Wall clock time and date at job start Tue Mar 31 2020 02:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34668 * 126.59336 * 2 1 4 4 N 1.34126 * 108.02111 * 180.02562 * 3 2 1 5 5 C 1.30506 * 109.25452 * 359.72603 * 4 3 2 6 6 N 1.35046 * 108.69930 * 0.44224 * 5 4 3 7 7 C 1.46495 * 126.39306 * 179.82823 * 6 5 4 8 8 C 1.50703 * 109.47025 * 264.68214 * 7 6 5 9 9 O 1.21284 * 119.99581 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00093 * 179.97438 * 8 7 6 11 11 C 1.47423 * 125.64675 * 0.02957 * 10 8 7 12 12 C 1.54913 * 104.83089 * 155.83077 * 11 10 8 13 13 C 1.55160 * 101.57624 * 37.01185 * 12 11 10 14 14 O 1.42897 * 110.72162 * 83.04075 * 13 12 11 15 15 C 1.50702 * 110.71656 * 206.13323 * 13 12 11 16 16 H 1.08002 * 120.00299 * 118.55159 * 15 13 12 17 17 C 1.37884 * 119.99942 * 298.26718 * 15 13 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 13 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 13 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 C 1.47020 * 125.64834 * 179.97438 * 10 8 7 24 24 H 1.09003 * 109.47347 * 269.96126 * 1 2 3 25 25 H 1.09004 * 109.46979 * 29.95806 * 1 2 3 26 26 H 1.08999 * 109.47492 * 149.95864 * 1 2 3 27 27 H 1.08003 * 125.98755 * 0.03664 * 3 2 1 28 28 H 1.07997 * 125.65037 * 180.28992 * 5 4 3 29 29 H 1.09001 * 109.47194 * 144.68842 * 7 6 5 30 30 H 1.09000 * 109.47447 * 24.68785 * 7 6 5 31 31 H 1.09003 * 110.36676 * 36.99782 * 11 10 8 32 32 H 1.08990 * 110.36997 * 274.67168 * 11 10 8 33 33 H 1.08989 * 111.00550 * 278.93903 * 12 11 10 34 34 H 1.08995 * 111.00094 * 155.08083 * 12 11 10 35 35 H 0.96698 * 114.00670 * 63.83578 * 14 13 12 36 36 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 37 37 H 1.09002 * 109.88085 * 61.67684 * 23 10 8 38 38 H 1.09002 * 109.87937 * 300.51640 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0812 0.0000 4 7 3.5812 0.6540 -0.0006 5 6 3.5968 -0.6509 0.0050 6 7 2.3229 -1.0991 -0.0006 7 6 1.8943 -2.5000 -0.0008 8 6 1.6283 -2.9437 -1.4162 9 8 1.7821 -2.1663 -2.3344 10 7 1.2205 -4.2046 -1.6618 11 6 0.9949 -5.2480 -0.6451 12 6 -0.0087 -6.2296 -1.3002 13 6 0.4705 -6.2261 -2.7759 14 8 1.5615 -7.1314 -2.9554 15 6 -0.6643 -6.5707 -3.7058 16 1 -0.9883 -5.8580 -4.4498 17 6 -1.2850 -7.7982 -3.6106 18 7 -0.8904 -8.6661 -2.7046 19 14 -2.6865 -8.2283 -4.7682 20 1 -2.9361 -7.0895 -5.6879 21 1 -2.3239 -9.4321 -5.5587 22 1 -3.9133 -8.5057 -3.9788 23 6 0.9259 -4.7670 -2.9879 24 1 -0.3634 -0.0007 1.0277 25 1 -0.3633 0.8904 -0.5132 26 1 -0.3634 -0.8896 -0.5145 27 1 1.9865 2.1117 0.0006 28 1 4.4818 -1.2698 0.0104 29 1 0.9832 -2.6013 0.5890 30 1 2.6788 -3.1200 0.4331 31 1 0.5652 -4.8122 0.2569 32 1 1.9288 -5.7594 -0.4126 33 1 -1.0294 -5.8561 -1.2200 34 1 0.0770 -7.2248 -0.8640 35 1 1.3347 -8.0575 -2.7946 36 1 -1.3274 -9.5295 -2.6374 37 1 1.8225 -4.7447 -3.6075 38 1 0.1294 -4.1954 -3.4643 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329138888.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:22 Heat of formation + Delta-G solvation = -18.202333 kcal Electronic energy + Delta-G solvation = -22037.248206 eV Core-core repulsion = 18687.988730 eV Total energy + Delta-G solvation = -3349.259476 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.09448 -39.61944 -37.47201 -34.52052 -33.96133 -32.32610 -31.93106 -30.12996 -28.79074 -27.51510 -26.40098 -25.01084 -22.61773 -21.42108 -20.55653 -19.70587 -18.96478 -17.52632 -17.09571 -16.93150 -15.76851 -15.29891 -15.07516 -14.64332 -14.48080 -14.25236 -13.89038 -13.52052 -13.16468 -13.00456 -12.86156 -12.67802 -12.39492 -12.22001 -12.14191 -11.72074 -11.55483 -11.47598 -11.01698 -10.78423 -10.55205 -10.26431 -10.14844 -9.91102 -9.54221 -9.28182 -8.78995 -8.36961 -8.26141 -8.22650 -6.40279 -4.48252 1.99341 2.63854 2.68581 3.11611 3.21290 3.22653 3.25972 3.38616 4.17881 4.51912 4.56103 4.70843 4.76713 4.85710 4.88237 5.14079 5.31976 5.43629 5.47120 5.55654 5.70180 5.78132 5.82030 5.83164 6.00763 6.28641 6.39588 6.48713 6.71743 6.77099 6.80566 7.14521 7.18564 7.21077 7.61943 7.81401 7.87993 8.12121 8.29403 8.55075 9.18208 9.27263 10.67124 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.035132 B = 0.003948 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.812405 B = 7090.630621 C = 7348.925551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.012 4.012 3 C -0.033 4.033 4 N -0.494 5.494 5 C 0.188 3.812 6 N -0.440 5.440 7 C 0.089 3.911 8 C 0.503 3.497 9 O -0.534 6.534 10 N -0.604 5.604 11 C 0.089 3.911 12 C -0.134 4.134 13 C 0.247 3.753 14 O -0.586 6.586 15 C -0.537 4.537 16 H 0.065 0.935 17 C 0.073 3.927 18 N -0.896 5.896 19 Si 0.903 3.097 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.282 1.282 23 C 0.124 3.876 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.167 0.833 28 H 0.202 0.798 29 H 0.117 0.883 30 H 0.122 0.878 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.384 0.616 36 H 0.268 0.732 37 H 0.062 0.938 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.582 7.597 9.443 12.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C -0.181 4.181 4 N -0.212 5.212 5 C -0.094 4.094 6 N -0.123 5.123 7 C -0.037 4.037 8 C 0.289 3.711 9 O -0.411 6.411 10 N -0.337 5.337 11 C -0.033 4.033 12 C -0.172 4.172 13 C 0.207 3.793 14 O -0.395 6.395 15 C -0.575 4.575 16 H 0.083 0.917 17 C -0.130 4.130 18 N -0.535 5.535 19 Si 0.730 3.270 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.208 1.208 23 C 0.002 3.998 24 H 0.089 0.911 25 H 0.100 0.900 26 H 0.083 0.917 27 H 0.184 0.816 28 H 0.219 0.781 29 H 0.135 0.865 30 H 0.140 0.860 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.235 0.765 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.627 8.837 8.878 12.799 hybrid contribution -1.759 -1.599 -0.431 2.415 sum 0.869 7.238 8.448 11.158 Atomic orbital electron populations 1.20214 0.87446 1.03686 1.02240 1.21220 0.94547 0.86707 1.10180 1.21958 0.88448 0.98224 1.09433 1.70236 1.22444 1.08760 1.19729 1.24839 0.86989 0.91809 1.05793 1.44900 1.07455 1.05486 1.54448 1.21666 1.04284 0.80996 0.96790 1.20178 0.78779 0.81508 0.90683 1.90762 1.52340 1.52332 1.45680 1.48655 1.64584 1.09840 1.10633 1.22625 1.00401 0.89577 0.90711 1.23304 0.96847 0.98286 0.98806 1.19450 0.84664 0.84081 0.91115 1.86119 1.38545 1.21622 1.93197 1.21551 1.16120 1.01498 1.18342 0.91666 1.24986 0.97011 0.95846 0.95116 1.69690 1.42335 1.07810 1.33655 0.86352 0.81326 0.78614 0.80671 1.19557 1.20676 1.20765 1.22118 1.00248 0.94859 0.82529 0.91066 0.89955 0.91734 0.81602 0.78137 0.86498 0.85981 0.92083 0.91464 0.91320 0.89132 0.76549 0.92160 0.91926 0.90803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.08 36.01 0.36 -0.47 16 2 C -0.01 -0.17 6.95 -81.60 -0.57 -0.73 16 3 C -0.03 -0.48 11.79 -17.81 -0.21 -0.69 16 4 N -0.49 -7.76 11.25 -14.66 -0.16 -7.93 16 5 C 0.19 2.60 12.56 -90.37 -1.13 1.47 16 6 N -0.44 -5.98 2.24 -115.27 -0.26 -6.24 16 7 C 0.09 1.06 5.28 -5.19 -0.03 1.03 16 8 C 0.50 8.43 7.92 -10.98 -0.09 8.35 16 9 O -0.53 -11.20 16.76 5.55 0.09 -11.11 16 10 N -0.60 -10.64 3.33 -170.52 -0.57 -11.20 16 11 C 0.09 1.38 6.68 -2.53 -0.02 1.36 16 12 C -0.13 -2.61 5.48 -24.58 -0.13 -2.74 16 13 C 0.25 5.57 0.85 -89.94 -0.08 5.49 16 14 O -0.59 -13.83 13.09 -35.23 -0.46 -14.29 16 15 C -0.54 -13.38 8.21 -34.44 -0.28 -13.66 16 16 H 0.07 1.65 7.57 -52.49 -0.40 1.25 16 17 C 0.07 1.79 5.27 -17.82 -0.09 1.70 16 18 N -0.90 -21.80 10.66 55.43 0.59 -21.21 16 19 Si 0.90 19.49 29.54 -169.99 -5.02 14.47 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 23 C 0.12 2.62 6.22 -3.07 -0.02 2.60 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.76 7.96 -51.93 -0.41 0.35 16 27 H 0.17 1.92 8.06 -52.48 -0.42 1.49 16 28 H 0.20 2.10 8.06 -52.49 -0.42 1.67 16 29 H 0.12 1.11 7.73 -51.93 -0.40 0.71 16 30 H 0.12 1.09 8.13 -51.93 -0.42 0.66 16 31 H 0.06 0.73 7.48 -51.93 -0.39 0.34 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 1.38 8.04 -51.94 -0.42 0.97 16 34 H 0.09 1.85 7.55 -51.93 -0.39 1.46 16 35 H 0.38 9.09 7.41 45.56 0.34 9.43 16 36 H 0.27 6.28 8.31 -40.82 -0.34 5.94 16 37 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 38 H 0.07 1.61 7.66 -51.93 -0.40 1.21 16 LS Contribution 321.90 15.07 4.85 4.85 Total: -1.00 -30.43 321.90 -7.78 -38.21 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -4.56 Total: 10.75 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -2.29 Total: 3.70 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: -0.40 Total: -46.58 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.37 Total: -25.40 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.43 -7.78 -38.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329138888.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.012 kcal (2) G-P(sol) polarization free energy of solvation -30.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds