Wall clock time and date at job start Tue Mar 31 2020 02:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.31841 * 120.01311 * 2 1 4 4 N 1.28354 * 122.25860 * 180.02562 * 3 2 1 5 5 C 1.32366 * 122.09658 * 359.97438 * 4 3 2 6 6 O 1.35694 * 120.13723 * 180.02562 * 5 4 3 7 7 C 1.39224 * 119.72325 * 0.02562 * 5 4 3 8 8 C 1.50700 * 121.03854 * 180.02562 * 7 5 4 9 9 N 1.46496 * 109.46887 * 90.00202 * 8 7 5 10 10 C 1.34783 * 119.99983 * 179.97438 * 9 8 7 11 11 O 1.21274 * 119.99740 * 0.02562 * 10 9 8 12 12 C 1.50700 * 120.00008 * 179.97438 * 10 9 8 13 13 H 1.08997 * 109.47655 * 300.00593 * 12 10 9 14 14 C 1.53005 * 109.46714 * 60.00605 * 12 10 9 15 15 C 1.50701 * 109.47288 * 180.02562 * 12 10 9 16 16 H 1.08002 * 119.99347 * 354.48283 * 15 12 10 17 17 C 1.37871 * 120.00267 * 174.47686 * 15 12 10 18 18 N 1.31515 * 120.00275 * 164.60227 * 17 15 12 19 19 Si 1.86805 * 120.00132 * 344.88100 * 17 15 12 20 20 H 1.48495 * 109.47184 * 269.72477 * 19 17 15 21 21 H 1.48499 * 109.46925 * 29.72167 * 19 17 15 22 22 H 1.48493 * 109.47426 * 149.72060 * 19 17 15 23 23 C 1.38681 * 117.92287 * 0.27762 * 7 5 4 24 24 C 1.50697 * 120.98796 * 179.72627 * 23 7 5 25 25 H 1.08999 * 109.47504 * 89.99576 * 1 2 3 26 26 H 1.09001 * 109.47168 * 210.00542 * 1 2 3 27 27 H 1.09007 * 109.47112 * 330.00075 * 1 2 3 28 28 H 0.96704 * 113.99374 * 269.97556 * 6 5 4 29 29 H 1.09007 * 109.47084 * 330.00712 * 8 7 5 30 30 H 1.08994 * 109.47388 * 210.00315 * 8 7 5 31 31 H 0.96999 * 120.00481 * 0.02562 * 9 8 7 32 32 H 1.08992 * 109.47327 * 53.51941 * 14 12 10 33 33 H 1.09002 * 109.46728 * 173.52497 * 14 12 10 34 34 H 1.09008 * 109.46994 * 293.51357 * 14 12 10 35 35 H 0.97006 * 119.99247 * 355.18806 * 18 17 15 36 36 H 1.08995 * 109.47369 * 89.99675 * 24 23 7 37 37 H 1.08997 * 109.47140 * 210.00314 * 24 23 7 38 38 H 1.09000 * 109.47201 * 329.99715 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1664 1.1416 0.0000 4 7 3.4489 1.1919 -0.0005 5 6 4.1957 0.0990 -0.0005 6 8 5.5489 0.1985 -0.0005 7 6 3.5868 -1.1530 -0.0006 8 6 4.4081 -2.4165 0.0000 9 7 4.6737 -2.8257 1.3814 10 6 5.3953 -3.9370 1.6282 11 8 5.8253 -4.5978 0.7067 12 6 5.6690 -4.3576 3.0492 13 1 6.2174 -3.5679 3.5627 14 6 4.3434 -4.6099 3.7705 15 6 6.4902 -5.6211 3.0498 16 1 6.7092 -6.1232 2.1190 17 6 6.9622 -6.1360 4.2385 18 7 7.4089 -7.3720 4.2886 19 14 6.9600 -5.0807 5.7799 20 1 8.2476 -4.3479 5.8799 21 1 5.8405 -4.1073 5.7117 22 1 6.7899 -5.9478 6.9733 23 6 2.2008 -1.2012 -0.0065 24 6 1.4702 -2.5192 -0.0131 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5139 28 1 5.9412 0.2270 -0.8840 29 1 5.3526 -2.2361 -0.5134 30 1 3.8603 -3.2063 -0.5139 31 1 4.3295 -2.2973 2.1184 32 1 3.7449 -5.3155 3.1945 33 1 4.5410 -5.0235 4.7595 34 1 3.8002 -3.6703 3.8717 35 1 7.3420 -7.9437 3.5078 36 1 1.2898 -2.8398 1.0129 37 1 0.5179 -2.4041 -0.5306 38 1 2.0746 -3.2671 -0.5264 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327938514.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:24:27 Heat of formation + Delta-G solvation = -62.139853 kcal Electronic energy + Delta-G solvation = -21781.410985 eV Core-core repulsion = 18430.246235 eV Total energy + Delta-G solvation = -3351.164750 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.56407 -40.66289 -38.84863 -37.03534 -35.82760 -35.27865 -33.72763 -32.87396 -29.79702 -29.10243 -27.63743 -26.79279 -24.35401 -23.69657 -22.74495 -21.17598 -19.97913 -19.53567 -19.17538 -17.99352 -17.45265 -16.78101 -16.37762 -15.91778 -15.78067 -15.45414 -15.07320 -14.68539 -14.43314 -14.40995 -14.07810 -13.88446 -13.71383 -13.59661 -13.50322 -13.35387 -13.11634 -12.95524 -12.74249 -12.40232 -12.16149 -12.06794 -11.39476 -11.12279 -10.95259 -10.58426 -10.55319 -10.46195 -10.39983 -10.12168 -8.75566 -6.36167 -0.53269 -0.32714 1.50486 1.56882 1.73124 1.81261 2.05530 2.30534 2.53303 2.55007 3.04138 3.09478 3.14116 3.34938 3.60468 3.87772 4.06900 4.16221 4.34078 4.44966 4.46890 4.54138 4.68678 4.69817 4.74236 4.79713 4.83406 4.92642 5.02539 5.09556 5.14770 5.35165 5.38329 5.51175 5.83019 6.07515 6.38741 6.59034 6.63326 7.36113 7.45835 7.53688 8.64063 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.024756 B = 0.004272 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.753650 B = 6552.979439 C = 6722.357363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.060 3.940 3 N -0.240 5.240 4 N -0.295 5.295 5 C 0.270 3.730 6 O -0.481 6.481 7 C -0.130 4.130 8 C 0.171 3.829 9 N -0.716 5.716 10 C 0.531 3.469 11 O -0.584 6.584 12 C -0.006 4.006 13 H 0.064 0.936 14 C -0.132 4.132 15 C -0.596 4.596 16 H 0.018 0.982 17 C -0.022 4.022 18 N -0.940 5.940 19 Si 1.084 2.916 20 H -0.278 1.278 21 H -0.220 1.220 22 H -0.286 1.286 23 C -0.036 4.036 24 C -0.126 4.126 25 H 0.103 0.897 26 H 0.106 0.894 27 H 0.085 0.915 28 H 0.423 0.577 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.408 0.592 32 H 0.040 0.960 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.249 0.751 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.504 16.553 -8.043 25.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.087 4.087 3 N -0.084 5.084 4 N -0.145 5.145 5 C 0.083 3.917 6 O -0.289 6.289 7 C -0.142 4.142 8 C 0.048 3.952 9 N -0.369 5.369 10 C 0.320 3.680 11 O -0.462 6.462 12 C -0.028 4.028 13 H 0.081 0.919 14 C -0.190 4.190 15 C -0.634 4.634 16 H 0.036 0.964 17 C -0.219 4.219 18 N -0.576 5.576 19 Si 0.903 3.097 20 H -0.205 1.205 21 H -0.143 1.143 22 H -0.212 1.212 23 C -0.047 4.047 24 C -0.182 4.182 25 H 0.121 0.879 26 H 0.125 0.875 27 H 0.104 0.896 28 H 0.285 0.715 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.244 0.756 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.058 0.942 36 H 0.117 0.883 37 H 0.131 0.869 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.737 17.729 -6.575 25.252 hybrid contribution 0.576 -1.834 -2.236 2.949 sum -16.161 15.895 -8.812 24.320 Atomic orbital electron populations 1.20896 0.84153 1.05602 1.05235 1.23430 1.01028 0.88728 0.95466 1.72846 0.99812 1.26031 1.09703 1.72875 1.00598 1.27788 1.13212 1.20817 0.86412 0.89211 0.95298 1.84790 1.12872 1.95384 1.35874 1.21157 0.95022 0.95114 1.02935 1.19908 0.98580 0.91936 0.84802 1.45894 1.55852 1.27109 1.08084 1.21185 0.75524 0.78892 0.92377 1.90556 1.52496 1.55224 1.47957 1.19249 0.96678 0.97117 0.89766 0.91861 1.22012 0.95714 1.01187 1.00091 1.22048 1.36868 1.10166 0.94320 0.96408 1.27406 0.92226 0.97206 1.05033 1.70937 1.47416 1.07238 1.31999 0.83695 0.79135 0.75305 0.71516 1.20459 1.14299 1.21215 1.21296 0.92065 0.98724 0.92653 1.21126 1.01471 0.90584 1.05031 0.87905 0.87523 0.89625 0.71512 0.90946 0.89468 0.75609 0.94039 0.92638 0.90627 0.94202 0.88272 0.86950 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.84 9.43 71.23 0.67 -0.17 16 2 C 0.06 1.03 6.86 42.67 0.29 1.32 16 3 N -0.24 -5.76 11.42 -47.61 -0.54 -6.30 16 4 N -0.29 -7.89 11.53 -170.22 -1.96 -9.85 16 5 C 0.27 6.45 7.83 84.85 0.66 7.11 16 6 O -0.48 -10.79 12.74 -90.14 -1.15 -11.94 16 7 C -0.13 -2.75 5.31 -19.52 -0.10 -2.85 16 8 C 0.17 4.29 5.29 85.63 0.45 4.74 16 9 N -0.72 -21.44 5.45 -466.79 -2.55 -23.99 16 10 C 0.53 22.46 7.15 87.66 0.63 23.09 16 11 O -0.58 -30.23 15.47 -3.01 -0.05 -30.27 16 12 C -0.01 -0.28 2.19 -12.28 -0.03 -0.31 16 13 H 0.06 2.66 6.77 -2.39 -0.02 2.64 16 14 C -0.13 -4.88 8.32 71.98 0.60 -4.28 16 15 C -0.60 -34.91 8.65 25.60 0.22 -34.69 16 16 H 0.02 1.21 7.02 -2.91 -0.02 1.19 16 17 C -0.02 -1.28 5.33 84.65 0.45 -0.83 16 18 N -0.94 -60.18 13.70 21.45 0.29 -59.88 16 19 Si 1.08 47.66 26.17 68.60 1.80 49.46 16 20 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 21 H -0.22 -7.82 5.53 99.48 0.55 -7.27 16 22 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 23 C -0.04 -0.60 5.92 -19.64 -0.12 -0.71 16 24 C -0.13 -1.40 8.91 71.24 0.63 -0.77 16 25 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.11 0.42 6.81 -2.39 -0.02 0.41 16 27 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 28 H 0.42 5.33 9.06 -74.05 -0.67 4.66 16 29 H 0.07 1.93 7.63 -2.38 -0.02 1.91 16 30 H 0.09 2.11 6.16 -2.39 -0.01 2.10 16 31 H 0.41 10.37 8.01 -92.71 -0.74 9.63 16 32 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.05 2.11 5.06 -2.39 -0.01 2.09 16 34 H 0.07 2.04 7.75 -2.38 -0.02 2.02 16 35 H 0.25 16.47 8.73 -92.70 -0.81 15.66 16 36 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.11 0.60 6.84 -2.39 -0.02 0.58 16 38 H 0.08 1.03 6.16 -2.39 -0.01 1.02 16 Total: -1.00 -83.49 315.96 -0.27 -83.76 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -0.48 Total: 17.36 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 4.37 Total: -8.34 kcal Atomic # 7 Polarization: -95.27 SS G_CDS: -4.76 Total: -100.02 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: -1.20 Total: -42.21 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 1.80 Total: 49.46 kcal Total: -83.49 -0.27 -83.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327938514.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.621 kcal (2) G-P(sol) polarization free energy of solvation -83.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds