Wall clock time and date at job start Tue Mar 31 2020 01:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38036 * 126.29067 * 2 1 4 4 C 1.47426 * 126.41630 * 0.02562 * 3 2 1 5 5 O 1.21598 * 120.00311 * 359.71280 * 4 3 2 6 6 N 1.34780 * 120.00251 * 179.71792 * 4 3 2 7 7 C 1.47026 * 125.64391 * 359.97438 * 6 4 3 8 8 C 1.54330 * 107.26840 * 178.97562 * 7 6 4 9 9 C 1.55155 * 102.94292 * 337.81024 * 8 7 6 10 10 O 1.42907 * 111.00242 * 277.42480 * 9 8 7 11 11 C 1.50695 * 111.03665 * 153.58963 * 9 8 7 12 12 H 1.07999 * 120.00448 * 6.33399 * 11 9 8 13 13 C 1.37879 * 119.99755 * 186.32756 * 11 9 8 14 14 N 1.31518 * 120.00166 * 0.02562 * 13 11 9 15 15 Si 1.86807 * 119.99927 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47051 * 60.00161 * 15 13 11 17 17 H 1.48502 * 109.47072 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47104 * 299.99951 * 15 13 11 19 19 C 1.47420 * 125.65180 * 180.02562 * 6 4 3 20 20 C 1.41300 * 107.16880 * 179.75970 * 3 2 1 21 21 N 1.30442 * 108.02117 * 0.23646 * 20 3 2 22 22 N 1.34260 * 126.29156 * 180.17389 * 2 1 3 23 23 C 1.46508 * 125.75207 * 0.02953 * 22 2 1 24 24 H 1.08995 * 109.47463 * 90.00360 * 1 2 3 25 25 H 1.09001 * 109.47197 * 210.00625 * 1 2 3 26 26 H 1.08999 * 109.47284 * 329.99889 * 1 2 3 27 27 H 1.08998 * 109.88351 * 298.39161 * 7 6 4 28 28 H 1.08998 * 109.88379 * 59.55951 * 7 6 4 29 29 H 1.08998 * 110.71700 * 96.16950 * 8 7 6 30 30 H 1.08991 * 110.72004 * 219.44241 * 8 7 6 31 31 H 0.96693 * 113.99773 * 173.65155 * 10 9 8 32 32 H 0.97002 * 119.99812 * 179.97438 * 14 13 11 33 33 H 1.08997 * 110.36858 * 322.93289 * 19 6 4 34 34 H 1.08999 * 110.36307 * 85.25503 * 19 6 4 35 35 H 1.07995 * 125.98677 * 180.23661 * 20 3 2 36 36 H 1.09003 * 109.47099 * 270.27292 * 23 22 2 37 37 H 1.09002 * 109.47239 * 30.27463 * 23 22 2 38 38 H 1.08999 * 109.46762 * 150.27491 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1126 0.0000 4 6 1.8858 2.5202 0.0005 5 8 0.6996 2.7878 -0.0042 6 7 2.7999 3.5107 0.0062 7 6 4.2590 3.3299 0.0128 8 6 4.8948 4.7360 -0.0086 9 6 3.7637 5.6200 -0.5970 10 8 3.7468 5.5475 -2.0241 11 6 3.8962 7.0477 -0.1332 12 1 4.7603 7.3517 0.4389 13 6 2.9143 7.9659 -0.4393 14 7 1.8617 7.5957 -1.1356 15 14 3.0782 9.7355 0.1363 16 1 4.3144 10.3289 -0.4336 17 1 1.8990 10.5152 -0.3186 18 1 3.1510 9.7690 1.6191 19 6 2.5023 4.9545 0.0079 20 6 3.6590 0.6497 0.0057 21 7 3.6340 -0.6544 0.0037 22 7 2.3017 -1.0822 -0.0033 23 6 1.8500 -2.4759 -0.0081 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 4.5627 2.7994 0.9151 28 1 4.5671 2.7702 -0.8703 29 1 5.1510 5.0587 1.0005 30 1 5.7726 4.7524 -0.6544 31 1 2.9990 6.0048 -2.4323 32 1 1.1708 8.2417 -1.3506 33 1 1.6297 5.1628 -0.6110 34 1 2.3389 5.3069 1.0264 35 1 4.5448 1.2675 0.0107 36 1 1.7329 -2.8234 1.0183 37 1 0.8939 -2.5462 -0.5269 38 1 2.5872 -3.0949 -0.5195 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327171248.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:01 Heat of formation + Delta-G solvation = 0.199673 kcal Electronic energy + Delta-G solvation = -22276.851371 eV Core-core repulsion = 18928.389866 eV Total energy + Delta-G solvation = -3348.461505 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.35791 -38.97321 -36.97494 -34.38573 -33.48048 -32.19189 -31.83563 -30.12900 -28.30614 -27.18740 -26.74962 -24.89445 -23.21952 -21.19358 -20.50261 -19.50334 -18.49627 -17.16653 -16.80974 -15.87060 -15.71031 -15.19268 -14.83072 -14.64299 -14.32906 -14.00201 -13.39966 -13.20234 -13.02681 -12.92194 -12.82421 -12.65904 -12.47271 -12.13739 -11.90040 -11.54684 -11.29622 -10.99095 -10.78265 -10.69346 -10.55104 -10.45203 -10.15921 -9.37064 -9.33010 -9.20686 -8.65452 -8.49559 -8.30598 -7.66529 -6.23873 -4.33658 1.64663 2.36261 2.38621 3.24604 3.30418 3.32155 3.77787 3.95162 4.29444 4.44713 4.61479 4.90344 4.95637 5.02644 5.10640 5.17481 5.35172 5.44482 5.54282 5.56540 5.69081 5.84390 5.86577 6.04359 6.10787 6.28709 6.53862 6.55230 6.77416 6.88415 6.91995 7.11193 7.31060 7.41990 7.62646 7.77819 8.06640 8.35760 8.69542 8.91927 9.33954 9.42275 10.83062 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.036102 B = 0.004414 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.385363 B = 6341.876485 C = 6816.185460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.147 3.853 3 C -0.282 4.282 4 C 0.600 3.400 5 O -0.559 6.559 6 N -0.604 5.604 7 C 0.099 3.901 8 C -0.119 4.119 9 C 0.248 3.752 10 O -0.582 6.582 11 C -0.539 4.539 12 H 0.066 0.934 13 C 0.072 3.928 14 N -0.892 5.892 15 Si 0.903 3.097 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.275 1.275 19 C 0.099 3.901 20 C 0.072 3.928 21 N -0.307 5.307 22 N -0.370 5.370 23 C 0.099 3.901 24 H 0.084 0.916 25 H 0.066 0.934 26 H 0.108 0.892 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.381 0.619 32 H 0.270 0.730 33 H 0.087 0.913 34 H 0.059 0.941 35 H 0.200 0.800 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.100 -15.763 2.498 15.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.016 3.984 3 C -0.297 4.297 4 C 0.389 3.611 5 O -0.440 6.440 6 N -0.336 5.336 7 C -0.024 4.024 8 C -0.157 4.157 9 C 0.207 3.793 10 O -0.391 6.391 11 C -0.577 4.577 12 H 0.084 0.916 13 C -0.132 4.132 14 N -0.531 5.531 15 Si 0.730 3.270 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.200 1.200 19 C -0.023 4.023 20 C -0.115 4.115 21 N -0.126 5.126 22 N -0.151 5.151 23 C -0.042 4.042 24 H 0.103 0.897 25 H 0.085 0.915 26 H 0.126 0.874 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.230 0.770 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.078 0.922 35 H 0.217 0.783 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.268 -17.179 2.521 17.365 hybrid contribution -0.840 1.906 0.226 2.095 sum -0.572 -15.273 2.747 15.529 Atomic orbital electron populations 1.20651 0.86189 1.04603 1.04007 1.21477 0.94827 0.86256 0.95885 1.20158 0.92768 0.93950 1.22785 1.16790 0.84825 0.82886 0.76611 1.90686 1.16183 1.84056 1.53079 1.48473 1.05881 1.07939 1.71310 1.22274 0.81420 0.99182 0.99571 1.22653 0.99093 0.92661 1.01302 1.19626 0.88178 0.92191 0.79261 1.86107 1.53028 1.79040 1.20902 1.21429 1.06866 0.93589 1.35806 0.91604 1.25070 0.94586 0.99453 0.94041 1.69715 1.09555 1.35585 1.38216 0.86477 0.77668 0.83663 0.79169 1.20031 1.21125 1.20046 1.23226 1.02439 0.75396 1.01210 1.24791 0.98224 0.91762 0.96705 1.77144 0.95908 1.13547 1.26026 1.48324 1.04265 1.06100 1.56378 1.21883 1.01151 0.77732 1.03473 0.89719 0.91511 0.87366 0.92400 0.91845 0.90331 0.90669 0.76957 0.91986 0.89505 0.92226 0.78326 0.90602 0.89371 0.89043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.15 9.34 36.01 0.34 -0.81 16 2 C 0.15 2.18 7.01 -81.60 -0.57 1.60 16 3 C -0.28 -4.93 6.09 -105.07 -0.64 -5.57 16 4 C 0.60 12.56 7.85 -12.52 -0.10 12.46 16 5 O -0.56 -13.05 15.10 5.28 0.08 -12.97 16 6 N -0.60 -12.76 3.33 -171.78 -0.57 -13.33 16 7 C 0.10 1.75 4.98 -3.06 -0.02 1.73 16 8 C -0.12 -2.34 6.13 -24.89 -0.15 -2.49 16 9 C 0.25 5.98 0.87 -89.62 -0.08 5.90 16 10 O -0.58 -14.82 13.16 -35.23 -0.46 -15.28 16 11 C -0.54 -13.97 8.27 -34.44 -0.28 -14.25 16 12 H 0.07 1.67 7.79 -52.49 -0.41 1.26 16 13 C 0.07 1.87 5.29 -17.82 -0.09 1.78 16 14 N -0.89 -23.80 10.69 55.43 0.59 -23.21 16 15 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 16 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 17 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 C 0.10 2.38 5.38 -2.53 -0.01 2.37 16 20 C 0.07 1.12 10.45 -16.98 -0.18 0.95 16 21 N -0.31 -4.66 12.50 30.86 0.39 -4.27 16 22 N -0.37 -4.86 3.98 -63.34 -0.25 -5.12 16 23 C 0.10 0.75 11.06 59.85 0.66 1.42 16 24 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.07 0.56 7.71 -51.93 -0.40 0.16 16 26 H 0.11 1.56 6.51 -51.93 -0.34 1.22 16 27 H 0.06 0.86 7.00 -51.93 -0.36 0.50 16 28 H 0.06 1.05 6.83 -51.93 -0.35 0.70 16 29 H 0.08 1.45 8.03 -51.93 -0.42 1.03 16 30 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.38 9.96 7.56 45.56 0.34 10.30 16 32 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.09 2.35 7.33 -51.93 -0.38 1.97 16 34 H 0.06 1.49 8.03 -51.93 -0.42 1.07 16 35 H 0.20 2.73 4.47 -52.49 -0.23 2.49 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.09 0.47 7.64 -51.93 -0.40 0.08 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 312.09 15.07 4.70 4.70 Total: -1.00 -31.64 312.09 -5.87 -37.51 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -4.19 Total: 11.59 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -1.13 Total: 5.07 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: 0.15 Total: -45.93 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.38 Total: -28.25 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.64 -5.87 -37.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327171248.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.709 kcal (2) G-P(sol) polarization free energy of solvation -31.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds