Wall clock time and date at job start Tue Mar 31 2020 02:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34133 * 125.98900 * 2 1 4 4 C 1.30491 * 109.25341 * 180.02562 * 3 2 1 5 5 N 1.35049 * 108.70301 * 359.76768 * 4 3 2 6 6 H 0.96997 * 126.39827 * 180.26687 * 5 4 3 7 7 C 1.34667 * 125.98695 * 180.02562 * 2 1 3 8 8 C 1.50691 * 126.59443 * 359.96529 * 7 2 1 9 9 C 1.50699 * 109.47498 * 84.99633 * 8 7 2 10 10 O 1.21287 * 119.99744 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00274 * 179.97438 * 9 8 7 12 12 C 1.47421 * 125.64539 * 0.02821 * 11 9 8 13 13 C 1.54917 * 104.82929 * 155.83778 * 12 11 9 14 14 C 1.55148 * 101.58107 * 37.00863 * 13 12 11 15 15 O 1.42894 * 110.72342 * 83.04256 * 14 13 12 16 16 C 1.50704 * 110.71734 * 206.13399 * 14 13 12 17 17 H 1.08004 * 119.99892 * 121.59863 * 16 14 13 18 18 C 1.37876 * 120.00088 * 301.32751 * 16 14 13 19 19 N 1.31515 * 120.00123 * 354.04885 * 18 16 14 20 20 Si 1.86808 * 119.99858 * 174.05026 * 18 16 14 21 21 H 1.48498 * 109.46940 * 94.98566 * 20 18 16 22 22 H 1.48494 * 109.46842 * 214.98418 * 20 18 16 23 23 H 1.48496 * 109.47234 * 334.98543 * 20 18 16 24 24 C 1.47022 * 125.65068 * 179.97438 * 11 9 8 25 25 H 1.08999 * 109.47475 * 269.99892 * 1 2 3 26 26 H 1.09004 * 109.47470 * 29.99659 * 1 2 3 27 27 H 1.09001 * 109.47411 * 149.99442 * 1 2 3 28 28 H 1.08000 * 125.64835 * 179.97438 * 4 3 2 29 29 H 1.09006 * 109.46840 * 324.99875 * 8 7 2 30 30 H 1.09008 * 109.47244 * 205.00053 * 8 7 2 31 31 H 1.08996 * 110.37151 * 36.99492 * 12 11 9 32 32 H 1.09011 * 110.36840 * 274.67053 * 12 11 9 33 33 H 1.08999 * 110.99902 * 278.93011 * 13 12 11 34 34 H 1.08999 * 111.00141 * 155.08736 * 13 12 11 35 35 H 0.96703 * 114.00533 * 58.29098 * 15 14 13 36 36 H 0.96997 * 119.99852 * 180.02562 * 19 18 16 37 37 H 1.09006 * 109.88107 * 61.67447 * 24 11 9 38 38 H 1.09000 * 109.88040 * 300.51653 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0853 0.0000 4 6 3.5448 0.7096 -0.0006 5 7 3.5912 -0.6401 0.0043 6 1 4.3913 -1.1885 0.0087 7 6 2.2983 -1.0897 -0.0005 8 6 1.8472 -2.5275 -0.0004 9 6 1.5779 -2.9696 -1.4157 10 8 1.7371 -2.1936 -2.3341 11 7 1.1611 -4.2276 -1.6609 12 6 0.9282 -5.2692 -0.6439 13 6 -0.0823 -6.2439 -1.2988 14 6 0.3967 -6.2440 -2.7745 15 8 1.4812 -7.1570 -2.9540 16 6 -0.7406 -6.5809 -3.7041 17 1 -1.0275 -5.8866 -4.4801 18 6 -1.4112 -7.7778 -3.5676 19 7 -0.9860 -8.6752 -2.7053 20 14 -2.9238 -8.1248 -4.6075 21 1 -2.5282 -8.8909 -5.8165 22 1 -3.8975 -8.9183 -3.8154 23 1 -3.5481 -6.8412 -5.0171 24 6 0.8624 -4.7882 -2.9869 25 1 -0.3634 0.0000 1.0276 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3634 -0.8899 -0.5139 28 1 4.4003 1.3687 -0.0011 29 1 0.9355 -2.6222 0.5895 30 1 2.6274 -3.1531 0.4335 31 1 0.5019 -4.8302 0.2580 32 1 1.8587 -5.7872 -0.4114 33 1 -1.1005 -5.8631 -1.2185 34 1 -0.0037 -7.2395 -0.8623 35 1 1.2715 -8.0694 -2.7117 36 1 -1.4576 -9.5173 -2.6095 37 1 1.7590 -4.7725 -3.6065 38 1 0.0699 -4.2111 -3.4633 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332495098.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:22 Heat of formation + Delta-G solvation = -31.435035 kcal Electronic energy + Delta-G solvation = -21967.925431 eV Core-core repulsion = 18618.092142 eV Total energy + Delta-G solvation = -3349.833289 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.08678 -39.46692 -37.31946 -34.35274 -33.07565 -32.65382 -32.27860 -29.96669 -28.92039 -28.13627 -26.00750 -24.77238 -22.46279 -21.65800 -20.12319 -19.55404 -18.83696 -17.60932 -17.29983 -16.71256 -15.65020 -15.18434 -14.99075 -14.79422 -14.53069 -14.22308 -13.65261 -13.32299 -12.96928 -12.76003 -12.71337 -12.53954 -12.12951 -12.03374 -11.96536 -11.54429 -11.47998 -11.35252 -10.94333 -10.70779 -10.48588 -10.16533 -9.95212 -9.85287 -9.54441 -9.38955 -8.68412 -8.29274 -8.16228 -8.08664 -6.33605 -4.39722 1.99938 2.95889 3.07547 3.15222 3.17505 3.25628 3.30133 3.57350 4.24228 4.54430 4.74779 4.90719 4.94871 5.00953 5.28121 5.35885 5.39185 5.49514 5.66823 5.79597 5.82477 5.92938 6.02063 6.06768 6.15257 6.21649 6.38588 6.62889 6.79603 6.83004 6.88993 7.21400 7.28746 7.37938 7.68878 7.99064 8.02765 8.09488 8.54992 8.63193 9.24670 9.36118 10.74522 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.034427 B = 0.003935 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.129563 B = 7113.798571 C = 7396.550525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.018 3.982 3 N -0.493 5.493 4 C 0.183 3.817 5 N -0.563 5.563 6 H 0.417 0.583 7 C 0.000 4.000 8 C -0.061 4.061 9 C 0.520 3.480 10 O -0.542 6.542 11 N -0.609 5.609 12 C 0.093 3.907 13 C -0.135 4.135 14 C 0.247 3.753 15 O -0.586 6.586 16 C -0.535 4.535 17 H 0.064 0.936 18 C 0.074 3.926 19 N -0.895 5.895 20 Si 0.901 3.099 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.271 1.271 24 C 0.124 3.876 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.206 0.794 29 H 0.114 0.886 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.382 0.618 36 H 0.268 0.732 37 H 0.059 0.941 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.934 8.518 9.772 14.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.111 4.111 3 N -0.213 5.213 4 C -0.100 4.100 5 N -0.166 5.166 6 H 0.255 0.745 7 C -0.116 4.116 8 C -0.102 4.102 9 C 0.307 3.693 10 O -0.420 6.420 11 N -0.342 5.342 12 C -0.030 4.030 13 C -0.174 4.174 14 C 0.206 3.794 15 O -0.395 6.395 16 C -0.574 4.574 17 H 0.082 0.918 18 C -0.129 4.129 19 N -0.534 5.534 20 Si 0.728 3.272 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.196 1.196 24 C 0.002 3.998 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.223 0.777 29 H 0.132 0.868 30 H 0.115 0.885 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.232 0.768 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.982 10.213 9.164 14.969 hybrid contribution -0.257 -1.957 -0.298 1.996 sum 5.725 8.256 8.866 13.400 Atomic orbital electron populations 1.20036 0.87839 1.02998 1.01717 1.20406 0.96368 0.87751 1.06569 1.70141 1.00569 1.30720 1.19852 1.24809 0.97321 0.81865 1.06017 1.43111 1.07963 1.08680 1.56881 0.74529 1.20243 0.84022 0.95550 1.11746 1.20018 1.03699 0.90400 0.96111 1.19999 0.77907 0.80778 0.90632 1.90710 1.52741 1.52319 1.46239 1.48661 1.64941 1.10427 1.10155 1.22543 0.99920 0.89571 0.90952 1.23303 0.97021 0.98323 0.98771 1.19483 0.84626 0.84124 0.91117 1.86137 1.40425 1.22623 1.90312 1.21507 1.15169 1.03966 1.16726 0.91764 1.24967 0.97467 0.95475 0.94960 1.69691 1.40487 1.07496 1.35730 0.86423 0.82141 0.78508 0.80086 1.20497 1.20953 1.19601 1.22074 1.00001 0.94804 0.82923 0.91579 0.91148 0.91365 0.77713 0.86810 0.88531 0.91985 0.91922 0.91288 0.89374 0.76805 0.92231 0.92254 0.90890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.13 36.01 0.36 -0.53 16 2 C 0.02 0.27 7.09 -82.85 -0.59 -0.32 16 3 N -0.49 -7.48 11.25 -10.87 -0.12 -7.61 16 4 C 0.18 2.13 13.04 -90.38 -1.18 0.95 16 5 N -0.56 -6.34 6.15 -10.30 -0.06 -6.40 16 6 H 0.42 3.32 8.96 -40.82 -0.37 2.96 16 7 C 0.00 0.00 5.73 -81.61 -0.47 -0.47 16 8 C -0.06 -0.78 4.82 -29.04 -0.14 -0.92 16 9 C 0.52 9.18 7.84 -10.99 -0.09 9.09 16 10 O -0.54 -11.67 16.36 5.55 0.09 -11.58 16 11 N -0.61 -11.32 3.33 -170.52 -0.57 -11.88 16 12 C 0.09 1.53 6.68 -2.53 -0.02 1.51 16 13 C -0.14 -2.75 5.43 -24.58 -0.13 -2.88 16 14 C 0.25 5.74 0.84 -89.94 -0.08 5.66 16 15 O -0.59 -14.21 13.08 -35.23 -0.46 -14.68 16 16 C -0.54 -13.73 8.20 -34.44 -0.28 -14.01 16 17 H 0.06 1.67 7.61 -52.48 -0.40 1.27 16 18 C 0.07 1.86 5.25 -17.82 -0.09 1.77 16 19 N -0.89 -22.32 10.75 55.43 0.60 -21.73 16 20 Si 0.90 19.88 29.54 -169.99 -5.02 14.86 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 C 0.12 2.71 6.22 -3.07 -0.02 2.69 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.07 0.92 7.89 -51.93 -0.41 0.51 16 28 H 0.21 1.44 8.06 -52.49 -0.42 1.02 16 29 H 0.11 1.24 7.74 -51.93 -0.40 0.84 16 30 H 0.10 0.99 8.14 -51.92 -0.42 0.57 16 31 H 0.06 0.82 7.48 -51.93 -0.39 0.43 16 32 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 33 H 0.07 1.44 8.04 -51.93 -0.42 1.03 16 34 H 0.09 1.85 7.56 -51.93 -0.39 1.46 16 35 H 0.38 9.21 7.53 45.56 0.34 9.55 16 36 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 37 H 0.06 1.37 8.07 -51.93 -0.42 0.95 16 38 H 0.07 1.65 7.68 -51.93 -0.40 1.25 16 LS Contribution 320.58 15.07 4.83 4.83 Total: -1.00 -31.62 320.58 -7.93 -39.56 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -4.50 Total: 12.06 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -2.72 Total: 2.56 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: -0.16 Total: -47.62 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.37 Total: -26.25 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.62 -7.93 -39.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332495098.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.122 kcal (2) G-P(sol) polarization free energy of solvation -31.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds