Wall clock time and date at job start Tue Mar 31 2020 02:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30499 * 125.65089 * 2 1 4 4 C 1.34123 * 109.25795 * 180.28912 * 3 2 1 5 5 C 1.34668 * 108.01978 * 359.71743 * 4 3 2 6 6 N 1.35044 * 125.65281 * 179.80966 * 2 1 3 7 7 C 1.46497 * 126.39465 * 359.97438 * 6 2 1 8 8 C 1.50699 * 109.47618 * 84.70447 * 7 6 2 9 9 O 1.21287 * 119.99744 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00274 * 179.97438 * 8 7 6 11 11 C 1.47421 * 125.64539 * 0.02821 * 10 8 7 12 12 C 1.54917 * 104.82929 * 155.83778 * 11 10 8 13 13 C 1.55148 * 101.58107 * 37.00863 * 12 11 10 14 14 O 1.42894 * 110.72342 * 83.04256 * 13 12 11 15 15 C 1.50704 * 110.71734 * 206.13399 * 13 12 11 16 16 H 1.08004 * 119.99892 * 121.59863 * 15 13 12 17 17 C 1.37876 * 120.00088 * 301.32751 * 15 13 12 18 18 N 1.31515 * 120.00123 * 354.04885 * 17 15 13 19 19 Si 1.86808 * 119.99858 * 174.05026 * 17 15 13 20 20 H 1.48498 * 109.46940 * 94.98566 * 19 17 15 21 21 H 1.48494 * 109.46842 * 214.98418 * 19 17 15 22 22 H 1.48496 * 109.47234 * 334.98543 * 19 17 15 23 23 C 1.47022 * 125.65068 * 179.97438 * 10 8 7 24 24 H 1.08994 * 109.47379 * 270.18198 * 1 2 3 25 25 H 1.08998 * 109.47090 * 30.18702 * 1 2 3 26 26 H 1.09006 * 109.46643 * 150.17939 * 1 2 3 27 27 H 1.08001 * 125.99197 * 179.72513 * 4 3 2 28 28 H 1.08005 * 126.59122 * 180.02562 * 5 4 3 29 29 H 1.09006 * 109.46894 * 324.70583 * 7 6 2 30 30 H 1.09008 * 109.47070 * 204.70834 * 7 6 2 31 31 H 1.08996 * 110.37151 * 36.99492 * 11 10 8 32 32 H 1.09011 * 110.36840 * 274.67053 * 11 10 8 33 33 H 1.08999 * 110.99902 * 278.93011 * 12 11 10 34 34 H 1.08999 * 111.00141 * 155.08736 * 12 11 10 35 35 H 0.96703 * 114.00533 * 58.29098 * 14 13 12 36 36 H 0.96997 * 119.99852 * 180.02562 * 18 17 15 37 37 H 1.09006 * 109.88107 * 61.67447 * 23 10 8 38 38 H 1.09000 * 109.88040 * 300.51653 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6819 -0.0064 5 6 3.5926 -0.6642 -0.0042 6 7 2.2941 -1.0973 0.0036 7 6 1.8426 -2.4910 0.0088 8 6 1.5625 -2.9336 -1.4042 9 8 1.7246 -2.1611 -2.3251 10 7 1.1328 -4.1882 -1.6448 11 6 0.8950 -5.2253 -0.6244 12 6 -0.1276 -6.1919 -1.2724 13 6 0.3444 -6.1997 -2.7503 14 8 1.4195 -7.1232 -2.9330 15 6 -0.8004 -6.5279 -3.6739 16 1 -1.0844 -5.8326 -4.4500 17 6 -1.4815 -7.7182 -3.5316 18 7 -1.0606 -8.6177 -2.6694 19 14 -3.0021 -8.0533 -4.5636 20 1 -2.6193 -8.8256 -5.7728 21 1 -3.9794 -8.8360 -3.7652 22 1 -3.6163 -6.7648 -4.9730 23 6 0.8226 -4.7488 -2.9681 24 1 -0.3634 0.0033 1.0276 25 1 -0.3633 0.8883 -0.5167 26 1 -0.3633 -0.8917 -0.5111 27 1 4.4098 1.3411 -0.0122 28 1 4.4777 -1.2832 -0.0076 29 1 0.9328 -2.5759 0.6032 30 1 2.6190 -3.1228 0.4404 31 1 0.4771 -4.7804 0.2786 32 1 1.8218 -5.7516 -0.3952 33 1 -1.1418 -5.8015 -1.1881 34 1 -0.0562 -7.1874 -0.8341 35 1 1.2025 -8.0331 -2.6877 36 1 -1.5396 -9.4552 -2.5696 37 1 1.7164 -4.7427 -3.5920 38 1 0.0333 -4.1653 -3.4420 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326348136.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:08 Heat of formation + Delta-G solvation = -37.920502 kcal Electronic energy + Delta-G solvation = -22055.382754 eV Core-core repulsion = 18705.268234 eV Total energy + Delta-G solvation = -3350.114520 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.10971 -41.04379 -39.04669 -36.14370 -35.00496 -34.23358 -32.64133 -31.67867 -30.27665 -28.95996 -27.70038 -26.64146 -24.04607 -22.39917 -21.85920 -21.10654 -20.16911 -19.18126 -18.44799 -18.09403 -17.05498 -16.88308 -16.62012 -16.21159 -15.83286 -15.45545 -15.08849 -14.85020 -14.65147 -14.10201 -13.93259 -13.86953 -13.55254 -13.39589 -13.24936 -13.21339 -13.20697 -13.14485 -12.68606 -12.45827 -12.26290 -11.98728 -11.46919 -11.27695 -11.00233 -10.63923 -10.48829 -10.16325 -9.72589 -9.26985 -8.26754 -6.39366 0.94591 1.39689 1.40286 1.44685 1.52780 1.65265 2.10197 2.18630 2.39209 2.99642 3.33656 3.59599 3.70239 3.80924 3.88780 3.95764 4.06425 4.25366 4.41063 4.42913 4.54892 4.56353 4.65673 4.67999 4.83381 4.87547 4.99319 5.14737 5.16737 5.31322 5.46138 5.53793 5.75639 5.83651 6.08553 6.16797 6.47791 6.63556 6.95667 7.13033 7.29951 7.42132 8.79509 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.034535 B = 0.003986 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.568710 B = 7022.915865 C = 7303.357508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.202 3.798 3 N -0.532 5.532 4 C -0.053 4.053 5 C -0.052 4.052 6 N -0.446 5.446 7 C 0.098 3.902 8 C 0.502 3.498 9 O -0.584 6.584 10 N -0.604 5.604 11 C 0.098 3.902 12 C -0.127 4.127 13 C 0.234 3.766 14 O -0.594 6.594 15 C -0.566 4.566 16 H 0.047 0.953 17 C 0.043 3.957 18 N -0.901 5.901 19 Si 0.953 3.047 20 H -0.281 1.281 21 H -0.274 1.274 22 H -0.276 1.276 23 C 0.131 3.869 24 H 0.107 0.893 25 H 0.086 0.914 26 H 0.069 0.931 27 H 0.187 0.813 28 H 0.201 0.799 29 H 0.155 0.845 30 H 0.158 0.842 31 H 0.113 0.887 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.380 0.620 36 H 0.272 0.728 37 H 0.039 0.961 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.511 6.708 11.801 14.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.061 4.061 3 N -0.252 5.252 4 C -0.199 4.199 5 C -0.184 4.184 6 N -0.129 5.129 7 C -0.028 4.028 8 C 0.291 3.709 9 O -0.464 6.464 10 N -0.337 5.337 11 C -0.023 4.023 12 C -0.166 4.166 13 C 0.194 3.806 14 O -0.403 6.403 15 C -0.604 4.604 16 H 0.065 0.935 17 C -0.159 4.159 18 N -0.539 5.539 19 Si 0.779 3.221 20 H -0.207 1.207 21 H -0.199 1.199 22 H -0.201 1.201 23 C 0.008 3.992 24 H 0.126 0.874 25 H 0.105 0.895 26 H 0.088 0.912 27 H 0.204 0.796 28 H 0.218 0.782 29 H 0.172 0.828 30 H 0.176 0.824 31 H 0.131 0.869 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.230 0.770 36 H 0.082 0.918 37 H 0.058 0.942 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.581 8.216 11.230 14.368 hybrid contribution -0.627 -1.735 -1.073 2.135 sum 2.954 6.481 10.156 12.405 Atomic orbital electron populations 1.20278 0.83538 1.04011 1.04778 1.23772 0.96816 0.81386 1.04086 1.70188 1.03488 1.29408 1.22099 1.22669 0.94823 0.93799 1.08606 1.23165 0.87526 0.97097 1.10636 1.45054 1.06926 1.06562 1.54325 1.21895 1.06859 0.80815 0.93222 1.21093 0.77120 0.80278 0.92430 1.90749 1.54455 1.53569 1.47626 1.48662 1.64091 1.11366 1.09538 1.22711 0.99924 0.88547 0.91125 1.23086 0.97506 0.99261 0.96729 1.19604 0.84000 0.84052 0.92902 1.86125 1.41208 1.22521 1.90421 1.21712 1.16211 1.04837 1.17666 0.93511 1.25488 0.99389 0.95172 0.95832 1.69726 1.40731 1.07691 1.35786 0.85629 0.79668 0.78016 0.78810 1.20710 1.19916 1.20062 1.21769 0.98418 0.94462 0.84588 0.87448 0.89489 0.91171 0.79580 0.78234 0.82751 0.82431 0.86872 0.90076 0.92119 0.89991 0.76978 0.91849 0.94220 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.45 10.04 71.24 0.72 -0.73 16 2 C 0.20 5.67 7.88 138.13 1.09 6.76 16 3 N -0.53 -16.79 11.25 -188.13 -2.12 -18.91 16 4 C -0.05 -1.42 11.87 83.52 0.99 -0.42 16 5 C -0.05 -1.26 11.58 83.09 0.96 -0.29 16 6 N -0.45 -11.21 2.24 -518.33 -1.16 -12.37 16 7 C 0.10 1.93 5.16 85.63 0.44 2.38 16 8 C 0.50 15.86 7.92 87.66 0.69 16.56 16 9 O -0.58 -24.42 16.74 -3.05 -0.05 -24.47 16 10 N -0.60 -20.16 3.33 -811.78 -2.70 -22.86 16 11 C 0.10 2.66 6.68 86.86 0.58 3.24 16 12 C -0.13 -4.74 5.43 31.99 0.17 -4.57 16 13 C 0.23 10.61 0.84 -10.36 -0.01 10.60 16 14 O -0.59 -28.23 13.08 -148.98 -1.95 -30.18 16 15 C -0.57 -28.84 8.20 25.60 0.21 -28.63 16 16 H 0.05 2.47 7.61 -2.91 -0.02 2.45 16 17 C 0.04 2.13 5.25 84.65 0.44 2.57 16 18 N -0.90 -43.50 10.75 21.45 0.23 -43.27 16 19 Si 0.95 39.91 29.54 68.60 2.03 41.94 16 20 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 21 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 22 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 23 C 0.13 5.61 6.22 86.73 0.54 6.15 16 24 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.07 1.52 7.84 -2.38 -0.02 1.50 16 27 H 0.19 3.90 8.06 -2.91 -0.02 3.88 16 28 H 0.20 3.38 8.06 -2.91 -0.02 3.36 16 29 H 0.15 2.02 7.65 -2.38 -0.02 2.00 16 30 H 0.16 2.02 8.14 -2.38 -0.02 2.00 16 31 H 0.11 1.99 7.48 -2.39 -0.02 1.97 16 32 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 33 H 0.06 2.34 8.04 -2.39 -0.02 2.32 16 34 H 0.08 3.19 7.56 -2.39 -0.02 3.17 16 35 H 0.38 17.98 7.53 -74.06 -0.56 17.43 16 36 H 0.27 12.52 8.31 -92.71 -0.77 11.75 16 37 H 0.04 1.84 8.07 -2.38 -0.02 1.82 16 38 H 0.06 2.60 7.68 -2.39 -0.02 2.59 16 Total: -1.00 -68.79 321.78 1.63 -67.17 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: 0.52 Total: 29.35 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 6.83 Total: 13.61 kcal Atomic # 7 Polarization: -91.66 SS G_CDS: -5.75 Total: -97.41 kcal Atomic # 8 Polarization: -52.65 SS G_CDS: -2.00 Total: -54.65 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.94 kcal Total: -68.79 1.63 -67.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326348136.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.246 kcal (2) G-P(sol) polarization free energy of solvation -68.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds