Wall clock time and date at job start Tue Mar 31 2020 02:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34133 * 125.98900 * 2 1 4 4 C 1.30491 * 109.25341 * 180.02562 * 3 2 1 5 5 N 1.35049 * 108.70301 * 359.76768 * 4 3 2 6 6 H 0.96997 * 126.39827 * 180.26687 * 5 4 3 7 7 C 1.34667 * 125.98695 * 180.02562 * 2 1 3 8 8 C 1.50691 * 126.59443 * 359.96529 * 7 2 1 9 9 C 1.50699 * 109.47498 * 84.99633 * 8 7 2 10 10 O 1.21287 * 119.99744 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00274 * 179.97438 * 9 8 7 12 12 C 1.47421 * 125.64539 * 0.02821 * 11 9 8 13 13 C 1.54917 * 104.82929 * 155.83778 * 12 11 9 14 14 C 1.55148 * 101.58107 * 37.00863 * 13 12 11 15 15 O 1.42894 * 110.72342 * 83.04256 * 14 13 12 16 16 C 1.50704 * 110.71734 * 206.13399 * 14 13 12 17 17 H 1.08004 * 119.99892 * 121.59863 * 16 14 13 18 18 C 1.37876 * 120.00088 * 301.32751 * 16 14 13 19 19 N 1.31515 * 120.00123 * 354.04885 * 18 16 14 20 20 Si 1.86808 * 119.99858 * 174.05026 * 18 16 14 21 21 H 1.48498 * 109.46940 * 94.98566 * 20 18 16 22 22 H 1.48494 * 109.46842 * 214.98418 * 20 18 16 23 23 H 1.48496 * 109.47234 * 334.98543 * 20 18 16 24 24 C 1.47022 * 125.65068 * 179.97438 * 11 9 8 25 25 H 1.08999 * 109.47475 * 269.99892 * 1 2 3 26 26 H 1.09004 * 109.47470 * 29.99659 * 1 2 3 27 27 H 1.09001 * 109.47411 * 149.99442 * 1 2 3 28 28 H 1.08000 * 125.64835 * 179.97438 * 4 3 2 29 29 H 1.09006 * 109.46840 * 324.99875 * 8 7 2 30 30 H 1.09008 * 109.47244 * 205.00053 * 8 7 2 31 31 H 1.08996 * 110.37151 * 36.99492 * 12 11 9 32 32 H 1.09011 * 110.36840 * 274.67053 * 12 11 9 33 33 H 1.08999 * 110.99902 * 278.93011 * 13 12 11 34 34 H 1.08999 * 111.00141 * 155.08736 * 13 12 11 35 35 H 0.96703 * 114.00533 * 58.29098 * 15 14 13 36 36 H 0.96997 * 119.99852 * 180.02562 * 19 18 16 37 37 H 1.09006 * 109.88107 * 61.67447 * 24 11 9 38 38 H 1.09000 * 109.88040 * 300.51653 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0853 0.0000 4 6 3.5448 0.7096 -0.0006 5 7 3.5912 -0.6401 0.0043 6 1 4.3913 -1.1885 0.0087 7 6 2.2983 -1.0897 -0.0005 8 6 1.8472 -2.5275 -0.0004 9 6 1.5779 -2.9696 -1.4157 10 8 1.7371 -2.1936 -2.3341 11 7 1.1611 -4.2276 -1.6609 12 6 0.9282 -5.2692 -0.6439 13 6 -0.0823 -6.2439 -1.2988 14 6 0.3967 -6.2440 -2.7745 15 8 1.4812 -7.1570 -2.9540 16 6 -0.7406 -6.5809 -3.7041 17 1 -1.0275 -5.8866 -4.4801 18 6 -1.4112 -7.7778 -3.5676 19 7 -0.9860 -8.6752 -2.7053 20 14 -2.9238 -8.1248 -4.6075 21 1 -2.5282 -8.8909 -5.8165 22 1 -3.8975 -8.9183 -3.8154 23 1 -3.5481 -6.8412 -5.0171 24 6 0.8624 -4.7882 -2.9869 25 1 -0.3634 0.0000 1.0276 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3634 -0.8899 -0.5139 28 1 4.4003 1.3687 -0.0011 29 1 0.9355 -2.6222 0.5895 30 1 2.6274 -3.1531 0.4335 31 1 0.5019 -4.8302 0.2580 32 1 1.8587 -5.7872 -0.4114 33 1 -1.1005 -5.8631 -1.2185 34 1 -0.0037 -7.2395 -0.8623 35 1 1.2715 -8.0694 -2.7117 36 1 -1.4576 -9.5173 -2.6095 37 1 1.7590 -4.7725 -3.6065 38 1 0.0699 -4.2111 -3.4633 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332495098.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:21 Heat of formation + Delta-G solvation = -54.211144 kcal Electronic energy + Delta-G solvation = -21968.913077 eV Core-core repulsion = 18618.092142 eV Total energy + Delta-G solvation = -3350.820935 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.03746 -40.95831 -38.95565 -36.06299 -34.22127 -34.02737 -33.74438 -31.50817 -30.28841 -29.54476 -27.34171 -26.27181 -23.94708 -22.63652 -21.68670 -20.83591 -20.11478 -19.12965 -18.57496 -18.15390 -17.06513 -16.88212 -16.46444 -16.16034 -15.80143 -15.63144 -15.02409 -14.83209 -14.23628 -13.99689 -13.84170 -13.72017 -13.63605 -13.34035 -13.20487 -13.16856 -13.06003 -12.98202 -12.66804 -12.42170 -12.25177 -11.95975 -11.27798 -11.03360 -10.93767 -10.74176 -10.58143 -10.14588 -9.61923 -9.15910 -8.25339 -6.37998 1.01157 1.40543 1.44774 1.53644 1.61081 2.01488 2.21768 2.34696 2.41651 3.00938 3.56389 3.69126 3.85049 3.96282 4.00574 4.07420 4.32391 4.37771 4.44967 4.46912 4.51852 4.59455 4.72157 4.85128 4.93262 5.02351 5.08177 5.17980 5.25393 5.26054 5.48739 5.54613 5.76891 5.81805 6.10953 6.56882 6.62052 6.67223 7.13979 7.15848 7.31229 7.43381 8.81005 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.034427 B = 0.003935 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.129563 B = 7113.798571 C = 7396.550525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.011 4.011 3 N -0.537 5.537 4 C 0.194 3.806 5 N -0.555 5.555 6 H 0.433 0.567 7 C -0.015 4.015 8 C -0.048 4.048 9 C 0.518 3.482 10 O -0.587 6.587 11 N -0.610 5.610 12 C 0.102 3.898 13 C -0.127 4.127 14 C 0.234 3.766 15 O -0.593 6.593 16 C -0.566 4.566 17 H 0.047 0.953 18 C 0.042 3.958 19 N -0.901 5.901 20 Si 0.954 3.046 21 H -0.280 1.280 22 H -0.274 1.274 23 H -0.276 1.276 24 C 0.130 3.870 25 H 0.087 0.913 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.247 0.753 29 H 0.139 0.861 30 H 0.131 0.869 31 H 0.108 0.892 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.380 0.620 36 H 0.272 0.728 37 H 0.038 0.962 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.540 8.519 11.786 15.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.139 4.139 3 N -0.257 5.257 4 C -0.090 4.090 5 N -0.160 5.160 6 H 0.273 0.727 7 C -0.131 4.131 8 C -0.088 4.088 9 C 0.308 3.692 10 O -0.468 6.468 11 N -0.343 5.343 12 C -0.020 4.020 13 C -0.166 4.166 14 C 0.194 3.806 15 O -0.402 6.402 16 C -0.604 4.604 17 H 0.065 0.935 18 C -0.160 4.160 19 N -0.540 5.540 20 Si 0.780 3.220 21 H -0.206 1.206 22 H -0.199 1.199 23 H -0.201 1.201 24 C 0.007 3.993 25 H 0.105 0.895 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.263 0.737 29 H 0.157 0.843 30 H 0.149 0.851 31 H 0.126 0.874 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.230 0.770 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.606 10.189 11.210 16.527 hybrid contribution -0.395 -1.920 -0.983 2.193 sum 6.210 8.269 10.227 14.545 Atomic orbital electron populations 1.20038 0.87468 1.02115 1.02800 1.20787 0.97237 0.88507 1.07366 1.70122 1.02164 1.31551 1.21893 1.25648 0.97533 0.82475 1.03334 1.43124 1.07925 1.08851 1.56052 0.72654 1.20358 0.84860 0.95684 1.12217 1.20039 1.06034 0.90273 0.92472 1.20925 0.76285 0.79567 0.92380 1.90691 1.54473 1.53352 1.48282 1.48707 1.65224 1.11367 1.09026 1.22612 0.99661 0.88394 0.91312 1.23083 0.97535 0.99113 0.96866 1.19604 0.83899 0.84245 0.92802 1.86120 1.40874 1.22645 1.90594 1.21723 1.16786 1.04421 1.17478 0.93514 1.25509 0.99355 0.95209 0.95910 1.69733 1.40890 1.07514 1.35874 0.85613 0.79597 0.78005 0.78816 1.20592 1.19903 1.20085 1.21732 0.98342 0.94353 0.84849 0.89479 0.92043 0.92173 0.73677 0.84306 0.85059 0.87386 0.90474 0.92331 0.90101 0.77047 0.91870 0.94309 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.70 10.13 71.24 0.72 -0.98 16 2 C -0.01 -0.30 7.09 41.39 0.29 -0.01 16 3 N -0.54 -15.61 11.25 -188.32 -2.12 -17.73 16 4 C 0.19 4.04 13.04 180.26 2.35 6.39 16 5 N -0.56 -10.98 6.15 -186.50 -1.15 -12.13 16 6 H 0.43 5.51 8.96 -92.71 -0.83 4.67 16 7 C -0.01 -0.38 5.73 40.95 0.23 -0.14 16 8 C -0.05 -1.06 4.82 29.10 0.14 -0.92 16 9 C 0.52 17.52 7.84 87.66 0.69 18.21 16 10 O -0.59 -25.29 16.36 -3.05 -0.05 -25.34 16 11 N -0.61 -21.92 3.33 -811.78 -2.70 -24.62 16 12 C 0.10 3.05 6.68 86.86 0.58 3.63 16 13 C -0.13 -5.03 5.43 31.99 0.17 -4.86 16 14 C 0.23 11.02 0.84 -10.36 -0.01 11.01 16 15 O -0.59 -29.03 13.08 -148.98 -1.95 -30.98 16 16 C -0.57 -29.65 8.20 25.60 0.21 -29.44 16 17 H 0.05 2.53 7.61 -2.91 -0.02 2.51 16 18 C 0.04 2.12 5.25 84.65 0.44 2.57 16 19 N -0.90 -44.60 10.75 21.45 0.23 -44.37 16 20 Si 0.95 40.78 29.54 68.60 2.03 42.80 16 21 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 22 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 23 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 24 C 0.13 5.85 6.22 86.73 0.54 6.39 16 25 H 0.09 1.77 8.14 -2.39 -0.02 1.76 16 26 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.06 1.59 7.89 -2.39 -0.02 1.57 16 28 H 0.25 2.59 8.06 -2.91 -0.02 2.57 16 29 H 0.14 2.42 7.74 -2.38 -0.02 2.40 16 30 H 0.13 2.03 8.14 -2.38 -0.02 2.01 16 31 H 0.11 2.31 7.48 -2.39 -0.02 2.29 16 32 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.06 2.41 8.04 -2.39 -0.02 2.39 16 34 H 0.08 3.31 7.56 -2.39 -0.02 3.29 16 35 H 0.38 18.44 7.53 -74.06 -0.56 17.88 16 36 H 0.27 12.79 8.31 -92.71 -0.77 12.02 16 37 H 0.04 1.85 8.07 -2.38 -0.02 1.83 16 38 H 0.05 2.60 7.68 -2.39 -0.02 2.58 16 Total: -1.00 -70.35 320.58 0.37 -69.98 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: -0.29 Total: 30.53 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: 6.37 Total: 11.84 kcal Atomic # 7 Polarization: -93.11 SS G_CDS: -5.74 Total: -98.85 kcal Atomic # 8 Polarization: -54.32 SS G_CDS: -2.00 Total: -56.32 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.80 kcal Total: -70.35 0.37 -69.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332495098.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.772 kcal (2) G-P(sol) polarization free energy of solvation -70.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds