Wall clock time and date at job start Tue Mar 31 2020 00:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38042 * 126.29869 * 2 1 4 4 C 1.47437 * 126.41011 * 0.02570 * 3 2 1 5 5 O 1.21607 * 120.00040 * 0.29429 * 4 3 2 6 6 N 1.34779 * 119.99824 * 180.28415 * 4 3 2 7 7 C 1.47057 * 136.05847 * 359.63260 * 6 4 3 8 8 C 1.53758 * 87.89034 * 152.96175 * 7 6 4 9 9 C 1.47066 * 136.05276 * 180.02562 * 6 4 3 10 10 H 1.08999 * 113.47283 * 92.30804 * 9 6 4 11 11 C 1.52998 * 113.46666 * 321.86000 * 9 6 4 12 12 O 1.42901 * 109.47637 * 295.00355 * 11 9 6 13 13 C 1.41285 * 107.17817 * 180.24886 * 3 2 1 14 14 N 1.30449 * 108.01905 * 359.78148 * 13 3 2 15 15 N 1.34257 * 126.29065 * 179.87228 * 2 1 3 16 16 C 1.46505 * 125.75321 * 0.02562 * 15 2 1 17 17 C 1.50703 * 109.47064 * 269.71740 * 16 15 2 18 18 H 1.07996 * 119.99751 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00001 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00094 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99955 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47171 * 89.99544 * 21 19 17 23 23 H 1.48500 * 109.46632 * 209.99795 * 21 19 17 24 24 H 1.48494 * 109.47053 * 329.99231 * 21 19 17 25 25 H 1.09004 * 109.46710 * 270.15988 * 1 2 3 26 26 H 1.09002 * 109.46877 * 30.15019 * 1 2 3 27 27 H 1.08994 * 109.47028 * 150.15100 * 1 2 3 28 28 H 1.09000 * 113.47037 * 267.69635 * 7 6 4 29 29 H 1.08999 * 113.47100 * 38.13305 * 7 6 4 30 30 H 1.08994 * 114.39479 * 272.68180 * 8 7 6 31 31 H 1.08998 * 114.26680 * 139.78727 * 8 7 6 32 32 H 1.09003 * 109.47233 * 55.00876 * 11 9 6 33 33 H 1.09003 * 109.47027 * 175.00857 * 11 9 6 34 34 H 0.96693 * 114.00539 * 180.02562 * 12 11 9 35 35 H 1.07997 * 125.99717 * 179.78030 * 13 3 2 36 36 H 1.09002 * 109.47068 * 29.71708 * 16 15 2 37 37 H 1.09001 * 109.47372 * 149.71796 * 16 15 2 38 38 H 0.97000 * 120.00333 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1125 0.0000 4 6 1.8860 2.5203 0.0005 5 8 0.6997 2.7878 0.0064 6 7 2.8002 3.5106 -0.0053 7 6 4.2682 3.5965 -0.0064 8 6 4.1315 4.9556 -0.7124 9 6 2.7684 4.9809 -0.0065 10 1 2.8047 5.4168 0.9919 11 6 1.6470 5.5655 -0.8677 12 8 1.8787 5.2367 -2.2389 13 6 3.6591 0.6498 -0.0059 14 7 3.6340 -0.6545 -0.0044 15 7 2.3016 -1.0821 0.0024 16 6 1.8500 -2.4758 0.0050 17 6 1.7013 -2.9531 1.4267 18 1 1.9216 -2.2852 2.2463 19 6 1.2850 -4.2426 1.6810 20 7 1.0172 -5.0561 0.6829 21 14 1.1000 -4.8339 3.4433 22 1 -0.2811 -4.5596 3.9151 23 1 1.3635 -6.2940 3.5057 24 1 2.0705 -4.1184 4.3100 25 1 -0.3633 0.0029 1.0277 26 1 -0.3633 0.8887 -0.5162 27 1 -0.3633 -0.8913 -0.5115 28 1 4.6996 3.6675 0.9921 29 1 4.7473 2.8334 -0.6197 30 1 4.0712 4.8944 -1.7989 31 1 4.8304 5.7149 -0.3616 32 1 0.6908 5.1491 -0.5507 33 1 1.6276 6.6492 -0.7523 34 1 1.2053 5.5763 -2.8441 35 1 4.5450 1.2674 -0.0107 36 1 0.8891 -2.5473 -0.5047 37 1 2.5824 -3.0961 -0.5117 38 1 0.7246 -5.9635 0.8618 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334810233.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:36 Heat of formation + Delta-G solvation = 0.287741 kcal Electronic energy + Delta-G solvation = -21830.040847 eV Core-core repulsion = 18481.583161 eV Total energy + Delta-G solvation = -3348.457686 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.37841 -41.11039 -38.63500 -37.06734 -35.82651 -33.92893 -32.79207 -31.14318 -29.43701 -28.95611 -28.04279 -25.46966 -24.16757 -23.67708 -22.09508 -20.71472 -19.72414 -18.88690 -18.53623 -17.79887 -16.98501 -16.88240 -16.72223 -16.41727 -15.92625 -15.53769 -15.05876 -14.87983 -14.36420 -14.20036 -13.88978 -13.77136 -13.69179 -13.61980 -13.30019 -13.12750 -12.99138 -12.93349 -12.70652 -12.34832 -12.25965 -11.87878 -11.70501 -11.21848 -11.06556 -10.77420 -10.49327 -10.29667 -9.76925 -9.34497 -8.39333 -6.56149 0.66356 1.29436 1.36620 1.37263 1.47635 1.60294 2.02724 2.31514 2.54504 2.92577 3.31717 3.60155 3.62507 3.70954 4.01209 4.12763 4.16147 4.18384 4.37012 4.46675 4.50974 4.56076 4.61490 4.72027 4.74661 4.82086 4.89271 5.02162 5.07924 5.09625 5.24776 5.47215 5.51378 5.66430 5.72675 6.02186 6.52517 6.77901 6.83920 6.91021 7.14966 7.34266 8.68746 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.033063 B = 0.003943 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.672718 B = 7099.537795 C = 7304.345576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.142 3.858 3 C -0.327 4.327 4 C 0.628 3.372 5 O -0.587 6.587 6 N -0.644 5.644 7 C 0.085 3.915 8 C -0.121 4.121 9 C 0.120 3.880 10 H 0.125 0.875 11 C 0.068 3.932 12 O -0.583 6.583 13 C 0.073 3.927 14 N -0.335 5.335 15 N -0.337 5.337 16 C 0.267 3.733 17 C -0.557 4.557 18 H 0.051 0.949 19 C 0.024 3.976 20 N -0.917 5.917 21 Si 0.973 3.027 22 H -0.266 1.266 23 H -0.272 1.272 24 H -0.274 1.274 25 H 0.083 0.917 26 H 0.099 0.901 27 H 0.072 0.928 28 H 0.110 0.890 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.122 0.878 32 H 0.034 0.966 33 H 0.085 0.915 34 H 0.391 0.609 35 H 0.220 0.780 36 H 0.051 0.949 37 H 0.032 0.968 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.751 22.037 -2.112 22.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.006 3.994 3 C -0.342 4.342 4 C 0.421 3.579 5 O -0.469 6.469 6 N -0.379 5.379 7 C -0.037 4.037 8 C -0.159 4.159 9 C 0.018 3.982 10 H 0.143 0.857 11 C -0.011 4.011 12 O -0.390 6.390 13 C -0.113 4.113 14 N -0.155 5.155 15 N -0.114 5.114 16 C 0.148 3.852 17 C -0.595 4.595 18 H 0.069 0.931 19 C -0.177 4.177 20 N -0.554 5.554 21 Si 0.797 3.203 22 H -0.191 1.191 23 H -0.197 1.197 24 H -0.199 1.199 25 H 0.101 0.899 26 H 0.117 0.883 27 H 0.091 0.909 28 H 0.128 0.872 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.140 0.860 32 H 0.052 0.948 33 H 0.103 0.897 34 H 0.240 0.760 35 H 0.236 0.764 36 H 0.068 0.932 37 H 0.050 0.950 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.131 20.268 -1.918 20.995 hybrid contribution -1.236 -0.013 0.505 1.335 sum 3.895 20.255 -1.413 20.675 Atomic orbital electron populations 1.20520 0.85772 1.03911 1.03892 1.21949 0.95967 0.86666 0.94787 1.19976 0.93338 0.93040 1.27867 1.16622 0.83940 0.82866 0.74511 1.90629 1.17457 1.84408 1.54446 1.49446 1.08674 1.06685 1.73077 1.23469 0.79565 0.98377 1.02268 1.23330 0.94728 0.96793 1.01043 1.23200 0.96257 0.79012 0.99753 0.85717 1.22268 0.97318 0.99310 0.82165 1.86417 1.53685 1.81383 1.17525 1.24660 0.97772 0.91538 0.97344 1.77080 0.98402 1.14261 1.25793 1.49118 1.03320 1.07768 1.51218 1.19391 0.95281 0.72210 0.98276 1.21379 1.48126 0.98557 0.91434 0.93101 1.25743 0.93707 0.95827 1.02432 1.69997 1.44690 1.07613 1.33144 0.85324 0.78959 0.77688 0.78351 1.19086 1.19691 1.19857 0.89873 0.88291 0.90916 0.87195 0.90031 0.88966 0.85965 0.94778 0.89693 0.75989 0.76371 0.93168 0.95003 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.26 9.56 71.24 0.68 -2.57 16 2 C 0.14 6.27 7.01 42.14 0.30 6.57 16 3 C -0.33 -12.97 6.13 -20.15 -0.12 -13.09 16 4 C 0.63 22.73 7.97 86.67 0.69 23.42 16 5 O -0.59 -23.96 14.29 -4.05 -0.06 -24.02 16 6 N -0.64 -16.86 3.56 -837.05 -2.98 -19.85 16 7 C 0.09 1.42 7.14 83.27 0.59 2.02 16 8 C -0.12 -1.59 7.86 31.03 0.24 -1.35 16 9 C 0.12 2.16 4.58 41.80 0.19 2.35 16 10 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 11 C 0.07 1.27 7.05 71.98 0.51 1.78 16 12 O -0.58 -11.96 12.11 -148.98 -1.80 -13.76 16 13 C 0.07 2.70 11.14 85.65 0.95 3.65 16 14 N -0.34 -15.33 12.50 -56.28 -0.70 -16.03 16 15 N -0.34 -16.41 3.56 -336.68 -1.20 -17.60 16 16 C 0.27 14.25 5.97 85.63 0.51 14.76 16 17 C -0.56 -31.44 9.39 25.60 0.24 -31.20 16 18 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 19 C 0.02 1.33 5.46 84.65 0.46 1.80 16 20 N -0.92 -51.97 13.29 21.45 0.28 -51.69 16 21 Si 0.97 43.21 29.54 68.60 2.03 45.24 16 22 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 25 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 26 H 0.10 3.72 6.52 -2.39 -0.02 3.71 16 27 H 0.07 2.79 7.05 -2.39 -0.02 2.77 16 28 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.08 1.37 6.11 -2.39 -0.01 1.35 16 30 H 0.09 1.56 6.92 -2.39 -0.02 1.54 16 31 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.03 0.86 7.04 -2.39 -0.02 0.85 16 33 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.39 5.02 9.12 -74.06 -0.68 4.35 16 35 H 0.22 5.80 5.20 -2.91 -0.02 5.78 16 36 H 0.05 2.68 7.01 -2.39 -0.02 2.66 16 37 H 0.03 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -74.42 319.35 1.24 -73.18 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.42 Total: 16.39 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 5.25 Total: 8.14 kcal Atomic # 7 Polarization: -100.57 SS G_CDS: -4.60 Total: -105.17 kcal Atomic # 8 Polarization: -35.92 SS G_CDS: -1.86 Total: -37.78 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -74.42 1.24 -73.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334810233.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.470 kcal (2) G-P(sol) polarization free energy of solvation -74.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds