Wall clock time and date at job start Tue Mar 31 2020 02:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39672 * 127.32307 * 2 1 4 4 N 1.30866 * 107.86035 * 179.97438 * 3 2 1 5 5 N 1.28441 * 110.92860 * 359.71513 * 4 3 2 6 6 C 1.46497 * 125.18809 * 180.27977 * 5 4 3 7 7 C 1.36600 * 109.61633 * 0.46536 * 5 4 3 8 8 C 1.47166 * 126.87961 * 179.81506 * 7 5 4 9 9 O 1.21634 * 120.00100 * 90.27532 * 8 7 5 10 10 N 1.34773 * 120.00128 * 270.54809 * 8 7 5 11 11 C 1.47028 * 125.64688 * 4.75512 * 10 8 7 12 12 C 1.54321 * 107.26919 * 181.02219 * 11 10 8 13 13 C 1.55155 * 102.94476 * 22.19479 * 12 11 10 14 14 O 1.42904 * 111.00053 * 82.56831 * 13 12 11 15 15 C 1.50698 * 111.00567 * 206.38167 * 13 12 11 16 16 H 1.08001 * 119.99980 * 118.54710 * 15 13 12 17 17 C 1.37881 * 119.99931 * 298.55056 * 15 13 12 18 18 N 1.31510 * 119.99904 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 119.99808 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47298 * 59.99452 * 19 17 15 21 21 H 1.48495 * 109.47376 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.47082 * 299.99745 * 19 17 15 23 23 C 1.47424 * 125.65043 * 184.44746 * 10 8 7 24 24 H 1.09011 * 109.47017 * 270.02182 * 1 2 3 25 25 H 1.09001 * 109.47297 * 30.01788 * 1 2 3 26 26 H 1.08999 * 109.47375 * 150.02346 * 1 2 3 27 27 H 1.07998 * 126.06772 * 0.02562 * 3 2 1 28 28 H 1.09000 * 109.47282 * 275.16195 * 6 5 4 29 29 H 1.08992 * 109.47395 * 35.16616 * 6 5 4 30 30 H 1.09004 * 109.47202 * 155.16505 * 6 5 4 31 31 H 1.09003 * 109.88339 * 300.44466 * 11 10 8 32 32 H 1.09008 * 109.87989 * 61.60947 * 11 10 8 33 33 H 1.09001 * 110.71761 * 140.55820 * 12 11 10 34 34 H 1.09000 * 110.72078 * 263.64952 * 12 11 10 35 35 H 0.96703 * 114.00017 * 61.45599 * 14 13 12 36 36 H 0.97004 * 119.99337 * 180.02562 * 18 17 15 37 37 H 1.08994 * 110.37112 * 274.74628 * 23 10 8 38 38 H 1.08994 * 110.36407 * 37.07473 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3538 1.1107 0.0000 4 7 3.5877 0.6747 0.0006 5 7 3.6206 -0.6093 0.0069 6 6 4.8390 -1.4226 0.0152 7 6 2.3460 -1.1007 0.0005 8 6 1.9454 -2.5168 0.0007 9 8 1.7690 -3.0988 1.0541 10 7 1.7793 -3.1703 -1.1662 11 6 2.0585 -2.6231 -2.5020 12 6 1.6967 -3.7161 -3.5296 13 6 0.7016 -4.6132 -2.7470 14 8 -0.6183 -4.0665 -2.7835 15 6 0.7138 -6.0237 -3.2774 16 1 1.0042 -6.8403 -2.6330 17 6 0.3543 -6.2716 -4.5852 18 7 0.0002 -5.2772 -5.3696 19 14 0.3687 -8.0202 -5.2423 20 1 -0.5679 -8.8552 -4.4481 21 1 -0.0558 -8.0178 -6.6652 22 1 1.7410 -8.5777 -5.1356 23 6 1.2936 -4.5543 -1.3143 24 1 -0.3634 0.0004 1.0278 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3634 -0.8902 -0.5135 27 1 2.0451 2.1456 0.0004 28 1 5.1962 -1.5523 -1.0064 29 1 5.6055 -0.9227 0.6073 30 1 4.6219 -2.3979 0.4508 31 1 1.4490 -1.7360 -2.6741 32 1 3.1158 -2.3710 -2.5857 33 1 1.2158 -3.2788 -4.4045 34 1 2.5827 -4.2807 -3.8202 35 1 -0.9893 -3.9935 -3.6735 36 1 -0.2531 -5.4518 -6.2895 37 1 2.1190 -5.2589 -1.2133 38 1 0.5204 -4.7660 -0.5759 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326347563.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:47 Heat of formation + Delta-G solvation = -23.586256 kcal Electronic energy + Delta-G solvation = -22571.221552 eV Core-core repulsion = 19221.728612 eV Total energy + Delta-G solvation = -3349.492940 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.54275 -40.94821 -38.98015 -36.15464 -34.98018 -34.21286 -33.05062 -31.52163 -30.19043 -29.31373 -27.25521 -26.94435 -24.64212 -22.83261 -21.91043 -21.56213 -20.19609 -19.18490 -18.67925 -17.62956 -17.11016 -16.87887 -16.72722 -16.27101 -16.03151 -15.37386 -15.01474 -14.68780 -14.33840 -14.29632 -14.03901 -13.84401 -13.61448 -13.51987 -13.38706 -13.24630 -13.09232 -13.05797 -12.65171 -12.52139 -12.27683 -11.90427 -11.70156 -11.41956 -11.25733 -10.64026 -10.21944 -10.14590 -9.78712 -9.69126 -8.23454 -6.38442 0.58493 0.97691 1.44972 1.47396 1.53039 1.58474 1.67820 2.03798 2.40874 3.01029 3.26818 3.51547 3.73981 3.92184 4.10144 4.16650 4.20885 4.23648 4.27236 4.43273 4.47548 4.53898 4.58647 4.63143 4.79737 4.80992 5.04789 5.09338 5.13327 5.15070 5.41070 5.50225 5.55946 5.75008 5.76485 6.06198 6.33497 6.65036 6.80820 7.01979 7.31328 7.39662 8.82303 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.029646 B = 0.004782 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.249482 B = 5853.394898 C = 6018.474502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.167 4.167 3 C 0.009 3.991 4 N -0.295 5.295 5 N -0.276 5.276 6 C 0.079 3.921 7 C -0.044 4.044 8 C 0.604 3.396 9 O -0.573 6.573 10 N -0.590 5.590 11 C 0.112 3.888 12 C -0.123 4.123 13 C 0.237 3.763 14 O -0.591 6.591 15 C -0.562 4.562 16 H 0.058 0.942 17 C 0.040 3.960 18 N -0.906 5.906 19 Si 0.958 3.042 20 H -0.279 1.279 21 H -0.281 1.281 22 H -0.270 1.270 23 C 0.125 3.875 24 H 0.073 0.927 25 H 0.100 0.900 26 H 0.041 0.959 27 H 0.221 0.779 28 H 0.103 0.897 29 H 0.120 0.880 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.379 0.621 36 H 0.271 0.729 37 H 0.083 0.917 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.634 10.217 4.118 12.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.178 4.178 3 C -0.168 4.168 4 N -0.125 5.125 5 N -0.064 5.064 6 C -0.060 4.060 7 C -0.172 4.172 8 C 0.390 3.610 9 O -0.453 6.453 10 N -0.321 5.321 11 C -0.010 4.010 12 C -0.162 4.162 13 C 0.197 3.803 14 O -0.400 6.400 15 C -0.600 4.600 16 H 0.076 0.924 17 C -0.162 4.162 18 N -0.545 5.545 19 Si 0.784 3.216 20 H -0.204 1.204 21 H -0.206 1.206 22 H -0.195 1.195 23 C 0.003 3.997 24 H 0.092 0.908 25 H 0.119 0.881 26 H 0.060 0.940 27 H 0.237 0.763 28 H 0.121 0.879 29 H 0.138 0.862 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.228 0.772 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.876 10.263 5.190 13.940 hybrid contribution -1.043 -1.474 -1.036 2.082 sum 6.834 8.789 4.154 11.883 Atomic orbital electron populations 1.20161 0.87568 1.03071 1.02604 1.21023 0.97741 0.90793 1.08214 1.23950 0.86858 1.00907 1.05114 1.73085 1.25087 0.93138 1.21233 1.45756 1.05558 1.03863 1.51237 1.22440 0.83210 0.94316 1.06073 1.21175 0.87507 0.93656 1.14868 1.16880 0.77548 0.84164 0.82401 1.90781 1.54088 1.68525 1.31860 1.48574 1.62412 1.14920 1.06188 1.22142 1.00309 0.97560 0.80989 1.22967 1.00184 0.95785 0.97223 1.19778 0.80370 0.91217 0.88900 1.86127 1.32888 1.86314 1.34654 1.21613 1.47894 0.93340 0.97134 0.92416 1.25567 0.93232 1.00879 0.96534 1.69769 1.44698 1.32313 1.07673 0.85612 0.78628 0.80212 0.77155 1.20427 1.20620 1.19547 1.22349 0.97728 0.81509 0.98128 0.90807 0.88135 0.94034 0.76294 0.87871 0.86168 0.89646 0.91750 0.90564 0.90508 0.91471 0.77187 0.91942 0.89870 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.97 10.28 71.23 0.73 -1.24 16 2 C -0.17 -4.85 6.30 -19.48 -0.12 -4.97 16 3 C 0.01 0.21 12.00 85.18 1.02 1.23 16 4 N -0.29 -8.01 11.90 -57.14 -0.68 -8.69 16 5 N -0.28 -7.74 3.75 -356.03 -1.33 -9.08 16 6 C 0.08 1.60 11.22 127.77 1.43 3.03 16 7 C -0.04 -1.44 5.90 40.79 0.24 -1.20 16 8 C 0.60 23.43 6.80 86.59 0.59 24.02 16 9 O -0.57 -25.91 17.40 -4.14 -0.07 -25.99 16 10 N -0.59 -22.87 3.32 -815.51 -2.71 -25.58 16 11 C 0.11 3.94 6.47 86.73 0.56 4.50 16 12 C -0.12 -5.04 5.37 31.78 0.17 -4.87 16 13 C 0.24 11.08 0.87 -10.07 -0.01 11.07 16 14 O -0.59 -29.37 13.17 -148.98 -1.96 -31.33 16 15 C -0.56 -28.33 8.27 25.60 0.21 -28.12 16 16 H 0.06 2.91 7.79 -2.91 -0.02 2.89 16 17 C 0.04 1.96 5.29 84.66 0.45 2.40 16 18 N -0.91 -44.85 10.76 21.45 0.23 -44.62 16 19 Si 0.96 39.84 29.54 68.60 2.03 41.86 16 20 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.28 -11.40 7.11 99.48 0.71 -10.70 16 22 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 23 C 0.12 5.43 6.08 86.93 0.53 5.96 16 24 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 25 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.04 1.29 8.07 -2.39 -0.02 1.27 16 27 H 0.22 3.46 8.06 -2.91 -0.02 3.44 16 28 H 0.10 1.71 8.14 -2.39 -0.02 1.70 16 29 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.08 1.86 7.65 -2.39 -0.02 1.84 16 31 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 33 H 0.08 3.33 7.55 -2.39 -0.02 3.31 16 34 H 0.07 2.75 8.04 -2.39 -0.02 2.73 16 35 H 0.38 18.79 7.56 -74.06 -0.56 18.23 16 36 H 0.27 12.87 8.31 -92.71 -0.77 12.10 16 37 H 0.08 3.45 8.04 -2.39 -0.02 3.43 16 38 H 0.05 2.52 8.08 -2.39 -0.02 2.50 16 Total: -1.00 -61.97 324.00 1.82 -60.16 By element: Atomic # 1 Polarization: 30.94 SS G_CDS: 0.51 Total: 31.45 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: 5.80 Total: 11.81 kcal Atomic # 7 Polarization: -83.47 SS G_CDS: -4.50 Total: -87.97 kcal Atomic # 8 Polarization: -55.28 SS G_CDS: -2.03 Total: -57.31 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.86 kcal Total: -61.97 1.82 -60.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326347563.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.571 kcal (2) G-P(sol) polarization free energy of solvation -61.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds