Wall clock time and date at job start Tue Mar 31 2020 03:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31139 * 126.54856 * 2 1 4 4 C 1.34494 * 105.61028 * 180.12159 * 3 2 1 5 5 C 1.50701 * 126.28432 * 179.90198 * 4 3 2 6 6 H 1.09002 * 110.88837 * 355.83761 * 5 4 3 7 7 C 1.55156 * 111.00646 * 231.90985 * 5 4 3 8 8 C 1.54313 * 102.86527 * 206.22939 * 7 5 4 9 9 N 1.47020 * 107.27387 * 22.52999 * 8 7 5 10 10 C 1.34780 * 125.64970 * 180.96286 * 9 8 7 11 11 O 1.21273 * 120.00083 * 184.72365 * 10 9 8 12 12 C 1.50706 * 119.99496 * 4.72528 * 10 9 8 13 13 H 1.09000 * 109.46984 * 24.82804 * 12 10 9 14 14 C 1.52993 * 109.46982 * 264.82745 * 12 10 9 15 15 C 1.50702 * 109.46681 * 144.82846 * 12 10 9 16 16 H 1.07997 * 120.00461 * 0.02562 * 15 12 10 17 17 C 1.37882 * 119.99730 * 179.97438 * 15 12 10 18 18 N 1.31512 * 119.99758 * 0.02562 * 17 15 12 19 19 Si 1.86797 * 119.99876 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.47182 * 270.00046 * 19 17 15 21 21 H 1.48501 * 109.47146 * 30.00218 * 19 17 15 22 22 H 1.48502 * 109.46934 * 150.00367 * 19 17 15 23 23 C 1.47429 * 108.70475 * 0.70088 * 9 8 7 24 24 N 1.29944 * 107.42579 * 359.64608 * 4 3 2 25 25 O 1.21294 * 110.25233 * 0.22320 * 24 4 3 26 26 H 1.08997 * 109.47174 * 180.24798 * 1 2 3 27 27 H 1.08996 * 109.47237 * 300.24861 * 1 2 3 28 28 H 1.09005 * 109.47669 * 60.24688 * 1 2 3 29 29 H 1.09000 * 110.72321 * 324.79635 * 7 5 4 30 30 H 1.09010 * 110.71531 * 87.88381 * 7 5 4 31 31 H 1.09001 * 109.98660 * 263.04882 * 8 7 5 32 32 H 1.09002 * 109.76984 * 141.88939 * 8 7 5 33 33 H 1.08999 * 109.47429 * 294.32352 * 14 12 10 34 34 H 1.09002 * 109.47654 * 54.32604 * 14 12 10 35 35 H 1.09000 * 109.47085 * 174.32346 * 14 12 10 36 36 H 0.97006 * 119.99812 * 180.02562 * 18 17 15 37 37 H 1.09000 * 110.36601 * 94.93488 * 23 9 8 38 38 H 1.08992 * 110.36635 * 217.14739 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0535 0.0000 4 6 3.5440 0.5729 -0.0027 5 6 4.8111 1.3887 -0.0060 6 1 4.5878 2.4531 -0.0797 7 6 5.7598 0.9382 -1.1480 8 6 7.1527 1.3316 -0.6129 9 7 7.0487 1.4211 0.8509 10 6 8.0479 1.7584 1.6902 11 8 7.8723 1.7174 2.8895 12 6 9.3833 2.1865 1.1383 13 1 9.2502 2.5833 0.1319 14 6 10.3254 0.9819 1.0911 15 6 9.9747 3.2524 2.0245 16 1 9.4376 3.5861 2.9000 17 6 11.2021 3.8008 1.7181 18 7 11.8564 3.3940 0.6523 19 14 11.9355 5.1214 2.8169 20 1 11.4976 6.4590 2.3431 21 1 11.4745 4.9156 4.2135 22 1 13.4174 5.0396 2.7676 23 6 5.6689 1.0870 1.2482 24 7 3.4644 -0.7241 0.0034 25 8 2.3029 -1.0735 0.0051 26 1 -0.3633 -1.0276 0.0044 27 1 -0.3633 0.5177 0.8877 28 1 -0.3634 0.5100 -0.8922 29 1 5.6923 -0.1386 -1.3033 30 1 5.5349 1.4742 -2.0702 31 1 7.4505 2.2966 -1.0231 32 1 7.8818 0.5691 -0.8869 33 1 10.5386 0.6473 2.1063 34 1 9.8533 0.1730 0.5335 35 1 11.2556 1.2672 0.5997 36 1 12.7201 3.7796 0.4369 37 1 5.5953 0.0323 1.5132 38 1 5.3534 1.7105 2.0846 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333630639.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:11 Heat of formation + Delta-G solvation = 5.148662 kcal Electronic energy + Delta-G solvation = -21575.056575 eV Core-core repulsion = 18226.809674 eV Total energy + Delta-G solvation = -3348.246901 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -46.68194 -41.12447 -38.85186 -36.83766 -35.82522 -34.74221 -32.94101 -31.94004 -30.27686 -29.62654 -27.31763 -26.35491 -24.72441 -23.75850 -23.38542 -21.27290 -20.25145 -19.17879 -18.75436 -18.38040 -18.02936 -17.15729 -16.76302 -15.97358 -15.65860 -15.44020 -14.88218 -14.68512 -14.57786 -14.17049 -14.13721 -13.96220 -13.78710 -13.41448 -13.29375 -12.97370 -12.96193 -12.69710 -12.68056 -12.63155 -12.27978 -12.21334 -12.14719 -12.08587 -11.85453 -11.11925 -10.87321 -10.65931 -10.39087 -9.69011 -8.19019 -6.30170 0.14579 1.08576 1.39358 1.40694 1.51965 1.78142 1.91089 1.99083 2.42287 2.61309 2.95753 3.10579 3.32612 3.51363 3.73910 4.07291 4.11712 4.17764 4.25702 4.48532 4.55107 4.63109 4.64452 4.67320 4.73659 4.75835 4.82425 4.90885 4.98454 5.00665 5.07585 5.16298 5.29116 5.45363 5.67158 5.85650 6.12047 6.53845 6.74111 7.15265 7.29610 7.39878 8.87377 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.040796 B = 0.003434 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.183594 B = 8151.842124 C = 8341.521718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.189 3.811 3 N -0.509 5.509 4 C 0.178 3.822 5 C -0.006 4.006 6 H 0.123 0.877 7 C -0.104 4.104 8 C 0.100 3.900 9 N -0.627 5.627 10 C 0.537 3.463 11 O -0.591 6.591 12 C 0.036 3.964 13 H 0.047 0.953 14 C -0.115 4.115 15 C -0.533 4.533 16 H 0.040 0.960 17 C 0.024 3.976 18 N -0.907 5.907 19 Si 0.957 3.043 20 H -0.269 1.269 21 H -0.281 1.281 22 H -0.273 1.273 23 C 0.119 3.881 24 N -0.398 5.398 25 O 0.077 5.923 26 H 0.122 0.878 27 H 0.116 0.884 28 H 0.121 0.879 29 H 0.084 0.916 30 H 0.118 0.882 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.018 0.982 34 H 0.039 0.961 35 H 0.077 0.923 36 H 0.267 0.733 37 H 0.059 0.941 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.437 -7.196 -8.586 25.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.031 4.031 3 N -0.243 5.243 4 C -0.095 4.095 5 C -0.027 4.027 6 H 0.141 0.859 7 C -0.142 4.142 8 C -0.022 4.022 9 N -0.362 5.362 10 C 0.329 3.671 11 O -0.471 6.471 12 C 0.015 3.985 13 H 0.065 0.935 14 C -0.173 4.173 15 C -0.571 4.571 16 H 0.059 0.941 17 C -0.176 4.176 18 N -0.546 5.546 19 Si 0.783 3.217 20 H -0.194 1.194 21 H -0.207 1.207 22 H -0.198 1.198 23 C -0.005 4.005 24 N -0.106 5.106 25 O 0.017 5.983 26 H 0.141 0.859 27 H 0.135 0.865 28 H 0.139 0.861 29 H 0.103 0.897 30 H 0.137 0.863 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.037 0.963 34 H 0.058 0.942 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.498 -7.258 -8.006 24.061 hybrid contribution 0.564 0.602 0.882 1.208 sum -20.934 -6.656 -7.124 23.093 Atomic orbital electron populations 1.20783 0.76196 1.07788 1.07016 1.29923 1.00547 0.79517 0.93064 1.71895 1.00145 1.30160 1.22102 1.25338 0.94905 0.88136 1.01101 1.20599 0.86389 0.99458 0.96230 0.85868 1.22718 0.90739 1.03010 0.97744 1.22222 0.98620 1.02890 0.78482 1.48662 1.09730 1.69233 1.08581 1.21550 0.86238 0.73785 0.85489 1.90508 1.83455 1.55540 1.17591 1.18776 0.87211 0.95180 0.97298 0.93533 1.21496 1.01358 0.95279 0.99147 1.21139 1.04751 1.20911 1.10307 0.94136 1.25578 0.96665 0.98708 0.96615 1.69944 1.15000 1.43271 1.26349 0.85569 0.77763 0.79529 0.78889 1.19407 1.20664 1.19766 1.22044 0.81642 1.00057 0.96741 1.74612 0.98428 1.15806 1.21785 1.85279 1.11082 1.36235 1.65674 0.85911 0.86548 0.86054 0.89748 0.86326 0.90081 0.90354 0.96280 0.94187 0.90440 0.92337 0.92264 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.22 10.51 71.24 0.75 0.53 16 2 C 0.19 3.05 8.51 88.38 0.75 3.80 16 3 N -0.51 -11.69 11.55 -303.22 -3.50 -15.19 16 4 C 0.18 4.56 6.89 138.46 0.95 5.51 16 5 C -0.01 -0.16 3.57 -10.15 -0.04 -0.19 16 6 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 7 C -0.10 -2.31 6.41 31.78 0.20 -2.11 16 8 C 0.10 2.93 6.19 86.73 0.54 3.47 16 9 N -0.63 -24.30 3.33 -811.81 -2.70 -27.00 16 10 C 0.54 26.73 6.83 87.66 0.60 27.32 16 11 O -0.59 -33.87 16.42 -3.01 -0.05 -33.92 16 12 C 0.04 1.91 2.27 -12.29 -0.03 1.88 16 13 H 0.05 2.39 6.90 -2.39 -0.02 2.38 16 14 C -0.11 -5.68 8.86 71.98 0.64 -5.04 16 15 C -0.53 -31.48 8.32 25.60 0.21 -31.27 16 16 H 0.04 2.55 7.26 -2.91 -0.02 2.53 16 17 C 0.02 1.37 5.30 84.66 0.45 1.82 16 18 N -0.91 -50.95 11.38 21.45 0.24 -50.71 16 19 Si 0.96 45.05 29.54 68.60 2.03 47.07 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 23 C 0.12 4.03 6.35 86.85 0.55 4.58 16 24 N -0.40 -10.32 11.86 -60.35 -0.72 -11.03 16 25 O 0.08 1.58 11.31 74.89 0.85 2.43 16 26 H 0.12 -0.16 8.14 -2.39 -0.02 -0.18 16 27 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 28 H 0.12 0.10 8.14 -2.38 -0.02 0.08 16 29 H 0.08 1.88 7.83 -2.39 -0.02 1.86 16 30 H 0.12 1.97 8.14 -2.38 -0.02 1.95 16 31 H 0.08 2.34 7.63 -2.39 -0.02 2.32 16 32 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.08 4.04 6.24 -2.39 -0.01 4.03 16 36 H 0.27 14.13 8.31 -92.70 -0.77 13.36 16 37 H 0.06 2.06 7.98 -2.39 -0.02 2.04 16 38 H 0.06 2.31 8.08 -2.39 -0.02 2.29 16 Total: -1.00 -75.94 322.09 2.80 -73.14 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: 1.07 Total: 4.92 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: 5.58 Total: 10.30 kcal Atomic # 7 Polarization: -97.26 SS G_CDS: -6.68 Total: -103.93 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: 0.80 Total: -31.50 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -75.94 2.80 -73.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333630639.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.289 kcal (2) G-P(sol) polarization free energy of solvation -75.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds