Wall clock time and date at job start Tue Mar 31 2020 02:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30857 * 125.41949 * 2 1 4 4 C 1.33323 * 109.68780 * 179.97438 * 3 2 1 5 5 C 1.36661 * 107.78464 * 359.97438 * 4 3 2 6 6 C 1.46766 * 126.84521 * 180.02562 * 5 4 3 7 7 O 1.21685 * 119.99681 * 185.69084 * 6 5 4 8 8 N 1.34770 * 119.99883 * 5.68737 * 6 5 4 9 9 C 1.47027 * 125.65040 * 355.29147 * 8 6 5 10 10 C 1.54320 * 107.26930 * 178.98945 * 9 8 6 11 11 C 1.55155 * 102.94379 * 337.80379 * 10 9 8 12 12 O 1.42893 * 111.00831 * 277.42880 * 11 10 9 13 13 C 1.50707 * 111.00458 * 153.61621 * 11 10 9 14 14 H 1.08001 * 119.99657 * 3.18615 * 13 11 10 15 15 C 1.37871 * 120.00143 * 183.18242 * 13 11 10 16 16 N 1.31512 * 120.00166 * 359.97438 * 15 13 11 17 17 Si 1.86806 * 120.00111 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.46980 * 89.99720 * 17 15 13 19 19 H 1.48491 * 109.47174 * 210.00209 * 17 15 13 20 20 H 1.48503 * 109.46921 * 330.00416 * 17 15 13 21 21 C 1.47428 * 125.64793 * 175.34557 * 8 6 5 22 22 N 1.34495 * 125.41846 * 180.31335 * 2 1 3 23 23 C 1.46494 * 126.47502 * 0.02562 * 22 2 1 24 24 H 1.09001 * 109.47232 * 89.97824 * 1 2 3 25 25 H 1.08998 * 109.47305 * 209.97582 * 1 2 3 26 26 H 1.09000 * 109.47157 * 329.98029 * 1 2 3 27 27 H 1.07994 * 126.10936 * 179.97438 * 4 3 2 28 28 H 1.09000 * 109.87997 * 59.56937 * 9 8 6 29 29 H 1.09000 * 109.88153 * 298.40408 * 9 8 6 30 30 H 1.09007 * 110.72007 * 219.44338 * 10 9 8 31 31 H 1.08994 * 110.87899 * 96.24530 * 10 9 8 32 32 H 0.96703 * 114.00496 * 180.02562 * 12 11 10 33 33 H 0.96997 * 120.00061 * 180.02562 * 16 15 13 34 34 H 1.09003 * 110.36549 * 85.24144 * 21 8 6 35 35 H 1.08999 * 110.36942 * 322.92497 * 21 8 6 36 36 H 1.09003 * 109.47708 * 274.96671 * 23 22 2 37 37 H 1.08998 * 109.47168 * 34.96723 * 23 22 2 38 38 H 1.09004 * 109.47524 * 154.96978 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0664 0.0000 4 6 3.5486 0.7049 0.0006 5 6 3.5976 -0.6608 0.0015 6 6 4.8029 -1.4983 0.0029 7 8 4.7042 -2.7067 -0.1008 8 7 6.0189 -0.9289 0.1190 9 6 6.2888 0.5160 0.1532 10 6 7.8125 0.6935 0.3214 11 6 8.2537 -0.6590 0.9405 12 8 8.0447 -0.6679 2.3540 13 6 9.6923 -0.9615 0.6082 14 1 10.2806 -0.2451 0.0541 15 6 10.2572 -2.1527 1.0116 16 7 9.5410 -3.0248 1.6868 17 14 12.0405 -2.5273 0.6004 18 1 12.9154 -2.0291 1.6920 19 1 12.2173 -3.9944 0.4549 20 1 12.4065 -1.8559 -0.6726 21 6 7.2988 -1.6517 0.2317 22 7 2.2864 -1.0960 -0.0060 23 6 1.8311 -2.4884 -0.0141 24 1 -0.3634 0.0004 -1.0277 25 1 -0.3634 -0.8902 0.5134 26 1 -0.3633 0.8898 0.5141 27 1 4.3978 1.3721 0.0003 28 1 5.7673 0.9707 0.9955 29 1 5.9627 0.9762 -0.7795 30 1 8.0322 1.5180 0.9998 31 1 8.2941 0.8513 -0.6436 32 1 8.3063 -1.4930 2.7852 33 1 9.9386 -3.8627 1.9710 34 1 7.6802 -1.9043 -0.7577 35 1 7.1741 -2.5527 0.8324 36 1 1.6332 -2.8121 1.0077 37 1 0.9180 -2.5687 -0.6039 38 1 2.6034 -3.1207 -0.4523 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335043393.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:12 Heat of formation + Delta-G solvation = -37.660387 kcal Electronic energy + Delta-G solvation = -22334.244571 eV Core-core repulsion = 18984.141331 eV Total energy + Delta-G solvation = -3350.103240 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.33874 -40.81975 -38.87863 -36.30639 -35.01569 -34.19986 -33.02963 -31.82911 -29.95773 -28.77734 -27.84560 -26.58769 -25.01773 -22.83311 -21.66438 -21.19598 -20.41336 -19.15896 -18.18043 -17.45697 -17.30992 -17.18378 -16.45184 -16.38974 -16.02933 -15.17500 -14.93072 -14.72481 -14.61493 -14.27390 -14.20335 -13.82813 -13.67943 -13.52848 -13.32409 -13.23091 -13.11162 -12.84416 -12.42532 -12.31707 -12.21313 -12.12180 -11.46522 -11.22156 -10.97534 -10.77105 -10.65888 -10.34964 -9.69596 -9.43368 -8.26495 -6.43763 0.22468 1.37317 1.43876 1.45410 1.54594 1.73598 2.19581 2.23911 2.39166 3.00015 3.36154 3.48775 3.75190 3.84537 3.93321 4.08510 4.19369 4.27888 4.29227 4.33634 4.57025 4.60751 4.69554 4.71553 4.73754 4.99949 5.04173 5.06757 5.10230 5.25790 5.36338 5.43472 5.45774 5.74815 6.02918 6.07460 6.50187 6.65555 6.80316 7.03188 7.28189 7.35270 8.79014 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.036741 B = 0.004419 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.916112 B = 6335.114406 C = 6786.840967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.231 3.769 3 N -0.522 5.522 4 C 0.033 3.967 5 C -0.109 4.109 6 C 0.592 3.408 7 O -0.595 6.595 8 N -0.599 5.599 9 C 0.097 3.903 10 C -0.113 4.113 11 C 0.232 3.768 12 O -0.589 6.589 13 C -0.556 4.556 14 H 0.073 0.927 15 C 0.026 3.974 16 N -0.918 5.918 17 Si 0.965 3.035 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.264 1.264 21 C 0.113 3.887 22 N -0.432 5.432 23 C 0.061 3.939 24 H 0.104 0.896 25 H 0.099 0.901 26 H 0.102 0.898 27 H 0.202 0.798 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.376 0.624 33 H 0.270 0.730 34 H 0.049 0.951 35 H 0.045 0.955 36 H 0.088 0.912 37 H 0.127 0.873 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.346 5.379 -4.008 16.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.031 4.031 3 N -0.242 5.242 4 C -0.121 4.121 5 C -0.225 4.225 6 C 0.382 3.618 7 O -0.479 6.479 8 N -0.329 5.329 9 C -0.024 4.024 10 C -0.150 4.150 11 C 0.192 3.808 12 O -0.397 6.397 13 C -0.594 4.594 14 H 0.091 0.909 15 C -0.174 4.174 16 N -0.558 5.558 17 Si 0.790 3.210 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.188 1.188 21 C -0.009 4.009 22 N -0.113 5.113 23 C -0.080 4.080 24 H 0.122 0.878 25 H 0.118 0.882 26 H 0.121 0.879 27 H 0.219 0.781 28 H 0.099 0.901 29 H 0.115 0.885 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.225 0.775 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.106 0.894 37 H 0.145 0.855 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.025 5.760 -4.116 17.519 hybrid contribution 1.847 -2.229 0.146 2.899 sum -14.178 3.531 -3.970 15.140 Atomic orbital electron populations 1.20522 0.80631 1.05934 1.05515 1.24454 0.97727 0.80373 1.00551 1.70172 1.02171 1.29136 1.22690 1.23574 0.96121 0.91444 1.00994 1.20538 0.85441 0.95230 1.21313 1.16814 0.82012 0.86122 0.76812 1.90697 1.86869 1.15839 1.54520 1.48380 1.05404 1.09498 1.69637 1.22560 0.97559 0.79893 1.02415 1.22678 0.93012 0.97584 1.01749 1.19869 0.91391 0.90905 0.78658 1.86079 1.88249 1.42928 1.22443 1.21829 0.96908 1.03584 1.37071 0.90934 1.25833 1.02330 0.95454 0.93818 1.69768 1.38136 1.09553 1.38309 0.85439 0.79528 0.77030 0.78960 1.20011 1.21248 1.18849 1.22896 0.81599 0.97001 0.99423 1.45285 1.04377 1.09584 1.52071 1.22459 1.03007 0.77442 1.05094 0.87788 0.88223 0.87907 0.78113 0.90146 0.88475 0.89190 0.88786 0.77481 0.92064 0.93285 0.93621 0.89351 0.85522 0.90116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.01 71.23 0.71 -0.13 16 2 C 0.23 5.69 7.88 138.20 1.09 6.78 16 3 N -0.52 -15.46 11.20 -187.40 -2.10 -17.56 16 4 C 0.03 1.02 10.37 84.10 0.87 1.89 16 5 C -0.11 -3.82 6.88 40.01 0.28 -3.55 16 6 C 0.59 25.10 7.81 86.47 0.68 25.78 16 7 O -0.60 -28.61 15.06 -4.30 -0.06 -28.68 16 8 N -0.60 -25.21 3.33 -816.39 -2.72 -27.93 16 9 C 0.10 3.27 5.00 86.73 0.43 3.70 16 10 C -0.11 -4.19 6.13 31.78 0.19 -4.00 16 11 C 0.23 11.15 0.89 -10.15 -0.01 11.14 16 12 O -0.59 -30.33 13.19 -148.98 -1.96 -32.29 16 13 C -0.56 -28.47 8.26 25.60 0.21 -28.26 16 14 H 0.07 3.57 7.78 -2.91 -0.02 3.54 16 15 C 0.03 1.36 5.27 84.65 0.45 1.81 16 16 N -0.92 -49.74 10.68 21.44 0.23 -49.51 16 17 Si 0.97 41.27 29.54 68.60 2.03 43.30 16 18 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 19 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 21 C 0.11 5.57 5.49 86.85 0.48 6.05 16 22 N -0.43 -12.28 3.17 -524.95 -1.67 -13.95 16 23 C 0.06 1.34 10.37 127.77 1.32 2.67 16 24 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.10 0.78 7.80 -2.39 -0.02 0.76 16 26 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.20 5.44 4.46 -2.91 -0.01 5.43 16 28 H 0.08 2.54 6.77 -2.39 -0.02 2.52 16 29 H 0.10 2.62 7.12 -2.39 -0.02 2.60 16 30 H 0.09 3.12 8.14 -2.38 -0.02 3.10 16 31 H 0.09 3.21 8.02 -2.39 -0.02 3.19 16 32 H 0.38 20.40 7.18 -74.05 -0.53 19.87 16 33 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 34 H 0.05 2.48 8.03 -2.39 -0.02 2.47 16 35 H 0.05 2.57 7.53 -2.39 -0.02 2.56 16 36 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.13 1.61 7.89 -2.39 -0.02 1.59 16 38 H 0.08 2.32 6.15 -2.39 -0.01 2.31 16 Total: -1.00 -69.38 311.45 1.01 -68.36 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: 0.56 Total: 34.39 kcal Atomic # 6 Polarization: 17.16 SS G_CDS: 6.70 Total: 23.87 kcal Atomic # 7 Polarization: -102.70 SS G_CDS: -6.25 Total: -108.95 kcal Atomic # 8 Polarization: -58.94 SS G_CDS: -2.03 Total: -60.97 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -69.38 1.01 -68.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335043393.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.703 kcal (2) G-P(sol) polarization free energy of solvation -69.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds