Wall clock time and date at job start Tue Mar 31 2020 02:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29935 * 125.37873 * 2 1 4 4 C 1.36063 * 108.47842 * 179.97438 * 3 2 1 5 5 C 1.47424 * 126.44754 * 180.02562 * 4 3 2 6 6 O 1.21617 * 119.99488 * 179.97438 * 5 4 3 7 7 N 1.34772 * 120.00245 * 359.97438 * 5 4 3 8 8 C 1.46497 * 120.00271 * 179.97438 * 7 5 4 9 9 C 1.53783 * 113.61553 * 254.13690 * 8 7 5 10 10 C 1.54050 * 86.98455 * 270.83400 * 9 8 7 11 11 C 1.52995 * 113.62349 * 220.01746 * 10 9 8 12 12 N 1.46490 * 109.47656 * 272.49860 * 11 10 9 13 13 C 1.36935 * 120.00684 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99617 * 0.02562 * 13 12 11 15 15 C 1.38811 * 120.00557 * 180.02562 * 13 12 11 16 16 N 1.31617 * 119.99658 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00225 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47315 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47454 * 119.99728 * 17 15 13 20 20 H 1.48499 * 109.47327 * 239.99875 * 17 15 13 21 21 C 1.53778 * 113.61780 * 156.52695 * 8 7 5 22 22 C 1.36093 * 107.10260 * 0.02562 * 4 3 2 23 23 O 1.34053 * 125.37889 * 180.26784 * 2 1 3 24 24 H 1.09003 * 109.46977 * 90.00112 * 1 2 3 25 25 H 1.08997 * 109.46958 * 209.99992 * 1 2 3 26 26 H 1.09001 * 109.47124 * 330.00369 * 1 2 3 27 27 H 0.97003 * 119.99725 * 359.97438 * 7 5 4 28 28 H 1.09005 * 112.84757 * 25.32815 * 8 7 5 29 29 H 1.08993 * 113.61443 * 25.42739 * 9 8 7 30 30 H 1.08995 * 113.61240 * 156.33360 * 9 8 7 31 31 H 1.09001 * 113.68670 * 89.12357 * 10 9 8 32 32 H 1.09001 * 109.46660 * 32.49982 * 11 10 9 33 33 H 1.09001 * 109.47240 * 152.49137 * 11 10 9 34 34 H 0.97005 * 119.99819 * 0.02562 * 12 11 10 35 35 H 0.97006 * 119.99955 * 179.97438 * 16 15 13 36 36 H 1.08995 * 113.61703 * 203.66746 * 21 8 7 37 37 H 1.09001 * 113.61341 * 334.48313 * 21 8 7 38 38 H 1.08002 * 126.52257 * 179.97438 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6639 0.0006 5 6 4.7439 1.5439 0.0013 6 8 5.8605 1.0618 0.0023 7 7 4.5879 2.8826 0.0009 8 6 5.7632 3.7571 0.0022 9 6 6.0258 4.4340 1.3578 10 6 5.1113 5.5751 0.8733 11 6 5.6117 6.9682 1.2603 12 7 5.1057 7.3170 2.5900 13 6 5.4258 8.5252 3.1493 14 1 6.0510 9.2213 2.6098 15 6 4.9467 8.8555 4.4095 16 7 4.1843 8.0075 5.0668 17 14 5.3828 10.5040 5.1721 18 1 6.2457 11.2694 4.2366 19 1 4.1393 11.2706 5.4388 20 1 6.1108 10.2825 6.4473 21 6 5.4866 5.1616 -0.5595 22 6 3.5660 -0.6971 0.0003 23 8 2.2832 -1.0930 -0.0051 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 3.6973 3.2670 -0.0002 28 1 6.6453 3.2813 -0.4264 29 1 5.6241 3.8813 2.2070 30 1 7.0631 4.7368 1.5009 31 1 4.0583 5.4228 1.1100 32 1 6.7016 6.9719 1.2738 33 1 5.2549 7.6974 0.5329 34 1 4.5444 6.6917 3.0747 35 1 3.8498 8.2381 5.9476 36 1 6.3767 5.6629 -0.9396 37 1 4.6508 5.1956 -1.2583 38 1 4.4362 -1.3367 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282002296.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:44 Heat of formation + Delta-G solvation = -12.299576 kcal Electronic energy + Delta-G solvation = -20799.819159 eV Core-core repulsion = 17450.815646 eV Total energy + Delta-G solvation = -3349.003513 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.48046 -41.25028 -39.46290 -36.36395 -36.01826 -34.39880 -33.17944 -32.69818 -28.96962 -28.47836 -26.66109 -25.91655 -24.79305 -23.01900 -22.54976 -21.71906 -20.31031 -19.30883 -19.05756 -17.97534 -17.56014 -17.09787 -16.70284 -16.10692 -15.99161 -15.63357 -15.35761 -15.08004 -14.88334 -14.67428 -14.46550 -13.89539 -13.73769 -13.41089 -13.27945 -13.13441 -12.93873 -12.74057 -12.36621 -12.12723 -11.95506 -11.92887 -11.79476 -11.40832 -11.37070 -11.16839 -10.87520 -10.24177 -9.96210 -8.98421 -7.95192 -5.23864 0.02157 0.91021 1.46769 1.47948 1.56288 1.58140 1.98332 2.14517 2.55998 2.85857 3.37761 3.54075 3.57282 3.67886 3.76761 3.90800 3.92833 4.31894 4.40346 4.50275 4.52835 4.67324 4.70847 4.72669 4.81941 4.83250 4.87380 4.90521 4.96663 5.12846 5.22985 5.24448 5.32573 5.48705 5.61590 6.24645 6.27561 6.54152 6.99741 7.33081 8.10909 8.33266 9.28818 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.022769 B = 0.003117 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.420491 B = 8981.344911 C = 9724.178900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.202 3.798 3 N -0.492 5.492 4 C -0.104 4.104 5 C 0.602 3.398 6 O -0.568 6.568 7 N -0.687 5.687 8 C 0.123 3.877 9 C -0.141 4.141 10 C -0.113 4.113 11 C 0.161 3.839 12 N -0.747 5.747 13 C -0.244 4.244 14 H 0.076 0.924 15 C -0.079 4.079 16 N -0.971 5.971 17 Si 0.975 3.025 18 H -0.265 1.265 19 H -0.292 1.292 20 H -0.294 1.294 21 C -0.114 4.114 22 C 0.028 3.972 23 O -0.195 6.195 24 H 0.115 0.885 25 H 0.113 0.887 26 H 0.107 0.893 27 H 0.414 0.586 28 H 0.104 0.896 29 H 0.047 0.953 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.024 0.976 33 H 0.023 0.977 34 H 0.372 0.628 35 H 0.251 0.749 36 H 0.114 0.886 37 H 0.088 0.912 38 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.958 -19.149 -15.137 25.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.007 4.007 3 N -0.223 5.223 4 C -0.223 4.223 5 C 0.389 3.611 6 O -0.448 6.448 7 N -0.336 5.336 8 C 0.018 3.982 9 C -0.180 4.180 10 C -0.132 4.132 11 C 0.035 3.965 12 N -0.389 5.389 13 C -0.376 4.376 14 H 0.094 0.906 15 C -0.271 4.271 16 N -0.622 5.622 17 Si 0.804 3.196 18 H -0.189 1.189 19 H -0.219 1.219 20 H -0.221 1.221 21 C -0.153 4.153 22 C -0.047 4.047 23 O -0.081 6.081 24 H 0.133 0.867 25 H 0.131 0.869 26 H 0.125 0.875 27 H 0.250 0.750 28 H 0.122 0.878 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.097 0.903 32 H 0.042 0.958 33 H 0.040 0.960 34 H 0.203 0.797 35 H 0.059 0.941 36 H 0.132 0.868 37 H 0.107 0.893 38 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -5.312 -18.675 -15.173 24.641 hybrid contribution -0.038 0.288 1.140 1.176 sum -5.350 -18.387 -14.033 23.741 Atomic orbital electron populations 1.20624 0.77663 1.06738 1.06567 1.27293 0.98123 0.77559 0.97753 1.70755 1.00746 1.31337 1.19421 1.21704 0.92000 0.93873 1.14691 1.16985 0.86405 0.82213 0.75499 1.90791 1.25444 1.75875 1.52654 1.45488 1.10576 1.04923 1.72632 1.21894 0.88792 0.90422 0.97065 1.23470 1.00725 0.96873 0.96912 1.22727 0.99182 0.93839 0.97436 1.20818 0.95956 0.93873 0.85856 1.42613 1.60844 1.18271 1.17166 1.19716 1.24366 0.94575 0.98966 0.90574 1.25604 1.01127 1.02148 0.98219 1.69838 1.40564 1.37614 1.14227 0.85046 0.77162 0.79380 0.78018 1.18925 1.21912 1.22098 1.23224 1.03803 0.92973 0.95268 1.25757 0.85641 0.95111 0.98146 1.84436 1.16549 1.37982 1.69182 0.86676 0.86894 0.87459 0.74951 0.87828 0.93385 0.88902 0.90289 0.95815 0.95952 0.79671 0.94062 0.86775 0.89343 0.72782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.42 10.51 71.24 0.75 0.33 16 2 C 0.20 3.45 8.30 88.39 0.73 4.18 16 3 N -0.49 -11.43 11.06 -293.03 -3.24 -14.67 16 4 C -0.10 -2.55 6.99 40.41 0.28 -2.26 16 5 C 0.60 17.14 7.81 86.66 0.68 17.82 16 6 O -0.57 -18.68 16.51 -4.08 -0.07 -18.75 16 7 N -0.69 -18.20 5.26 -443.30 -2.33 -20.53 16 8 C 0.12 3.23 4.30 45.52 0.20 3.43 16 9 C -0.14 -4.42 7.45 31.21 0.23 -4.19 16 10 C -0.11 -3.62 3.64 -10.18 -0.04 -3.66 16 11 C 0.16 6.48 6.10 86.38 0.53 7.01 16 12 N -0.75 -39.19 5.60 -343.48 -1.92 -41.11 16 13 C -0.24 -14.02 9.99 84.03 0.84 -13.18 16 14 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 15 C -0.08 -4.65 5.50 84.86 0.47 -4.19 16 16 N -0.97 -60.97 13.06 21.65 0.28 -60.69 16 17 Si 0.97 47.00 29.55 68.60 2.03 49.03 16 18 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 19 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 20 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 21 C -0.11 -2.69 7.38 31.12 0.23 -2.46 16 22 C 0.03 0.51 11.95 67.32 0.80 1.32 16 23 O -0.20 -3.31 10.73 0.38 0.00 -3.31 16 24 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 25 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 26 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.41 10.38 8.43 -92.71 -0.78 9.60 16 28 H 0.10 2.72 7.50 -2.38 -0.02 2.70 16 29 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.09 2.88 7.90 -2.39 -0.02 2.86 16 31 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.02 0.95 7.85 -2.39 -0.02 0.93 16 33 H 0.02 0.89 8.14 -2.39 -0.02 0.88 16 34 H 0.37 20.91 7.67 -92.70 -0.71 20.20 16 35 H 0.25 15.17 8.31 -92.70 -0.77 14.40 16 36 H 0.11 2.34 8.10 -2.39 -0.02 2.32 16 37 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.26 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -75.25 331.65 0.05 -75.20 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: -0.40 Total: 30.68 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 5.70 Total: 4.16 kcal Atomic # 7 Polarization: -129.79 SS G_CDS: -7.21 Total: -137.00 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.06 Total: -22.06 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -75.25 0.05 -75.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282002296.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.898 kcal (2) G-P(sol) polarization free energy of solvation -75.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds