Wall clock time and date at job start Tue Mar 31 2020 00:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39760 * 125.83847 * 2 1 4 4 C 1.36109 * 107.82449 * 180.15932 * 3 2 1 5 5 N 1.39479 * 126.21735 * 179.84446 * 4 3 2 6 6 C 1.34777 * 119.99460 * 359.69240 * 5 4 3 7 7 O 1.21293 * 120.00456 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99675 * 179.72541 * 6 5 4 9 9 C 1.53004 * 109.47208 * 180.27843 * 8 6 5 10 10 C 1.54031 * 113.81522 * 273.50519 * 9 8 6 11 11 O 1.44443 * 85.42487 * 223.23451 * 10 9 8 12 12 C 1.44172 * 93.38087 * 24.09280 * 11 10 9 13 13 N 1.35264 * 107.57265 * 359.58737 * 4 3 2 14 14 C 1.46490 * 126.04937 * 180.23556 * 13 4 3 15 15 C 1.50708 * 109.46990 * 90.00107 * 14 13 4 16 16 H 1.08000 * 119.99671 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00030 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99944 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 120.00077 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46926 * 90.00052 * 19 17 15 21 21 H 1.48503 * 109.47118 * 210.00020 * 19 17 15 22 22 H 1.48496 * 109.47100 * 329.99888 * 19 17 15 23 23 N 1.30848 * 125.83569 * 179.69263 * 2 1 3 24 24 H 1.09004 * 109.47206 * 270.28172 * 1 2 3 25 25 H 1.09002 * 109.46598 * 30.27555 * 1 2 3 26 26 H 1.08996 * 109.47328 * 150.27965 * 1 2 3 27 27 H 1.07998 * 126.08710 * 0.02562 * 3 2 1 28 28 H 0.97001 * 120.00055 * 179.69940 * 5 4 3 29 29 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 30 30 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 31 31 H 1.09005 * 112.99908 * 45.33368 * 9 8 6 32 32 H 1.08997 * 113.86947 * 337.34508 * 10 9 8 33 33 H 1.09003 * 113.86333 * 109.04489 * 10 9 8 34 34 H 1.09004 * 113.86116 * 221.76972 * 12 11 10 35 35 H 1.08992 * 113.98868 * 90.07312 * 12 11 10 36 36 H 1.09003 * 109.47347 * 209.99472 * 14 13 4 37 37 H 1.09003 * 109.47685 * 330.00117 * 14 13 4 38 38 H 0.97003 * 119.99979 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6196 0.7121 -0.0036 5 7 4.7513 1.5274 -0.0079 6 6 4.6157 2.8683 -0.0150 7 8 3.5096 3.3661 -0.0172 8 6 5.8384 3.7492 -0.0134 9 6 5.4090 5.2178 -0.0155 10 6 5.1545 5.7893 -1.4231 11 8 5.8732 6.9515 -0.9550 12 6 6.5852 6.2099 0.0558 13 7 3.6092 -0.6405 0.0035 14 6 4.7870 -1.5116 0.0076 15 6 5.1913 -1.8029 1.4299 16 1 4.6276 -1.3809 2.2488 17 6 6.2809 -2.6081 1.6857 18 7 6.6335 -2.8627 2.9269 19 14 7.2555 -3.3386 0.2694 20 1 8.3469 -2.4070 -0.1129 21 1 7.8384 -4.6387 0.6881 22 1 6.3560 -3.5509 -0.8929 23 7 2.2730 -1.0608 0.0057 24 1 -0.3634 0.0051 1.0277 25 1 -0.3632 0.8875 -0.5181 26 1 -0.3634 -0.8924 -0.5095 27 1 1.9902 2.1597 0.0004 28 1 5.6359 1.1293 -0.0058 29 1 6.4319 3.5456 0.8780 30 1 6.4354 3.5440 -0.9020 31 1 4.6110 5.4292 0.6964 32 1 5.6646 5.2461 -2.2185 33 1 4.1027 5.9770 -1.6393 34 1 6.6656 6.7305 1.0100 35 1 7.5336 5.7947 -0.2849 36 1 4.5496 -2.4460 -0.5011 37 1 5.6082 -1.0149 -0.5091 38 1 7.3998 -3.4295 3.1069 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333091670.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:48 Heat of formation + Delta-G solvation = 5.142576 kcal Electronic energy + Delta-G solvation = -21519.704188 eV Core-core repulsion = 18171.457023 eV Total energy + Delta-G solvation = -3348.247165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.47141 -41.43782 -40.21325 -36.27499 -35.54404 -33.99301 -33.43057 -31.14514 -30.01033 -28.03515 -27.49939 -27.37291 -24.41272 -23.00854 -21.34816 -20.97279 -20.67981 -19.26738 -18.53154 -17.84865 -17.37557 -16.92903 -16.60517 -16.53029 -16.23433 -15.90367 -15.53508 -15.17201 -14.83019 -14.37352 -14.16499 -13.96110 -13.72064 -13.51311 -13.47871 -13.15502 -12.91501 -12.70909 -12.54116 -12.12802 -11.92933 -11.86573 -11.76116 -11.57431 -11.41343 -10.91770 -10.88568 -10.59825 -9.62418 -9.07542 -8.42793 -6.55755 0.78342 1.30201 1.32867 1.40345 1.48204 1.64021 2.05397 2.20862 2.24774 2.77914 2.88833 3.24047 3.66535 3.76631 3.78231 4.17981 4.27086 4.36695 4.45400 4.47145 4.58021 4.60927 4.62726 4.69576 4.77688 4.86877 4.90421 4.94337 5.09371 5.13374 5.18904 5.22024 5.22190 5.28908 5.86429 5.98463 6.22456 6.34632 6.48797 6.94259 7.03136 7.09811 8.73672 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.013676 B = 0.005170 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.876274 B = 5414.348743 C = 7019.566224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.059 3.941 3 C -0.308 4.308 4 C 0.302 3.698 5 N -0.641 5.641 6 C 0.517 3.483 7 O -0.541 6.541 8 C -0.124 4.124 9 C -0.138 4.138 10 C 0.038 3.962 11 O -0.413 6.413 12 C 0.044 3.956 13 N -0.367 5.367 14 C 0.239 3.761 15 C -0.554 4.554 16 H 0.021 0.979 17 C 0.026 3.974 18 N -0.935 5.935 19 Si 0.950 3.050 20 H -0.242 1.242 21 H -0.281 1.281 22 H -0.248 1.248 23 N -0.331 5.331 24 H 0.081 0.919 25 H 0.097 0.903 26 H 0.076 0.924 27 H 0.168 0.832 28 H 0.423 0.577 29 H 0.128 0.872 30 H 0.135 0.865 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.050 0.950 37 H 0.069 0.931 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.490 14.038 -9.710 17.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.106 4.106 3 C -0.340 4.340 4 C 0.079 3.921 5 N -0.289 5.289 6 C 0.306 3.694 7 O -0.416 6.416 8 C -0.164 4.164 9 C -0.157 4.157 10 C -0.038 4.038 11 O -0.332 6.332 12 C -0.032 4.032 13 N -0.153 5.153 14 C 0.119 3.881 15 C -0.592 4.592 16 H 0.039 0.961 17 C -0.175 4.175 18 N -0.573 5.573 19 Si 0.771 3.229 20 H -0.165 1.165 21 H -0.206 1.206 22 H -0.172 1.172 23 N -0.156 5.156 24 H 0.100 0.900 25 H 0.115 0.885 26 H 0.095 0.905 27 H 0.186 0.814 28 H 0.261 0.739 29 H 0.146 0.854 30 H 0.153 0.847 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.102 0.898 34 H 0.120 0.880 35 H 0.126 0.874 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.041 13.280 -9.665 16.458 hybrid contribution 0.742 -0.377 0.353 0.904 sum 1.784 12.904 -9.312 16.012 Atomic orbital electron populations 1.20229 0.84012 1.04174 1.03583 1.22894 0.98744 0.90180 0.98825 1.21493 0.89208 1.00784 1.22506 1.18377 0.89893 0.82731 1.01085 1.43116 1.07357 1.06213 1.72256 1.21620 0.92901 0.80550 0.74283 1.90619 1.28650 1.73859 1.48520 1.21867 0.94049 0.92344 1.08126 1.24115 0.99618 0.93111 0.98873 1.24199 0.98198 0.85118 0.96325 1.89697 1.60009 1.29957 1.53582 1.24224 0.95473 0.90429 0.93047 1.48826 1.06068 1.02830 1.57527 1.19750 0.80578 0.90715 0.97090 1.21216 1.14061 1.33004 0.90943 0.96060 1.25826 0.97573 0.95103 0.98970 1.70037 1.27859 1.37803 1.21552 0.85697 0.79525 0.78931 0.78792 1.16548 1.20644 1.17199 1.77300 0.86373 1.23550 1.28355 0.90013 0.88478 0.90485 0.81439 0.73879 0.85362 0.84743 0.88677 0.88274 0.89802 0.88000 0.87394 0.93200 0.91290 0.91636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.71 10.44 71.24 0.74 -0.97 16 2 C 0.06 2.32 7.21 43.07 0.31 2.63 16 3 C -0.31 -12.25 9.58 22.14 0.21 -12.04 16 4 C 0.30 12.20 7.66 131.31 1.01 13.20 16 5 N -0.64 -19.95 5.42 -308.55 -1.67 -21.62 16 6 C 0.52 13.76 7.79 87.66 0.68 14.44 16 7 O -0.54 -17.73 12.92 -3.07 -0.04 -17.77 16 8 C -0.12 -1.91 5.55 29.85 0.17 -1.74 16 9 C -0.14 -2.34 3.35 -10.09 -0.03 -2.38 16 10 C 0.04 0.68 8.79 72.29 0.64 1.32 16 11 O -0.41 -8.73 12.46 -148.98 -1.86 -10.59 16 12 C 0.04 0.62 8.79 72.30 0.64 1.25 16 13 N -0.37 -16.74 3.60 -348.71 -1.26 -18.00 16 14 C 0.24 10.88 5.07 85.64 0.43 11.32 16 15 C -0.55 -30.60 9.94 25.60 0.25 -30.35 16 16 H 0.02 1.39 8.06 -2.91 -0.02 1.36 16 17 C 0.03 1.38 5.47 84.65 0.46 1.84 16 18 N -0.93 -54.89 13.96 21.45 0.30 -54.59 16 19 Si 0.95 38.44 27.47 68.60 1.88 40.33 16 20 H -0.24 -8.66 7.11 99.48 0.71 -7.96 16 21 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 22 H -0.25 -9.42 6.54 99.48 0.65 -8.77 16 23 N -0.33 -15.31 12.56 -47.45 -0.60 -15.91 16 24 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 25 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.17 6.43 5.83 -2.91 -0.02 6.41 16 28 H 0.42 11.40 7.96 -92.71 -0.74 10.66 16 29 H 0.13 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.13 1.25 7.88 -2.39 -0.02 1.24 16 31 H 0.09 2.01 7.74 -2.38 -0.02 1.99 16 32 H 0.10 1.38 7.92 -2.39 -0.02 1.36 16 33 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.11 0.96 8.10 -2.39 -0.02 0.94 16 36 H 0.05 2.31 7.20 -2.39 -0.02 2.29 16 37 H 0.07 2.65 6.93 -2.39 -0.02 2.63 16 38 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -76.25 323.56 2.56 -73.68 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: 0.29 Total: 25.94 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: 5.51 Total: -1.47 kcal Atomic # 7 Polarization: -106.90 SS G_CDS: -3.22 Total: -110.12 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -1.90 Total: -28.36 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 1.88 Total: 40.33 kcal Total: -76.25 2.56 -73.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333091670.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.825 kcal (2) G-P(sol) polarization free energy of solvation -76.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds