Wall clock time and date at job start Tue Mar 31 2020 03:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31127 * 126.54824 * 2 1 4 4 C 1.34498 * 105.61425 * 180.12619 * 3 2 1 5 5 C 1.50693 * 126.29178 * 179.90831 * 4 3 2 6 6 H 1.09008 * 110.91602 * 355.80633 * 5 4 3 7 7 C 1.55158 * 111.00501 * 231.90859 * 5 4 3 8 8 C 1.54311 * 102.86495 * 206.22849 * 7 5 4 9 9 N 1.47020 * 107.27619 * 22.51873 * 8 7 5 10 10 C 1.34781 * 125.64784 * 180.96578 * 9 8 7 11 11 O 1.21278 * 120.00102 * 354.02366 * 10 9 8 12 12 C 1.50704 * 119.99682 * 174.29081 * 10 9 8 13 13 H 1.08996 * 109.47140 * 322.86605 * 12 10 9 14 14 C 1.53004 * 109.46649 * 82.86424 * 12 10 9 15 15 C 1.50697 * 109.46910 * 202.86130 * 12 10 9 16 16 H 1.08000 * 120.00373 * 0.02562 * 15 12 10 17 17 C 1.37875 * 119.99817 * 180.02562 * 15 12 10 18 18 N 1.31516 * 120.00048 * 0.02562 * 17 15 12 19 19 Si 1.86808 * 120.00060 * 180.02562 * 17 15 12 20 20 H 1.48495 * 109.46783 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.46826 * 120.00041 * 19 17 15 22 22 H 1.48501 * 109.47190 * 240.00168 * 19 17 15 23 23 C 1.47418 * 108.70299 * 0.71161 * 9 8 7 24 24 N 1.29955 * 107.42082 * 359.63877 * 4 3 2 25 25 O 1.21297 * 110.24831 * 0.23196 * 24 4 3 26 26 H 1.08998 * 109.46827 * 180.25029 * 1 2 3 27 27 H 1.09007 * 109.47043 * 300.24915 * 1 2 3 28 28 H 1.08998 * 109.47523 * 60.24566 * 1 2 3 29 29 H 1.09001 * 110.72038 * 324.78531 * 7 5 4 30 30 H 1.09001 * 110.72482 * 87.87821 * 7 5 4 31 31 H 1.09007 * 109.98585 * 263.04614 * 8 7 5 32 32 H 1.08997 * 109.77730 * 141.88313 * 8 7 5 33 33 H 1.08994 * 109.47413 * 306.56502 * 14 12 10 34 34 H 1.09005 * 109.47022 * 66.56692 * 14 12 10 35 35 H 1.08999 * 109.47082 * 186.56561 * 14 12 10 36 36 H 0.97001 * 119.99598 * 179.97438 * 18 17 15 37 37 H 1.09005 * 110.37263 * 94.93214 * 23 9 8 38 38 H 1.09003 * 110.36594 * 217.14727 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0534 0.0000 4 6 3.5441 0.5729 -0.0029 5 6 4.8111 1.3886 -0.0060 6 1 4.5884 2.4531 -0.0801 7 6 5.7598 0.9381 -1.1481 8 6 7.1527 1.3315 -0.6130 9 7 7.0488 1.4211 0.8508 10 6 8.0480 1.7583 1.6900 11 8 9.1723 1.9139 1.2627 12 6 7.7694 1.9362 3.1604 13 1 6.7912 2.3987 3.2914 14 6 7.7846 0.5710 3.8510 15 6 8.8282 2.8189 3.7691 16 1 9.6232 3.2123 3.1529 17 6 8.7821 3.1245 5.1127 18 7 7.8143 2.6452 5.8633 19 14 10.0942 4.2194 5.8672 20 1 11.0634 4.6254 4.8180 21 1 9.4565 5.4290 6.4463 22 1 10.8054 3.4744 6.9371 23 6 5.6690 1.0869 1.2481 24 7 3.4645 -0.7242 0.0034 25 8 2.3029 -1.0735 0.0051 26 1 -0.3633 -1.0277 0.0045 27 1 -0.3633 0.5177 0.8878 28 1 -0.3634 0.5100 -0.8921 29 1 5.6923 -0.1386 -1.3034 30 1 5.5350 1.4741 -2.0702 31 1 7.4506 2.2965 -1.0232 32 1 7.8818 0.5690 -0.8869 33 1 7.1018 -0.1045 3.3358 34 1 8.7938 0.1599 3.8211 35 1 7.4693 0.6849 4.8881 36 1 7.7822 2.8599 6.8087 37 1 5.5954 0.0321 1.5132 38 1 5.3536 1.7105 2.0846 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333630642.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:21 Heat of formation + Delta-G solvation = 30.526798 kcal Electronic energy + Delta-G solvation = -21750.900681 eV Core-core repulsion = 18403.754259 eV Total energy + Delta-G solvation = -3347.146422 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.74680 -39.54784 -37.30254 -35.80972 -33.78215 -33.73065 -31.40459 -30.26415 -29.14125 -28.79041 -25.16292 -24.73024 -23.69301 -23.01787 -21.37301 -20.27015 -18.69729 -18.20245 -17.73616 -16.52365 -15.92926 -15.83940 -15.20909 -14.76087 -14.18060 -13.90380 -13.79502 -13.58613 -13.40204 -13.21224 -12.74579 -12.62794 -12.36864 -12.25931 -12.10378 -11.48192 -11.40246 -11.26159 -11.12359 -10.99116 -10.83697 -10.66632 -10.62734 -10.24065 -9.99897 -9.93914 -8.96280 -8.63152 -8.34423 -8.09433 -6.03226 -4.06152 0.99002 2.04290 2.64738 3.26056 3.32805 3.40207 3.48353 3.66738 3.72293 3.89548 4.47330 4.51393 4.63770 4.65379 4.86575 4.91984 5.06708 5.27620 5.30385 5.31867 5.42436 5.57288 5.66439 5.79178 5.83981 5.89619 6.03013 6.08287 6.18484 6.66444 6.82864 6.89373 6.99836 7.47831 7.75949 7.99010 8.03798 8.10637 8.37990 9.00263 9.19015 9.58744 11.04838 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.024690 B = 0.004061 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.811942 B = 6892.430893 C = 7576.713201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.173 3.827 3 N -0.479 5.479 4 C 0.190 3.810 5 C -0.018 4.018 6 H 0.117 0.883 7 C -0.119 4.119 8 C 0.108 3.892 9 N -0.631 5.631 10 C 0.539 3.461 11 O -0.541 6.541 12 C 0.035 3.965 13 H 0.047 0.953 14 C -0.127 4.127 15 C -0.501 4.501 16 H 0.071 0.929 17 C 0.060 3.940 18 N -0.895 5.895 19 Si 0.900 3.100 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.120 3.880 24 N -0.376 5.376 25 O 0.077 5.923 26 H 0.096 0.904 27 H 0.104 0.896 28 H 0.102 0.898 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.010 0.990 34 H 0.036 0.964 35 H 0.090 0.910 36 H 0.260 0.740 37 H 0.069 0.931 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.943 -6.075 -12.528 21.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.048 4.048 3 N -0.214 5.214 4 C -0.083 4.083 5 C -0.039 4.039 6 H 0.135 0.865 7 C -0.158 4.158 8 C -0.015 4.015 9 N -0.369 5.369 10 C 0.331 3.669 11 O -0.417 6.417 12 C 0.014 3.986 13 H 0.064 0.936 14 C -0.185 4.185 15 C -0.539 4.539 16 H 0.089 0.911 17 C -0.141 4.141 18 N -0.535 5.535 19 Si 0.727 3.273 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.005 4.005 24 N -0.083 5.083 25 O 0.018 5.982 26 H 0.114 0.886 27 H 0.122 0.878 28 H 0.120 0.880 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.029 0.971 34 H 0.055 0.945 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.484 -6.046 -12.498 20.797 hybrid contribution 0.331 0.471 0.448 0.730 sum -15.153 -5.575 -12.050 20.147 Atomic orbital electron populations 1.20376 0.80270 1.05526 1.05671 1.28841 0.98939 0.80862 0.96122 1.71890 1.00245 1.28922 1.20301 1.25407 0.94560 0.88040 1.00329 1.20774 0.86365 0.98939 0.97785 0.86487 1.22734 0.93510 1.02368 0.97223 1.21780 0.95988 1.01485 0.82272 1.48776 1.10563 1.71479 1.06058 1.21844 0.82541 0.72947 0.89536 1.90544 1.21896 1.50558 1.78672 1.18878 0.99481 0.96026 0.84250 0.93552 1.21679 0.98879 0.94666 1.03276 1.21125 1.10238 1.28601 0.93958 0.91089 1.24940 0.96003 0.96195 0.96974 1.69900 1.32109 1.45108 1.06338 0.86395 0.81686 0.80106 0.79072 1.19554 1.21018 1.20967 1.22168 0.81439 1.01282 0.95606 1.74630 0.97095 1.15643 1.20921 1.85312 1.11489 1.35771 1.65643 0.88553 0.87801 0.87958 0.90102 0.89713 0.91526 0.91595 0.97104 0.94505 0.89131 0.92991 0.91302 0.89230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.23 10.51 36.01 0.38 0.15 16 2 C 0.17 1.64 8.51 -13.06 -0.11 1.53 16 3 N -0.48 -5.99 11.55 -9.87 -0.11 -6.10 16 4 C 0.19 2.56 6.89 -156.37 -1.08 1.48 16 5 C -0.02 -0.24 3.57 -89.63 -0.32 -0.56 16 6 H 0.12 1.49 8.14 -51.92 -0.42 1.07 16 7 C -0.12 -1.46 6.41 -24.90 -0.16 -1.62 16 8 C 0.11 1.67 6.87 -3.07 -0.02 1.65 16 9 N -0.63 -12.10 3.33 -170.53 -0.57 -12.66 16 10 C 0.54 13.03 6.96 -10.98 -0.08 12.95 16 11 O -0.54 -14.76 16.10 5.56 0.09 -14.67 16 12 C 0.03 0.90 2.05 -92.92 -0.19 0.71 16 13 H 0.05 1.21 6.87 -51.93 -0.36 0.86 16 14 C -0.13 -3.11 8.85 37.16 0.33 -2.79 16 15 C -0.50 -14.51 8.33 -34.44 -0.29 -14.80 16 16 H 0.07 2.17 6.99 -52.49 -0.37 1.80 16 17 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 18 N -0.90 -25.46 11.39 55.43 0.63 -24.83 16 19 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 20 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 C 0.12 1.97 5.76 -2.53 -0.01 1.95 16 24 N -0.38 -5.13 11.86 30.90 0.37 -4.77 16 25 O 0.08 0.88 11.31 18.12 0.20 1.08 16 26 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 27 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.08 1.00 7.83 -51.93 -0.41 0.59 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.01 0.22 7.59 -51.93 -0.39 -0.18 16 34 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 2.37 6.27 -51.93 -0.33 2.04 16 36 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.07 1.15 7.88 -51.93 -0.41 0.74 16 38 H 0.09 1.54 6.83 -51.93 -0.35 1.18 16 LS Contribution 320.12 15.07 4.82 4.82 Total: -1.00 -34.27 320.12 -6.36 -40.63 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -5.13 Total: -2.76 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -1.64 Total: 2.24 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: 0.32 Total: -48.36 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.29 Total: -13.59 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.27 -6.36 -40.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333630642.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.162 kcal (2) G-P(sol) polarization free energy of solvation -34.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds