Wall clock time and date at job start Tue Mar 31 2020 02:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34676 * 126.59277 * 2 1 4 4 N 1.34121 * 108.01960 * 180.28608 * 3 2 1 5 5 C 1.30503 * 109.25836 * 359.73594 * 4 3 2 6 6 N 1.35037 * 108.69822 * 359.97438 * 5 4 3 7 7 C 1.46509 * 126.39887 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.46754 * 265.02303 * 7 6 5 9 9 O 1.21279 * 120.00069 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99717 * 179.97438 * 8 7 6 11 11 C 1.47427 * 125.64830 * 0.04945 * 10 8 7 12 12 C 1.54911 * 104.82984 * 204.08719 * 11 10 8 13 13 C 1.55157 * 101.58398 * 322.99011 * 12 11 10 14 14 O 1.42904 * 110.71700 * 277.14006 * 13 12 11 15 15 C 1.50693 * 110.71991 * 153.86821 * 13 12 11 16 16 H 1.07993 * 120.00641 * 5.63309 * 15 13 12 17 17 C 1.37885 * 119.99923 * 185.63993 * 15 13 12 18 18 N 1.31507 * 119.99993 * 186.09098 * 17 15 13 19 19 Si 1.86804 * 119.99808 * 6.09165 * 17 15 13 20 20 H 1.48496 * 109.47185 * 84.84226 * 19 17 15 21 21 H 1.48499 * 109.47044 * 204.84861 * 19 17 15 22 22 H 1.48501 * 109.46721 * 324.84329 * 19 17 15 23 23 C 1.47022 * 125.64866 * 179.97438 * 10 8 7 24 24 H 1.09005 * 109.46781 * 270.16252 * 1 2 3 25 25 H 1.08998 * 109.47144 * 30.15743 * 1 2 3 26 26 H 1.08998 * 109.47363 * 150.16366 * 1 2 3 27 27 H 1.07997 * 125.98458 * 359.97438 * 3 2 1 28 28 H 1.08002 * 125.65228 * 180.02562 * 5 4 3 29 29 H 1.08997 * 109.47390 * 145.01897 * 7 6 5 30 30 H 1.09002 * 109.46775 * 25.02040 * 7 6 5 31 31 H 1.08998 * 110.36792 * 322.92335 * 11 10 8 32 32 H 1.08993 * 110.36811 * 85.13904 * 11 10 8 33 33 H 1.08998 * 111.00297 * 204.91241 * 12 11 10 34 34 H 1.09005 * 111.00529 * 81.06247 * 12 11 10 35 35 H 0.96705 * 113.99729 * 293.52159 * 14 13 12 36 36 H 0.97004 * 119.99939 * 179.97438 * 18 17 15 37 37 H 1.09004 * 109.88334 * 59.56698 * 23 10 8 38 38 H 1.08996 * 109.88452 * 298.40139 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3098 1.0813 0.0000 4 7 3.5811 0.6541 -0.0064 5 6 3.5968 -0.6508 -0.0046 6 7 2.3229 -1.0990 0.0035 7 6 1.8943 -2.4999 0.0086 8 6 1.6213 -2.9467 -1.4046 9 8 1.7697 -2.1712 -2.3251 10 7 1.2122 -4.2081 -1.6453 11 6 0.9911 -5.2492 -0.6251 12 6 1.1500 -6.5895 -1.3854 13 6 0.5085 -6.2480 -2.7563 14 8 -0.9131 -6.3799 -2.6961 15 6 1.0807 -7.1193 -3.8445 16 1 1.7651 -7.9164 -3.5943 17 6 0.7306 -6.8989 -5.1598 18 7 1.1331 -7.7305 -6.0957 19 14 -0.3155 -5.4188 -5.6123 20 1 0.5579 -4.2313 -5.7910 21 1 -1.0416 -5.6943 -6.8781 22 1 -1.2946 -5.1545 -4.5275 23 6 0.9110 -4.7734 -2.9687 24 1 -0.3633 0.0029 1.0277 25 1 -0.3633 0.8886 -0.5163 26 1 -0.3634 -0.8914 -0.5113 27 1 1.9864 2.1117 -0.0004 28 1 4.4818 -1.2698 -0.0082 29 1 0.9862 -2.6000 0.6031 30 1 2.6809 -3.1190 0.4398 31 1 1.7376 -5.1705 0.1651 32 1 -0.0123 -5.1644 -0.2079 33 1 0.6027 -7.3891 -0.8862 34 1 2.2019 -6.8510 -1.5006 35 1 -1.2186 -7.2879 -2.5635 36 1 0.8865 -7.5756 -7.0209 37 1 1.7943 -4.7184 -3.6050 38 1 0.0870 -4.2263 -3.4267 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329138887.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:16 Heat of formation + Delta-G solvation = -32.167195 kcal Electronic energy + Delta-G solvation = -22276.020082 eV Core-core repulsion = 18926.155045 eV Total energy + Delta-G solvation = -3349.865038 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.12517 -41.15345 -39.21100 -36.25617 -35.05476 -34.57620 -32.88156 -31.95146 -30.44167 -28.99244 -27.34622 -26.56794 -24.34533 -22.45953 -21.79586 -21.40138 -20.32649 -19.25427 -18.61683 -18.13235 -17.33954 -16.94064 -16.62253 -16.11269 -16.00423 -15.37693 -15.22881 -14.98940 -14.68907 -14.52690 -14.20779 -13.97565 -13.73343 -13.59872 -13.51373 -13.37467 -13.26600 -13.08666 -12.72846 -12.42651 -12.13284 -12.04508 -11.49945 -11.09801 -10.97850 -10.90846 -10.51353 -10.29400 -9.76913 -9.24400 -8.47129 -6.58299 0.91470 1.24508 1.31827 1.37415 1.48039 1.64217 2.06002 2.20315 2.24340 2.90220 3.29116 3.54734 3.71022 3.76913 3.78876 3.86554 4.05033 4.15587 4.23067 4.30063 4.38167 4.50176 4.60445 4.70731 4.78655 4.82184 4.96562 4.99413 5.05347 5.24810 5.38109 5.39393 5.47819 5.79898 6.01565 6.17713 6.43901 6.56165 6.93136 7.08863 7.13387 7.28878 8.66959 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.026934 B = 0.004797 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.324273 B = 5836.155775 C = 6093.479851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.020 4.020 3 C -0.058 4.058 4 N -0.531 5.531 5 C 0.181 3.819 6 N -0.447 5.447 7 C 0.100 3.900 8 C 0.498 3.502 9 O -0.588 6.588 10 N -0.607 5.607 11 C 0.099 3.901 12 C -0.138 4.138 13 C 0.213 3.787 14 O -0.578 6.578 15 C -0.545 4.545 16 H 0.057 0.943 17 C 0.047 3.953 18 N -0.927 5.927 19 Si 0.912 3.088 20 H -0.298 1.298 21 H -0.296 1.296 22 H -0.218 1.218 23 C 0.114 3.886 24 H 0.100 0.900 25 H 0.088 0.912 26 H 0.051 0.949 27 H 0.180 0.820 28 H 0.230 0.770 29 H 0.154 0.846 30 H 0.168 0.832 31 H 0.121 0.879 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.384 0.616 36 H 0.268 0.732 37 H 0.048 0.952 38 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.564 7.372 19.320 20.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.134 4.134 3 C -0.204 4.204 4 N -0.249 5.249 5 C -0.101 4.101 6 N -0.130 5.130 7 C -0.025 4.025 8 C 0.287 3.713 9 O -0.468 6.468 10 N -0.340 5.340 11 C -0.022 4.022 12 C -0.176 4.176 13 C 0.172 3.828 14 O -0.387 6.387 15 C -0.583 4.583 16 H 0.075 0.925 17 C -0.154 4.154 18 N -0.565 5.565 19 Si 0.740 3.260 20 H -0.226 1.226 21 H -0.223 1.223 22 H -0.141 1.141 23 C -0.009 4.009 24 H 0.118 0.882 25 H 0.107 0.893 26 H 0.070 0.930 27 H 0.197 0.803 28 H 0.246 0.754 29 H 0.172 0.828 30 H 0.185 0.815 31 H 0.139 0.861 32 H 0.112 0.888 33 H 0.125 0.875 34 H 0.092 0.908 35 H 0.233 0.767 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.800 8.824 18.617 20.681 hybrid contribution -0.777 -0.641 -1.575 1.870 sum -2.577 8.183 17.042 19.080 Atomic orbital electron populations 1.20287 0.85547 1.03376 1.03957 1.21699 0.95826 0.86711 1.09193 1.22358 0.88406 0.99487 1.10138 1.70198 1.23496 1.10190 1.20993 1.25451 0.88120 0.91756 1.04791 1.45086 1.07328 1.06240 1.54356 1.21923 1.07550 0.80411 0.92608 1.21297 0.76969 0.80369 0.92662 1.90767 1.54249 1.53839 1.47923 1.48724 1.64920 1.11157 1.09247 1.22755 1.03800 0.85175 0.90460 1.23258 1.02075 0.97488 0.94817 1.19787 0.79897 0.89121 0.93983 1.86401 1.22458 1.34032 1.95770 1.21590 1.28766 1.16698 0.91260 0.92460 1.25563 0.95569 0.97443 0.96841 1.70006 1.46904 1.37769 1.01843 0.86493 0.81126 0.79948 0.78460 1.22554 1.22332 1.14072 1.22241 0.98282 0.95074 0.85333 0.88167 0.89332 0.92977 0.80259 0.75404 0.82805 0.81474 0.86143 0.88844 0.87503 0.90786 0.76688 0.92281 0.93410 0.94418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.35 10.08 71.23 0.72 -0.63 16 2 C -0.02 -0.49 6.95 40.95 0.28 -0.21 16 3 C -0.06 -1.58 11.79 83.53 0.98 -0.60 16 4 N -0.53 -16.15 11.25 -200.31 -2.25 -18.40 16 5 C 0.18 4.58 12.56 180.26 2.26 6.85 16 6 N -0.45 -10.57 2.24 -518.60 -1.16 -11.74 16 7 C 0.10 1.76 5.28 85.63 0.45 2.21 16 8 C 0.50 15.25 7.92 87.66 0.69 15.94 16 9 O -0.59 -25.06 16.75 -3.03 -0.05 -25.11 16 10 N -0.61 -18.99 3.33 -811.80 -2.70 -21.69 16 11 C 0.10 2.04 6.68 86.86 0.58 2.62 16 12 C -0.14 -3.86 6.23 31.99 0.20 -3.66 16 13 C 0.21 8.50 0.69 -10.35 -0.01 8.49 16 14 O -0.58 -21.90 10.72 -148.98 -1.60 -23.50 16 15 C -0.55 -27.90 8.69 25.60 0.22 -27.68 16 16 H 0.06 3.17 8.03 -2.91 -0.02 3.15 16 17 C 0.05 2.64 5.47 84.66 0.46 3.10 16 18 N -0.93 -55.40 13.96 21.45 0.30 -55.10 16 19 Si 0.91 45.51 23.96 68.60 1.64 47.15 16 20 H -0.30 -15.66 7.11 99.48 0.71 -14.95 16 21 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 22 H -0.22 -10.31 5.32 99.48 0.53 -9.78 16 23 C 0.11 4.86 4.34 86.73 0.38 5.23 16 24 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 25 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.05 1.08 7.96 -2.39 -0.02 1.06 16 27 H 0.18 4.03 8.06 -2.91 -0.02 4.01 16 28 H 0.23 4.07 8.06 -2.91 -0.02 4.04 16 29 H 0.15 1.65 8.03 -2.39 -0.02 1.63 16 30 H 0.17 1.50 7.84 -2.39 -0.02 1.48 16 31 H 0.12 1.31 7.48 -2.39 -0.02 1.30 16 32 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.07 2.18 8.04 -2.38 -0.02 2.16 16 35 H 0.38 11.98 9.07 -74.05 -0.67 11.31 16 36 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 37 H 0.05 2.34 7.52 -2.39 -0.02 2.33 16 38 H 0.04 1.77 5.49 -2.39 -0.01 1.76 16 Total: -1.00 -81.70 314.85 1.64 -80.06 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 0.23 Total: 16.65 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: 7.23 Total: 11.67 kcal Atomic # 7 Polarization: -101.10 SS G_CDS: -5.82 Total: -106.92 kcal Atomic # 8 Polarization: -46.96 SS G_CDS: -1.65 Total: -48.61 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.64 Total: 47.15 kcal Total: -81.70 1.64 -80.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329138887.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.894 kcal (2) G-P(sol) polarization free energy of solvation -81.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds