Wall clock time and date at job start Tue Mar 31 2020 02:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35319 * 128.03897 * 2 1 4 4 O 1.34015 * 106.66977 * 180.23931 * 3 2 1 5 5 N 1.20903 * 111.84281 * 359.75040 * 4 3 2 6 6 C 1.30976 * 111.44392 * 359.97438 * 5 4 3 7 7 C 1.48330 * 126.94308 * 179.97438 * 6 5 4 8 8 O 1.21497 * 120.00679 * 180.02562 * 7 6 5 9 9 N 1.34781 * 119.99767 * 0.02680 * 7 6 5 10 10 C 1.46500 * 119.99985 * 179.97438 * 9 7 6 11 11 C 1.53785 * 113.68813 * 105.94035 * 10 9 7 12 12 C 1.53779 * 87.08093 * 139.99098 * 11 10 9 13 13 C 1.52999 * 113.61451 * 220.01770 * 12 11 10 14 14 N 1.46504 * 109.47047 * 272.49902 * 13 12 11 15 15 C 1.36931 * 119.99912 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99911 * 0.02562 * 15 14 13 17 17 C 1.38810 * 119.99951 * 179.97438 * 15 14 13 18 18 N 1.31618 * 120.00201 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00093 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47229 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47312 * 120.00302 * 19 17 15 22 22 H 1.48502 * 109.47218 * 240.00534 * 19 17 15 23 23 C 1.53781 * 113.61339 * 203.47543 * 10 9 7 24 24 H 1.09000 * 109.47268 * 270.15905 * 1 2 3 25 25 H 1.09006 * 109.47475 * 30.16298 * 1 2 3 26 26 H 1.09002 * 109.46836 * 150.15479 * 1 2 3 27 27 H 1.08003 * 126.66555 * 359.95547 * 3 2 1 28 28 H 0.96998 * 119.99866 * 0.02562 * 9 7 6 29 29 H 1.09002 * 112.85221 * 334.67013 * 10 9 7 30 30 H 1.09003 * 113.60734 * 254.54218 * 11 10 9 31 31 H 1.08996 * 113.61146 * 25.43716 * 11 10 9 32 32 H 1.09005 * 113.69135 * 89.12376 * 12 11 10 33 33 H 1.09003 * 109.47100 * 32.49589 * 13 12 11 34 34 H 1.08995 * 109.47213 * 152.50009 * 13 12 11 35 35 H 0.97002 * 119.99937 * 359.97438 * 14 13 12 36 36 H 0.97000 * 120.00305 * 179.97438 * 18 17 15 37 37 H 1.09005 * 113.61302 * 334.48230 * 23 10 9 38 38 H 1.08996 * 113.61527 * 105.30394 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0658 0.0000 4 8 3.5888 0.5774 -0.0054 5 7 3.5988 -0.6315 -0.0036 6 6 2.3837 -1.1204 0.0036 7 6 1.9992 -2.5530 0.0072 8 8 0.8256 -2.8671 0.0135 9 7 2.9519 -3.5065 0.0036 10 6 2.5722 -4.9214 0.0077 11 6 2.7783 -5.6204 -1.3465 12 6 3.2841 -6.8366 -0.5528 13 6 4.4881 -7.5294 -1.1941 14 7 4.0203 -8.5297 -2.1567 15 6 4.9253 -9.2801 -2.8587 16 1 5.9840 -9.1348 -2.7024 17 6 4.4821 -10.2283 -3.7704 18 7 3.1919 -10.4058 -3.9606 19 14 5.7168 -11.2525 -4.7276 20 1 7.0945 -10.8632 -4.3331 21 1 5.5045 -12.6914 -4.4279 22 1 5.5329 -11.0175 -6.1823 23 6 3.6637 -5.8505 0.5646 24 1 -0.3634 0.0029 1.0277 25 1 -0.3634 0.8885 -0.5164 26 1 -0.3633 -0.8914 -0.5114 27 1 2.0559 2.1075 -0.0007 28 1 3.8889 -3.2558 -0.0011 29 1 1.5879 -5.0943 0.4430 30 1 1.8504 -5.8070 -1.8871 31 1 3.5441 -5.1542 -1.9663 32 1 2.4954 -7.5340 -0.2702 33 1 5.1017 -6.7895 -1.7082 34 1 5.0803 -8.0184 -0.4207 35 1 3.0694 -8.6605 -2.2968 36 1 2.8821 -11.0682 -4.5980 37 1 4.6718 -5.4473 0.4671 38 1 3.4514 -6.2217 1.5672 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282066572.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:11 Heat of formation + Delta-G solvation = 53.041926 kcal Electronic energy + Delta-G solvation = -20789.699386 eV Core-core repulsion = 17443.529293 eV Total energy + Delta-G solvation = -3346.170093 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.42866 -40.16123 -38.41411 -35.01858 -34.63082 -33.59925 -32.39530 -30.81688 -28.54837 -26.98808 -25.53781 -25.11630 -23.14048 -22.01670 -21.52513 -20.63171 -19.59690 -18.41631 -18.11357 -17.07360 -16.76873 -16.17295 -15.22301 -14.99204 -14.84467 -14.46285 -14.09192 -13.62004 -13.58275 -13.37511 -13.16016 -12.97097 -12.70810 -12.30319 -11.87970 -11.73622 -11.62737 -11.18924 -10.87604 -10.76455 -10.62534 -10.35656 -10.26825 -10.10333 -9.86748 -9.80774 -9.63042 -9.10369 -8.84024 -6.88553 -5.73982 -3.02380 0.81745 1.32521 2.66903 2.86305 2.93392 3.44774 3.50120 3.52572 3.65066 4.24840 4.50182 4.59189 4.63796 4.72412 4.79622 4.99952 5.06204 5.09562 5.28510 5.31583 5.47486 5.59257 5.66375 5.82262 5.89897 5.92344 6.02859 6.08361 6.20278 6.24665 6.41869 6.57781 6.78902 6.92270 7.23552 7.66286 7.72394 7.91466 8.45101 9.56137 10.15181 10.49755 11.49053 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.033850 B = 0.002757 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.987541 B =10155.351235 C =10310.920465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.151 4.151 3 C -0.069 4.069 4 O 0.124 5.876 5 N -0.330 5.330 6 C -0.028 4.028 7 C 0.597 3.403 8 O -0.521 6.521 9 N -0.700 5.700 10 C 0.116 3.884 11 C -0.138 4.138 12 C -0.110 4.110 13 C 0.165 3.835 14 N -0.732 5.732 15 C -0.238 4.238 16 H 0.070 0.930 17 C -0.016 4.016 18 N -0.933 5.933 19 Si 0.906 3.094 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.137 4.137 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.224 0.776 28 H 0.406 0.594 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.019 0.981 34 H 0.020 0.980 35 H 0.384 0.616 36 H 0.254 0.746 37 H 0.086 0.914 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.293 24.671 11.169 27.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.155 4.155 3 C -0.149 4.149 4 O 0.048 5.952 5 N -0.031 5.031 6 C -0.188 4.188 7 C 0.381 3.619 8 O -0.395 6.395 9 N -0.351 5.351 10 C 0.013 3.987 11 C -0.176 4.176 12 C -0.129 4.129 13 C 0.038 3.962 14 N -0.376 5.376 15 C -0.370 4.370 16 H 0.088 0.912 17 C -0.211 4.211 18 N -0.582 5.582 19 Si 0.738 3.262 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.175 4.175 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.107 0.893 27 H 0.240 0.760 28 H 0.241 0.759 29 H 0.134 0.866 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.218 0.782 36 H 0.064 0.936 37 H 0.104 0.896 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.784 23.728 11.113 26.349 hybrid contribution 0.049 -0.256 -0.675 0.724 sum -2.735 23.473 10.438 25.834 Atomic orbital electron populations 1.20237 0.86476 1.04038 1.03250 1.21405 0.99219 0.90089 1.04826 1.25803 0.82347 1.01352 1.05414 1.84775 1.29513 1.15194 1.65701 1.74167 1.21639 0.91699 1.15576 1.23554 0.89562 0.97334 1.08320 1.16908 0.85814 0.82305 0.76871 1.90784 1.17425 1.81584 1.49742 1.45956 1.09543 1.06341 1.73211 1.22819 1.00042 0.77052 0.98834 1.23460 1.02236 0.96058 0.95896 1.22538 0.99810 0.95177 0.95390 1.20600 0.92919 0.91125 0.91592 1.42364 1.06580 1.42178 1.46502 1.19281 0.89374 1.12742 1.15555 0.91196 1.24748 0.95955 1.00101 1.00342 1.69672 1.12006 1.37575 1.38962 0.86120 0.80264 0.80097 0.79741 1.20583 1.21870 1.21885 1.23346 0.98511 0.96369 0.99299 0.90503 0.90958 0.89312 0.75994 0.75868 0.86608 0.90881 0.89699 0.88678 0.96342 0.96270 0.78241 0.93582 0.89563 0.90766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.01 36.00 0.36 -0.27 16 2 C -0.15 -1.36 6.34 -104.12 -0.66 -2.03 16 3 C -0.07 -0.43 12.24 29.69 0.36 -0.06 16 4 O 0.12 1.08 11.18 17.25 0.19 1.27 16 5 N -0.33 -3.66 11.84 33.29 0.39 -3.26 16 6 C -0.03 -0.33 7.19 -82.53 -0.59 -0.92 16 7 C 0.60 8.09 7.85 -12.11 -0.10 7.99 16 8 O -0.52 -8.25 14.96 5.37 0.08 -8.17 16 9 N -0.70 -8.64 5.36 -53.80 -0.29 -8.93 16 10 C 0.12 1.52 4.22 -67.12 -0.28 1.24 16 11 C -0.14 -2.10 7.43 -25.92 -0.19 -2.30 16 12 C -0.11 -1.76 3.75 -89.81 -0.34 -2.10 16 13 C 0.17 3.34 6.10 -4.04 -0.02 3.31 16 14 N -0.73 -18.92 5.60 -59.91 -0.34 -19.25 16 15 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 16 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 17 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 18 N -0.93 -28.75 13.06 55.49 0.72 -28.03 16 19 Si 0.91 22.76 29.55 -169.99 -5.02 17.73 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 23 C -0.14 -1.70 7.39 -25.92 -0.19 -1.89 16 24 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.09 0.88 6.89 -51.93 -0.36 0.52 16 27 H 0.22 0.29 8.06 -52.48 -0.42 -0.13 16 28 H 0.41 4.43 8.47 -40.82 -0.35 4.09 16 29 H 0.12 1.58 7.50 -51.93 -0.39 1.19 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.08 1.33 7.90 -51.93 -0.41 0.92 16 32 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 33 H 0.02 0.38 7.84 -51.93 -0.41 -0.03 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.38 10.43 7.67 -40.82 -0.31 10.11 16 36 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.09 1.00 8.07 -51.93 -0.42 0.58 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 328.28 15.07 4.95 4.95 Total: -1.00 -33.81 328.28 -6.36 -40.16 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -5.15 Total: 8.05 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -1.90 Total: -4.54 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: 0.49 Total: -59.46 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: 0.27 Total: -6.89 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.81 -6.36 -40.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282066572.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.206 kcal (2) G-P(sol) polarization free energy of solvation -33.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds