Wall clock time and date at job start Tue Mar 31 2020 02:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31837 * 120.01431 * 2 1 4 4 N 1.28348 * 122.25839 * 180.02562 * 3 2 1 5 5 C 1.32374 * 122.09876 * 359.97438 * 4 3 2 6 6 O 1.35688 * 120.13763 * 179.72620 * 5 4 3 7 7 C 1.39231 * 119.72075 * 0.02562 * 5 4 3 8 8 C 1.50699 * 121.03620 * 179.97438 * 7 5 4 9 9 N 1.46503 * 109.47040 * 89.99769 * 8 7 5 10 10 C 1.34780 * 119.99641 * 180.02562 * 9 8 7 11 11 O 1.21281 * 119.99990 * 359.97438 * 10 9 8 12 12 C 1.50697 * 119.99730 * 179.97438 * 10 9 8 13 13 H 1.08998 * 109.47048 * 59.99978 * 12 10 9 14 14 C 1.52992 * 109.47269 * 299.99751 * 12 10 9 15 15 C 1.50699 * 109.47132 * 179.97438 * 12 10 9 16 16 H 1.08003 * 119.99879 * 0.02562 * 15 12 10 17 17 C 1.37876 * 120.00033 * 179.97438 * 15 12 10 18 18 N 1.31508 * 120.00334 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 119.99734 * 180.02562 * 17 15 12 20 20 H 1.48498 * 109.47594 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47210 * 120.00380 * 19 17 15 22 22 H 1.48506 * 109.47201 * 239.99950 * 19 17 15 23 23 C 1.38678 * 117.92346 * 359.97438 * 7 5 4 24 24 C 1.50696 * 120.98753 * 179.97438 * 23 7 5 25 25 H 1.09000 * 109.46680 * 90.00290 * 1 2 3 26 26 H 1.09000 * 109.47542 * 210.00123 * 1 2 3 27 27 H 1.08998 * 109.47209 * 330.00889 * 1 2 3 28 28 H 0.96706 * 113.99961 * 90.00648 * 6 5 4 29 29 H 1.09001 * 109.46932 * 209.99904 * 8 7 5 30 30 H 1.08998 * 109.47161 * 329.99827 * 8 7 5 31 31 H 0.96998 * 120.00237 * 359.97438 * 9 8 7 32 32 H 1.08998 * 109.47270 * 300.00091 * 14 12 10 33 33 H 1.09006 * 109.47379 * 59.99899 * 14 12 10 34 34 H 1.08999 * 109.47372 * 180.02562 * 14 12 10 35 35 H 0.96998 * 120.00426 * 179.97438 * 18 17 15 36 36 H 1.09001 * 109.47441 * 270.02333 * 24 23 7 37 37 H 1.09003 * 109.46876 * 30.03180 * 24 23 7 38 38 H 1.09002 * 109.46972 * 150.02561 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1665 1.1416 0.0000 4 7 3.4490 1.1918 -0.0005 5 6 4.1958 0.0988 -0.0005 6 8 5.5490 0.1983 -0.0066 7 6 3.5868 -1.1532 -0.0006 8 6 4.4082 -2.4167 -0.0012 9 7 4.6749 -2.8264 1.3799 10 6 5.3977 -3.9372 1.6256 11 8 5.8269 -4.5977 0.7034 12 6 5.6726 -4.3583 3.0461 13 1 4.7288 -4.5391 3.5606 14 6 6.4422 -3.2497 3.7669 15 6 6.4939 -5.6218 3.0455 16 1 6.7878 -6.0744 2.1100 17 6 6.8710 -6.1995 4.2393 18 7 6.5136 -5.6482 5.3785 19 14 7.8896 -7.7653 4.2384 20 1 8.1576 -8.1809 2.8382 21 1 9.1766 -7.5191 4.9372 22 1 7.1439 -8.8414 4.9394 23 6 2.2009 -1.2013 0.0000 24 6 1.4703 -2.5193 -0.0006 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5137 28 1 5.9451 0.2297 0.8750 29 1 3.8598 -3.2063 -0.5150 30 1 5.3521 -2.2361 -0.5154 31 1 4.3320 -2.2979 2.1174 32 1 7.3859 -3.0689 3.2524 33 1 5.8478 -2.3359 3.7674 34 1 6.6414 -3.5544 4.7943 35 1 6.7786 -6.0548 6.2183 36 1 1.2940 -2.8367 -1.0284 37 1 2.0725 -3.2688 0.5130 38 1 0.5157 -2.4058 0.5133 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327938513.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:24:19 Heat of formation + Delta-G solvation = -59.303201 kcal Electronic energy + Delta-G solvation = -21716.705664 eV Core-core repulsion = 18365.663921 eV Total energy + Delta-G solvation = -3351.041743 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.55046 -40.55881 -38.82857 -37.00229 -35.77290 -35.23505 -33.58394 -32.34234 -29.77518 -29.06989 -27.57967 -27.15466 -24.41290 -23.68283 -22.78603 -21.21243 -19.96759 -19.15145 -18.39170 -17.98344 -17.27257 -16.76254 -16.45809 -16.05965 -15.81490 -15.57944 -14.80740 -14.70639 -14.50594 -14.31286 -14.04477 -13.82223 -13.68681 -13.50037 -13.35856 -13.09898 -12.97349 -12.71778 -12.63335 -12.59780 -12.19802 -12.12190 -12.02596 -11.09320 -11.01548 -10.58085 -10.55926 -10.46590 -10.26825 -10.09266 -8.15078 -6.24999 -0.52119 -0.31775 1.39984 1.43053 1.55582 1.89525 2.05736 2.33259 2.43392 2.58191 3.05974 3.15252 3.17762 3.36386 3.60018 3.92683 4.10205 4.28210 4.41102 4.52283 4.59411 4.64893 4.75410 4.75802 4.84180 4.88139 4.93322 5.01759 5.05793 5.09258 5.39183 5.42680 5.49852 5.75247 5.93451 6.20936 6.35191 6.65826 6.85151 7.39279 7.49731 7.54264 8.90688 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.028539 B = 0.003945 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.862999 B = 7096.666712 C = 7367.549862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.059 3.941 3 N -0.240 5.240 4 N -0.294 5.294 5 C 0.267 3.733 6 O -0.481 6.481 7 C -0.128 4.128 8 C 0.172 3.828 9 N -0.719 5.719 10 C 0.528 3.472 11 O -0.580 6.580 12 C 0.025 3.975 13 H 0.044 0.956 14 C -0.120 4.120 15 C -0.527 4.527 16 H 0.049 0.951 17 C 0.021 3.979 18 N -0.911 5.911 19 Si 0.953 3.047 20 H -0.279 1.279 21 H -0.276 1.276 22 H -0.275 1.275 23 C -0.038 4.038 24 C -0.126 4.126 25 H 0.102 0.898 26 H 0.108 0.892 27 H 0.085 0.915 28 H 0.422 0.578 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.407 0.593 32 H 0.024 0.976 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.264 0.736 36 H 0.105 0.895 37 H 0.071 0.929 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.459 10.343 -7.445 18.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.087 4.087 3 N -0.084 5.084 4 N -0.144 5.144 5 C 0.081 3.919 6 O -0.289 6.289 7 C -0.140 4.140 8 C 0.049 3.951 9 N -0.373 5.373 10 C 0.317 3.683 11 O -0.459 6.459 12 C 0.004 3.996 13 H 0.062 0.938 14 C -0.178 4.178 15 C -0.565 4.565 16 H 0.068 0.932 17 C -0.178 4.178 18 N -0.550 5.550 19 Si 0.779 3.221 20 H -0.204 1.204 21 H -0.202 1.202 22 H -0.200 1.200 23 C -0.050 4.050 24 C -0.182 4.182 25 H 0.120 0.880 26 H 0.126 0.874 27 H 0.104 0.896 28 H 0.284 0.716 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.243 0.757 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.123 0.877 37 H 0.089 0.911 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.110 11.476 -8.515 19.393 hybrid contribution 1.109 -1.927 0.875 2.389 sum -12.001 9.549 -7.640 17.134 Atomic orbital electron populations 1.20920 0.84119 1.05639 1.05198 1.23430 1.01065 0.88741 0.95504 1.72838 0.99784 1.26004 1.09751 1.72867 1.00614 1.27783 1.13156 1.20821 0.86409 0.89284 0.95427 1.84718 1.12889 1.95393 1.35906 1.21178 0.95000 0.95220 1.02635 1.19884 0.98625 0.91752 0.84877 1.45954 1.56031 1.27628 1.07679 1.21515 0.75296 0.78775 0.92689 1.90537 1.52523 1.55002 1.47855 1.18810 0.97584 0.95664 0.87528 0.93779 1.21562 0.98169 0.95514 1.02582 1.21320 1.33611 1.08945 0.92663 0.93235 1.25553 0.96991 1.00170 0.95101 1.69943 1.46910 1.40664 0.97496 0.85585 0.78813 0.80005 0.77736 1.20403 1.20177 1.20031 1.21308 0.92094 0.98787 0.92787 1.21134 1.01430 0.90509 1.05145 0.88003 0.87396 0.89572 0.71644 0.89683 0.91022 0.75720 0.95661 0.93075 0.91215 0.92652 0.87684 0.91058 0.86959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.99 9.82 71.24 0.70 -0.29 16 2 C 0.06 1.11 6.86 42.68 0.29 1.41 16 3 N -0.24 -6.15 11.42 -47.60 -0.54 -6.69 16 4 N -0.29 -8.39 11.53 -170.22 -1.96 -10.35 16 5 C 0.27 6.93 7.83 84.85 0.66 7.59 16 6 O -0.48 -11.79 12.74 -90.07 -1.15 -12.94 16 7 C -0.13 -2.96 5.31 -19.52 -0.10 -3.07 16 8 C 0.17 4.61 4.92 85.63 0.42 5.03 16 9 N -0.72 -21.75 5.44 -466.78 -2.54 -24.29 16 10 C 0.53 22.35 7.15 87.66 0.63 22.97 16 11 O -0.58 -29.14 15.46 -3.03 -0.05 -29.18 16 12 C 0.03 1.20 2.64 -12.29 -0.03 1.17 16 13 H 0.04 2.15 8.14 -2.39 -0.02 2.14 16 14 C -0.12 -5.16 8.87 71.98 0.64 -4.53 16 15 C -0.53 -29.43 8.38 25.60 0.21 -29.21 16 16 H 0.05 2.98 6.75 -2.91 -0.02 2.96 16 17 C 0.02 1.14 5.30 84.66 0.45 1.59 16 18 N -0.91 -49.67 11.32 21.45 0.24 -49.43 16 19 Si 0.95 43.86 29.54 68.60 2.03 45.88 16 20 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 23 C -0.04 -0.71 5.92 -19.64 -0.12 -0.83 16 24 C -0.13 -1.62 8.94 71.23 0.64 -0.98 16 25 H 0.10 0.71 8.14 -2.39 -0.02 0.70 16 26 H 0.11 0.55 6.05 -2.39 -0.01 0.54 16 27 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.42 7.04 9.06 -74.05 -0.67 6.37 16 29 H 0.09 2.23 6.89 -2.39 -0.02 2.21 16 30 H 0.07 2.16 7.62 -2.39 -0.02 2.14 16 31 H 0.41 10.51 7.88 -92.71 -0.73 9.78 16 32 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.05 1.72 7.56 -2.38 -0.02 1.71 16 34 H 0.07 3.37 6.07 -2.39 -0.01 3.36 16 35 H 0.26 13.67 8.31 -92.71 -0.77 12.90 16 36 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.07 1.20 6.89 -2.39 -0.02 1.18 16 38 H 0.11 0.84 6.07 -2.39 -0.01 0.82 16 Total: -1.00 -72.03 320.58 0.14 -71.90 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -0.28 Total: 14.24 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: 4.39 Total: 0.86 kcal Atomic # 7 Polarization: -85.96 SS G_CDS: -4.80 Total: -90.76 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -1.19 Total: -42.12 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -72.03 0.14 -71.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327938513.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.593 kcal (2) G-P(sol) polarization free energy of solvation -72.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds