Wall clock time and date at job start Tue Mar 31 2020 02:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29933 * 125.38096 * 2 1 4 4 C 1.36066 * 108.48216 * 180.02562 * 3 2 1 5 5 C 1.47416 * 126.44850 * 180.02562 * 4 3 2 6 6 O 1.21621 * 119.99664 * 179.97438 * 5 4 3 7 7 N 1.34774 * 120.00360 * 359.97160 * 5 4 3 8 8 C 1.46500 * 120.00117 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47189 * 179.97438 * 8 7 5 10 10 C 1.30998 * 120.00369 * 127.15150 * 9 8 7 11 11 C 1.50701 * 119.99915 * 7.56046 * 10 9 8 12 12 N 1.46504 * 109.47122 * 127.00217 * 11 10 9 13 13 C 1.36939 * 119.99419 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00727 * 0.02562 * 13 12 11 15 15 C 1.38818 * 119.99461 * 180.02562 * 13 12 11 16 16 N 1.31622 * 120.00107 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 120.00086 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.46813 * 89.99629 * 17 15 13 19 19 H 1.48495 * 109.47177 * 210.00006 * 17 15 13 20 20 H 1.48499 * 109.47053 * 330.00124 * 17 15 13 21 21 C 1.36097 * 107.09772 * 359.97438 * 4 3 2 22 22 C 1.50701 * 126.51846 * 180.26638 * 21 4 3 23 23 O 1.34054 * 125.37746 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.46886 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46727 * 299.99550 * 1 2 3 26 26 H 1.08998 * 109.47254 * 59.99594 * 1 2 3 27 27 H 0.97001 * 120.00027 * 359.97438 * 7 5 4 28 28 H 1.09006 * 109.46883 * 299.99477 * 8 7 5 29 29 H 1.08996 * 109.47303 * 59.99777 * 8 7 5 30 30 H 1.07998 * 119.99743 * 307.15230 * 9 8 7 31 31 H 1.08000 * 120.00230 * 187.55652 * 10 9 8 32 32 H 1.08995 * 109.47203 * 247.00628 * 11 10 9 33 33 H 1.09008 * 109.47271 * 7.00489 * 11 10 9 34 34 H 0.96995 * 120.00198 * 0.02562 * 12 11 10 35 35 H 0.96995 * 119.99988 * 180.02562 * 16 15 13 36 36 H 1.09001 * 109.46375 * 179.71733 * 22 21 4 37 37 H 1.08997 * 109.47415 * 299.70929 * 22 21 4 38 38 H 1.08992 * 109.47387 * 59.71652 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6638 -0.0006 5 6 4.7439 1.5439 -0.0003 6 8 5.8605 1.0618 -0.0004 7 7 4.5879 2.8825 0.0001 8 6 5.7632 3.7570 -0.0001 9 6 5.3181 5.1968 -0.0002 10 6 5.7793 6.0251 0.9038 11 6 6.8796 5.5870 1.8358 12 7 7.9773 6.5559 1.7850 13 6 9.0942 6.3659 2.5542 14 1 9.1662 5.5017 3.1978 15 6 10.1341 7.2843 2.5065 16 7 11.2079 7.1016 3.2453 17 14 10.0094 8.7796 1.3938 18 1 9.3836 9.9008 2.1397 19 1 11.3681 9.1792 0.9475 20 1 9.1771 8.4474 0.2096 21 6 3.5660 -0.6971 -0.0003 22 6 4.7802 -1.5897 0.0048 23 8 2.2831 -1.0930 -0.0005 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 3.6973 3.2670 -0.0002 28 1 6.3617 3.5615 0.8897 29 1 6.3611 3.5619 -0.8903 30 1 4.6189 5.5457 -0.7457 31 1 5.3711 7.0220 0.9812 32 1 6.4926 5.5293 2.8530 33 1 7.2458 4.6068 1.5302 34 1 7.9125 7.3323 1.2073 35 1 11.9343 7.7435 3.2123 36 1 4.4641 -2.6329 0.0087 37 1 5.3783 -1.3947 -0.8853 38 1 5.3762 -1.3873 0.8946 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321306281.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:21 Heat of formation + Delta-G solvation = -9.193655 kcal Electronic energy + Delta-G solvation = -20522.230186 eV Core-core repulsion = 17173.361356 eV Total energy + Delta-G solvation = -3348.868830 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.53098 -40.69116 -38.11490 -36.27926 -35.99145 -34.41583 -34.08560 -32.81119 -30.98563 -28.82232 -27.37968 -26.20646 -24.15889 -24.04771 -22.48074 -21.55102 -20.54464 -19.52056 -18.49035 -18.16177 -17.58381 -16.87032 -16.72234 -16.40234 -15.90751 -15.48433 -15.18494 -15.10670 -14.86506 -14.47167 -14.33559 -14.33009 -14.15621 -13.61620 -13.51684 -13.48117 -13.20822 -13.06565 -12.75232 -12.36396 -12.21294 -11.91558 -11.88521 -11.68606 -11.40289 -11.06886 -10.45812 -10.08305 -9.78043 -9.28329 -8.05203 -5.40359 -0.03691 0.90132 0.96963 1.37640 1.42293 1.43236 1.50010 2.13731 2.17853 2.47503 2.87636 3.25716 3.53468 3.66418 3.75919 3.82904 4.07640 4.09927 4.28149 4.29112 4.53138 4.53858 4.65736 4.67551 4.74559 4.80703 4.87657 4.88591 5.00392 5.05813 5.22997 5.26451 5.52140 5.69133 5.82212 6.18322 6.24064 6.54356 7.02649 7.04589 7.78359 8.00355 9.16276 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.032477 B = 0.002839 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.937088 B = 9860.416220 C =10391.129102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.199 3.801 3 N -0.483 5.483 4 C -0.103 4.103 5 C 0.594 3.406 6 O -0.564 6.564 7 N -0.696 5.696 8 C 0.138 3.862 9 C -0.157 4.157 10 C -0.135 4.135 11 C 0.162 3.838 12 N -0.753 5.753 13 C -0.243 4.243 14 H 0.052 0.948 15 C -0.065 4.065 16 N -0.984 5.984 17 Si 0.963 3.037 18 H -0.274 1.274 19 H -0.294 1.294 20 H -0.249 1.249 21 C 0.041 3.959 22 C -0.067 4.067 23 O -0.197 6.197 24 H 0.111 0.889 25 H 0.112 0.888 26 H 0.114 0.886 27 H 0.417 0.583 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.152 0.848 31 H 0.137 0.863 32 H 0.029 0.971 33 H 0.035 0.965 34 H 0.369 0.631 35 H 0.260 0.740 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.128 -15.602 -11.241 33.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.010 4.010 3 N -0.214 5.214 4 C -0.221 4.221 5 C 0.380 3.620 6 O -0.444 6.444 7 N -0.347 5.347 8 C 0.015 3.985 9 C -0.176 4.176 10 C -0.154 4.154 11 C 0.037 3.963 12 N -0.399 5.399 13 C -0.374 4.374 14 H 0.070 0.930 15 C -0.257 4.257 16 N -0.634 5.634 17 Si 0.789 3.211 18 H -0.200 1.200 19 H -0.221 1.221 20 H -0.174 1.174 21 C -0.016 4.016 22 C -0.123 4.123 23 O -0.085 6.085 24 H 0.130 0.870 25 H 0.130 0.870 26 H 0.132 0.868 27 H 0.254 0.746 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.169 0.831 31 H 0.154 0.846 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.203 0.797 35 H 0.068 0.932 36 H 0.125 0.875 37 H 0.116 0.884 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -26.436 -15.428 -11.084 32.554 hybrid contribution 0.586 0.503 -0.138 0.785 sum -25.850 -14.925 -11.222 31.889 Atomic orbital electron populations 1.20631 0.77200 1.06814 1.06598 1.27308 0.98062 0.77421 0.98241 1.70677 1.00306 1.31126 1.19266 1.21369 0.92218 0.92824 1.15723 1.16991 0.86399 0.82327 0.76236 1.90814 1.25510 1.75867 1.52203 1.45650 1.10965 1.04698 1.73359 1.20518 0.87421 0.87960 1.02565 1.22807 1.02898 0.92978 0.98958 1.23076 0.95961 1.01187 0.95156 1.20057 0.86802 0.92453 0.97022 1.42591 1.17545 1.27755 1.51997 1.19038 0.94567 1.06625 1.17153 0.92968 1.25613 0.95787 1.02582 1.01696 1.69901 1.08732 1.39184 1.45565 0.85298 0.77061 0.79260 0.79499 1.19967 1.22089 1.17356 1.24099 0.84797 0.94396 0.98322 1.20543 0.88495 0.98068 1.05224 1.84374 1.15989 1.38270 1.69838 0.87027 0.86960 0.86751 0.74580 0.91521 0.91041 0.83074 0.84574 0.95334 0.94691 0.79722 0.93163 0.87509 0.88416 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.28 10.51 71.24 0.75 0.47 16 2 C 0.20 3.26 8.30 88.39 0.73 4.00 16 3 N -0.48 -10.70 11.06 -293.03 -3.24 -13.94 16 4 C -0.10 -2.62 6.99 40.41 0.28 -2.34 16 5 C 0.59 17.53 7.81 86.66 0.68 18.21 16 6 O -0.56 -19.77 15.61 -4.10 -0.06 -19.83 16 7 N -0.70 -18.03 5.54 -470.10 -2.61 -20.63 16 8 C 0.14 3.90 5.76 85.63 0.49 4.39 16 9 C -0.16 -3.79 9.63 25.65 0.25 -3.54 16 10 C -0.13 -3.88 9.63 25.65 0.25 -3.63 16 11 C 0.16 6.45 6.35 85.63 0.54 6.99 16 12 N -0.75 -36.62 5.40 -347.16 -1.87 -38.49 16 13 C -0.24 -14.51 10.47 84.03 0.88 -13.63 16 14 H 0.05 3.43 8.06 -2.91 -0.02 3.41 16 15 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 16 N -0.98 -64.70 13.97 21.65 0.30 -64.40 16 17 Si 0.96 46.13 27.74 68.60 1.90 48.03 16 18 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 19 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 20 H -0.25 -10.71 6.52 99.48 0.65 -10.06 16 21 C 0.04 0.88 7.44 25.19 0.19 1.07 16 22 C -0.07 -1.12 9.13 71.24 0.65 -0.47 16 23 O -0.20 -3.63 10.73 0.37 0.00 -3.62 16 24 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 25 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 26 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 27 H 0.42 9.06 8.19 -92.71 -0.76 8.30 16 28 H 0.07 2.26 5.30 -2.38 -0.01 2.25 16 29 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 31 H 0.14 3.38 8.06 -2.91 -0.02 3.35 16 32 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.04 1.47 5.30 -2.38 -0.01 1.46 16 34 H 0.37 16.74 5.52 -92.71 -0.51 16.23 16 35 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 36 H 0.11 1.12 8.14 -2.39 -0.02 1.11 16 37 H 0.10 1.70 8.08 -2.39 -0.02 1.68 16 38 H 0.09 1.74 8.07 -2.39 -0.02 1.72 16 Total: -1.00 -79.33 330.08 0.35 -78.98 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: -0.23 Total: 25.89 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: 6.16 Total: 8.02 kcal Atomic # 7 Polarization: -130.05 SS G_CDS: -7.42 Total: -137.47 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.06 Total: -23.45 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.90 Total: 48.03 kcal Total: -79.33 0.35 -78.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321306281.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.790 kcal (2) G-P(sol) polarization free energy of solvation -79.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds