Wall clock time and date at job start Tue Mar 31 2020 01:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36358 * 120.37984 * 2 1 4 4 C 1.40495 * 119.39566 * 180.25494 * 3 2 1 5 5 O 1.22104 * 119.92280 * 179.73943 * 4 3 2 6 6 N 1.34636 * 120.15136 * 359.71039 * 4 3 2 7 7 C 1.46507 * 119.60913 * 180.02562 * 6 4 3 8 8 C 1.35958 * 120.77991 * 0.02562 * 6 4 3 9 9 C 1.35873 * 120.59809 * 0.02562 * 8 6 4 10 10 N 1.40451 * 120.08783 * 179.97438 * 9 8 6 11 11 C 1.34778 * 119.99766 * 119.72656 * 10 9 8 12 12 O 1.21588 * 120.00034 * 354.92136 * 11 10 9 13 13 N 1.34772 * 119.99587 * 174.92207 * 11 10 9 14 14 C 1.46499 * 119.99667 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.47551 * 324.99692 * 14 13 11 16 16 C 1.53002 * 109.47132 * 84.99847 * 14 13 11 17 17 C 1.50704 * 109.47121 * 204.99475 * 14 13 11 18 18 H 1.07998 * 119.99937 * 0.02562 * 17 14 13 19 19 C 1.37876 * 120.00337 * 179.97438 * 17 14 13 20 20 N 1.31522 * 119.99732 * 0.02562 * 19 17 14 21 21 Si 1.86794 * 120.00341 * 180.02562 * 19 17 14 22 22 H 1.48503 * 109.47089 * 270.00252 * 21 19 17 23 23 H 1.48504 * 109.47190 * 29.99757 * 21 19 17 24 24 H 1.48494 * 109.47296 * 150.00084 * 21 19 17 25 25 H 1.09004 * 109.47101 * 270.30983 * 1 2 3 26 26 H 1.08999 * 109.47248 * 30.29998 * 1 2 3 27 27 H 1.08993 * 109.47887 * 150.30644 * 1 2 3 28 28 H 1.07993 * 120.30254 * 359.97438 * 3 2 1 29 29 H 1.08998 * 109.46982 * 269.97631 * 7 6 4 30 30 H 1.08998 * 109.47136 * 29.98052 * 7 6 4 31 31 H 1.08994 * 109.46658 * 149.97847 * 7 6 4 32 32 H 1.08007 * 119.70684 * 180.02562 * 8 6 4 33 33 H 0.96997 * 119.99800 * 299.73275 * 10 9 8 34 34 H 0.97001 * 120.00363 * 359.97438 * 13 11 10 35 35 H 1.08998 * 109.47222 * 299.99618 * 16 14 13 36 36 H 1.09003 * 109.46859 * 60.00282 * 16 14 13 37 37 H 1.09007 * 109.47156 * 179.97438 * 16 14 13 38 38 H 0.96999 * 120.00066 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1764 0.0000 4 6 3.6013 1.1522 -0.0054 5 8 4.2285 2.1999 -0.0103 6 7 4.2575 -0.0234 -0.0047 7 6 5.7225 -0.0347 -0.0099 8 6 3.5766 -1.2002 0.0007 9 6 2.2180 -1.2132 0.0050 10 7 1.5255 -2.4351 0.0101 11 6 0.6929 -2.7335 1.0271 12 8 0.6110 -1.9884 1.9844 13 7 -0.0489 -3.8579 0.9828 14 6 -0.9543 -4.1821 2.0879 15 1 -0.5110 -3.8555 3.0287 16 6 -2.2908 -3.4672 1.8787 17 6 -1.1823 -5.6711 2.1303 18 1 -0.7006 -6.3120 1.4066 19 6 -2.0051 -6.2155 3.0934 20 7 -2.5913 -5.4352 3.9750 21 14 -2.2872 -8.0613 3.1463 22 1 -3.4598 -8.4072 2.3034 23 1 -1.0832 -8.7611 2.6304 24 1 -2.5427 -8.4831 4.5470 25 1 -0.3633 0.0056 1.0277 26 1 -0.3634 0.8873 -0.5185 27 1 -0.3634 -0.8926 -0.5090 28 1 1.6678 2.1180 -0.0004 29 1 6.0821 -0.0406 -1.0388 30 1 6.0945 0.8539 0.5000 31 1 6.0807 -0.9259 0.5053 32 1 4.1206 -2.1333 0.0016 33 1 1.6465 -3.0641 -0.7182 34 1 0.0162 -4.4522 0.2189 35 1 -2.1259 -2.3902 1.8481 36 1 -2.7341 -3.7939 0.9380 37 1 -2.9646 -3.7088 2.7008 38 1 -3.1704 -5.8181 4.6525 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320705416.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:50 Heat of formation + Delta-G solvation = -51.937206 kcal Electronic energy + Delta-G solvation = -21741.952270 eV Core-core repulsion = 18391.229941 eV Total energy + Delta-G solvation = -3350.722330 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.50372 -40.95060 -38.36809 -36.94723 -36.26466 -35.00950 -34.12432 -31.23036 -30.60389 -29.25045 -27.29419 -27.09063 -24.76957 -23.47461 -22.40991 -21.45032 -19.88808 -19.09078 -18.59092 -17.87585 -17.48133 -17.00791 -16.87804 -16.12304 -15.92309 -15.55277 -15.18476 -15.08015 -14.50547 -14.31251 -14.22354 -14.05858 -13.77162 -13.37603 -13.29688 -12.98144 -12.84572 -12.78594 -12.65346 -12.45475 -12.22513 -12.10234 -11.17759 -11.15270 -11.03607 -10.82960 -10.56092 -10.45552 -9.64361 -8.80504 -8.13163 -6.29782 -0.21069 0.65889 1.46851 1.48888 1.51100 1.59719 2.05897 2.31491 2.46848 2.57406 3.17989 3.47845 3.65507 3.71944 3.84424 4.07121 4.37783 4.46123 4.48126 4.68167 4.76145 4.78898 4.83605 4.85701 5.00389 5.13066 5.17312 5.22001 5.39415 5.48240 5.65368 5.74430 5.75731 5.90843 5.99817 6.16638 6.33422 6.79363 6.92235 7.36841 7.40671 7.83838 8.93081 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.036465 B = 0.003687 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.681920 B = 7591.707249 C = 8023.542482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.033 3.967 3 C -0.267 4.267 4 C 0.503 3.497 5 O -0.602 6.602 6 N -0.490 5.490 7 C 0.055 3.945 8 C 0.143 3.857 9 C 0.043 3.957 10 N -0.669 5.669 11 C 0.698 3.302 12 O -0.628 6.628 13 N -0.716 5.716 14 C 0.291 3.709 15 H -0.002 1.002 16 C -0.134 4.134 17 C -0.543 4.543 18 H 0.076 0.924 19 C 0.014 3.986 20 N -0.918 5.918 21 Si 0.971 3.029 22 H -0.273 1.273 23 H -0.262 1.262 24 H -0.290 1.290 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.150 0.850 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.120 0.880 32 H 0.211 0.789 33 H 0.422 0.578 34 H 0.404 0.596 35 H 0.013 0.987 36 H 0.039 0.961 37 H 0.063 0.937 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.232 3.268 -12.920 18.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.028 3.972 3 C -0.289 4.289 4 C 0.308 3.692 5 O -0.490 6.490 6 N -0.199 5.199 7 C -0.085 4.085 8 C 0.013 3.987 9 C -0.055 4.055 10 N -0.324 5.324 11 C 0.399 3.601 12 O -0.508 6.508 13 N -0.369 5.369 14 C 0.187 3.813 15 H 0.016 0.984 16 C -0.193 4.193 17 C -0.582 4.582 18 H 0.094 0.906 19 C -0.186 4.186 20 N -0.557 5.557 21 Si 0.796 3.204 22 H -0.198 1.198 23 H -0.186 1.186 24 H -0.216 1.216 25 H 0.084 0.916 26 H 0.109 0.891 27 H 0.087 0.913 28 H 0.168 0.832 29 H 0.113 0.887 30 H 0.097 0.903 31 H 0.139 0.861 32 H 0.228 0.772 33 H 0.261 0.739 34 H 0.239 0.761 35 H 0.032 0.968 36 H 0.058 0.942 37 H 0.082 0.918 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.442 4.537 -11.893 17.800 hybrid contribution -0.547 -1.128 -0.080 1.257 sum 11.895 3.408 -11.973 17.218 Atomic orbital electron populations 1.20858 0.90141 1.03610 1.02656 1.20483 0.97456 0.92211 0.87079 1.21802 0.92401 0.99448 1.15273 1.17195 0.89487 0.83061 0.79454 1.90908 1.70092 1.31527 1.56432 1.45325 1.10660 1.05741 1.58190 1.22450 0.74646 1.06001 1.05401 1.22327 0.91913 0.90970 0.93502 1.16411 0.89871 0.85439 1.13798 1.41977 1.46695 1.18781 1.24958 1.16195 0.79328 0.82078 0.82528 1.90888 1.71857 1.52540 1.35556 1.45362 1.43817 1.22924 1.24758 1.18189 0.85406 0.93954 0.83798 0.98362 1.21913 1.00273 0.96075 1.01006 1.21561 1.29108 0.91806 1.15674 0.90611 1.25768 0.95106 1.02936 0.94759 1.70063 1.31153 1.36857 1.17588 0.85367 0.78848 0.79195 0.77036 1.19836 1.18641 1.21617 0.91638 0.89141 0.91265 0.83215 0.88655 0.90343 0.86144 0.77225 0.73858 0.76127 0.96756 0.94156 0.91817 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.24 8.52 71.23 0.61 -2.63 16 2 C 0.03 0.92 5.55 -19.72 -0.11 0.81 16 3 C -0.27 -7.60 9.64 22.38 0.22 -7.39 16 4 C 0.50 14.75 7.40 84.81 0.63 15.37 16 5 O -0.60 -21.51 16.63 -5.66 -0.09 -21.61 16 6 N -0.49 -10.18 2.99 -673.84 -2.01 -12.19 16 7 C 0.05 0.71 10.36 127.77 1.32 2.04 16 8 C 0.14 2.54 10.20 83.50 0.85 3.39 16 9 C 0.04 1.04 5.61 37.79 0.21 1.25 16 10 N -0.67 -15.97 4.76 -317.63 -1.51 -17.48 16 11 C 0.70 25.03 7.12 179.06 1.27 26.31 16 12 O -0.63 -28.93 14.17 -3.99 -0.06 -28.99 16 13 N -0.72 -26.67 5.07 -461.41 -2.34 -29.01 16 14 C 0.29 14.23 2.56 44.25 0.11 14.35 16 15 H 0.00 -0.09 7.58 -2.39 -0.02 -0.11 16 16 C -0.13 -6.47 9.26 71.98 0.67 -5.81 16 17 C -0.54 -27.23 8.73 25.60 0.22 -27.01 16 18 H 0.08 3.49 7.74 -2.91 -0.02 3.47 16 19 C 0.01 0.74 5.30 84.65 0.45 1.19 16 20 N -0.92 -51.37 11.32 21.45 0.24 -51.13 16 21 Si 0.97 40.44 29.54 68.60 2.03 42.47 16 22 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 23 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 24 H -0.29 -12.24 7.11 99.48 0.71 -11.54 16 25 H 0.07 2.26 7.30 -2.38 -0.02 2.24 16 26 H 0.09 2.03 8.09 -2.39 -0.02 2.01 16 27 H 0.07 1.91 7.07 -2.39 -0.02 1.89 16 28 H 0.15 4.06 8.06 -2.91 -0.02 4.03 16 29 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.08 1.33 7.38 -2.39 -0.02 1.31 16 31 H 0.12 0.71 8.01 -2.39 -0.02 0.69 16 32 H 0.21 1.77 8.04 -2.91 -0.02 1.75 16 33 H 0.42 6.49 8.84 -92.71 -0.82 5.67 16 34 H 0.40 12.04 8.56 -92.71 -0.79 11.25 16 35 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.06 3.43 6.07 -2.38 -0.01 3.42 16 38 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -75.58 321.54 2.19 -73.39 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: -0.51 Total: 22.69 kcal Atomic # 6 Polarization: 15.41 SS G_CDS: 6.46 Total: 21.86 kcal Atomic # 7 Polarization: -104.19 SS G_CDS: -5.62 Total: -109.81 kcal Atomic # 8 Polarization: -50.44 SS G_CDS: -0.15 Total: -50.60 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Total: -75.58 2.19 -73.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320705416.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.450 kcal (2) G-P(sol) polarization free energy of solvation -75.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds