6 3.5660 -0.6971 0.0003 23 8 2.2832 -1.0930 -0.0051 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 3.6973 3.2670 -0.0002 28 1 6.6453 3.2813 -0.4264 29 1 5.6241 3.8813 2.2070 30 1 7.0631 4.7368 1.5009 31 1 4.0583 5.4228 1.1100 32 1 6.7016 6.9719 1.2738 33 1 5.2549 7.6974 0.5329 34 1 4.5444 6.6917 3.0747 35 1 3.8498 8.2381 5.9476 36 1 6.3767 5.6629 -0.9396 37 1 4.6508 5.1956 -1.2583 38 1 4.4362 -1.3367 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282002296.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:44 Heat of formation + Delta-G solvation = 15.075194 kcal Electronic energy + Delta-G solvation = -20798.632100 eV Core-core repulsion = 17450.815646 eV Total energy + Delta-G solvation = -3347.816454 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.72104 -40.10079 -38.25086 -35.21840 -34.49857 -33.06954 -32.46965 -30.78976 -28.22882 -26.90743 -25.47013 -24.67462 -23.14348 -21.94359 -21.32442 -20.78292 -19.01300 -18.39062 -17.22357 -17.03017 -16.69281 -15.97074 -14.97004 -14.94206 -14.73441 -14.30145 -14.21615 -13.94281 -13.57853 -13.53913 -13.29624 -12.91148 -12.76722 -12.33111 -12.10138 -11.67814 -11.49628 -11.12278 -11.00774 -10.82077 -10.50211 -10.30986 -10.23791 -10.04340 -9.79076 -9.58214 -9.33310 -8.96941 -8.81040 -6.86147 -5.72324 -3.00373 0.83570 1.72434 2.25988 2.96205 3.14455 3.45812 3.51209 3.53626 3.58077 4.47813 4.52546 4.61360 4.71563 4.86111 4.91408 4.96245 5.12807 5.15472 5.18035 5.31229 5.40677 5.61930 5.70734 5.81522 5.90967 5.97372 6.05124 6.15503 6.27803 6.34370 6.46458 6.64398 6.82990 6.98110 7.12815 7.49171 7.74181 8.06537 8.46886 9.57815 10.17589 10.51986 11.50767 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.022769 B = 0.003117 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.420491 B = 8981.344911 C = 9724.178900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.197 3.803 3 N -0.461 5.461 4 C -0.069 4.069 5 C 0.604 3.396 6 O -0.539 6.539 7 N -0.689 5.689 8 C 0.114 3.886 9 C -0.138 4.138 10 C -0.114 4.114 11 C 0.163 3.837 12 N -0.732 5.732 13 C -0.237 4.237 14 H 0.070 0.930 15 C -0.016 4.016 16 N -0.934 5.934 17 Si 0.906 3.094 18 H -0.281 1.281 19 H -0.292 1.292 20 H -0.292 1.292 21 C -0.137 4.137 22 C 0.011 3.989 23 O -0.198 6.198 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.105 0.895 27 H 0.411 0.589 28 H 0.100 0.900 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.020 0.980 33 H 0.018 0.982 34 H 0.383 0.617 35 H 0.254 0.746 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.648 -18.814 -13.819 24.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.012 4.012 3 N -0.191 5.191 4 C -0.189 4.189 5 C 0.389 3.611 6 O -0.416 6.416 7 N -0.339 5.339 8 C 0.009 3.991 9 C -0.177 4.177 10 C -0.132 4.132 11 C 0.035 3.965 12 N -0.376 5.376 13 C -0.368 4.368 14 H 0.088 0.912 15 C -0.212 4.212 16 N -0.583 5.583 17 Si 0.738 3.262 18 H -0.206 1.206 19 H -0.219 1.219 20 H -0.219 1.219 21 C -0.175 4.175 22 C -0.063 4.063 23 O -0.084 6.084 24 H 0.113 0.887 25 H 0.109 0.891 26 H 0.124 0.876 27 H 0.247 0.753 28 H 0.118 0.882 29 H 0.087 0.913 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.038 0.962 33 H 0.036 0.964 34 H 0.217 0.783 35 H 0.064 0.936 36 H 0.114 0.886 37 H 0.088 0.912 38 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -5.009 -18.357 -13.809 23.511 hybrid contribution -0.099 0.247 0.762 0.807 sum -5.108 -18.110 -13.047 22.898 Atomic orbital electron populations 1.20340 0.80756 1.05589 1.04962 1.26374 0.96717 0.78228 0.99880 1.70788 1.00700 1.29975 1.17674 1.21811 0.92151 0.93090 1.11877 1.16712 0.86109 0.81962 0.76293 1.90821 1.24273 1.75416 1.51138 1.45483 1.10488 1.04944 1.72954 1.22012 0.88480 0.89931 0.98669 1.23460 1.01003 0.96835 0.96362 1.22816 0.99796 0.96152 0.94472 1.20631 0.95951 0.91527 0.88365 1.42366 1.60840 1.19110 1.15305 1.19295 1.25121 0.93664 0.98758 0.91190 1.24742 1.00578 0.98415 0.97452 1.69677 1.39000 1.35597 1.14010 0.86120 0.77471 0.83574 0.79069 1.20579 1.21907 1.21916 1.23301 1.02503 0.94368 0.97378 1.25276 0.84817 0.95664 1.00553 1.84392 1.16731 1.37971 1.69329 0.88667 0.89090 0.87649 0.75339 0.88158 0.91274 0.88960 0.89336 0.96202 0.96386 0.78319 0.93639 0.88553 0.91154 0.75268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.28 10.51 36.01 0.38 0.10 16 2 C 0.20 1.82 8.30 -13.08 -0.11 1.71 16 3 N -0.46 -5.48 11.06 -7.65 -0.08 -5.56 16 4 C -0.07 -0.86 6.99 -83.02 -0.58 -1.44 16 5 C 0.60 8.60 7.81 -12.52 -0.10 8.50 16 6 O -0.54 -8.87 16.51 5.26 0.09 -8.78 16 7 N -0.69 -9.21 5.26 -54.09 -0.28 -9.49 16 8 C 0.11 1.54 4.30 -67.12 -0.29 1.25 16 9 C -0.14 -2.16 7.45 -25.78 -0.19 -2.35 16 10 C -0.11 -1.84 3.64 -89.67 -0.33 -2.17 16 11 C 0.16 3.32 6.10 -4.05 -0.02 3.29 16 12 N -0.73 -19.04 5.60 -59.92 -0.34 -19.37 16 13 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 14 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 15 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 16 N -0.93 -28.83 13.06 55.49 0.72 -28.11 16 17 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 20 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 21 C -0.14 -1.75 7.38 -25.92 -0.19 -1.94 16 22 C 0.01 0.11 11.95 29.96 0.36 0.46 16 23 O -0.20 -1.85 10.73 6.51 0.07 -1.78 16 24 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 25 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.41 5.18 8.43 -40.82 -0.34 4.84 16 28 H 0.10 1.37 7.50 -51.93 -0.39 0.98 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.09 1.43 7.90 -51.93 -0.41 1.02 16 31 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 32 H 0.02 0.41 7.85 -51.93 -0.41 0.00 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.38 10.50 7.67 -40.82 -0.31 10.19 16 35 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.10 1.13 8.10 -51.93 -0.42 0.71 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.23 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 331.65 15.07 5.00 5.00 Total: -1.00 -34.80 331.65 -6.38 -41.18 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -5.21 Total: 9.22 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -1.32 Total: -0.09 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: 0.02 Total: -62.53 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.16 Total: -10.56 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.80 -6.38 -41.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282002296.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.258 kcal (2) G-P(sol) polarization free energy of solvation -34.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds