Wall clock time and date at job start Tue Mar 31 2020 02:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33280 * 126.10907 * 2 1 4 4 C 1.30881 * 109.69912 * 180.27899 * 3 2 1 5 5 N 1.34475 * 109.18247 * 359.72792 * 4 3 2 6 6 H 0.97006 * 126.47269 * 179.97438 * 5 4 3 7 7 C 1.36755 * 126.11240 * 179.81231 * 2 1 3 8 8 C 1.46583 * 126.85258 * 359.97438 * 7 2 1 9 9 O 1.21607 * 120.00393 * 359.71419 * 8 7 2 10 10 O 1.34875 * 119.99501 * 179.71202 * 8 7 2 11 11 C 1.45208 * 116.99982 * 180.02562 * 10 8 7 12 12 C 1.53039 * 109.45959 * 270.07170 * 11 10 8 13 13 C 1.53191 * 109.31281 * 178.61229 * 12 11 10 14 14 N 1.46934 * 108.77651 * 54.63448 * 13 12 11 15 15 C 1.36934 * 120.63120 * 126.41241 * 14 13 12 16 16 H 1.07999 * 120.00232 * 331.82469 * 15 14 13 17 17 C 1.38810 * 119.99884 * 151.82932 * 15 14 13 18 18 N 1.31622 * 119.99791 * 343.07082 * 17 15 14 19 19 Si 1.86800 * 120.00151 * 163.06941 * 17 15 14 20 20 H 1.48497 * 109.46872 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47235 * 119.99807 * 19 17 15 22 22 H 1.48504 * 109.46936 * 240.00134 * 19 17 15 23 23 C 1.46923 * 118.73317 * 306.39057 * 14 13 12 24 24 C 1.53035 * 109.45993 * 150.00276 * 11 10 8 25 25 H 1.09007 * 109.47053 * 270.19087 * 1 2 3 26 26 H 1.09001 * 109.47161 * 30.18690 * 1 2 3 27 27 H 1.09001 * 109.47170 * 150.19056 * 1 2 3 28 28 H 1.07992 * 125.40872 * 179.70383 * 4 3 2 29 29 H 1.09006 * 109.44679 * 30.03138 * 11 10 8 30 30 H 1.09001 * 109.49425 * 298.56153 * 12 11 10 31 31 H 1.08998 * 109.49930 * 58.65833 * 12 11 10 32 32 H 1.08999 * 109.58705 * 294.84672 * 13 12 11 33 33 H 1.09001 * 109.70601 * 174.49112 * 13 12 11 34 34 H 0.96999 * 119.99934 * 180.02562 * 18 17 15 35 35 H 1.08993 * 109.59317 * 293.81853 * 23 14 13 36 36 H 1.09006 * 109.70368 * 173.46391 * 23 14 13 37 37 H 1.09000 * 109.49885 * 301.33184 * 24 11 10 38 38 H 1.08997 * 109.50316 * 61.40193 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2925 1.0768 0.0000 4 6 3.5480 0.7070 -0.0060 5 7 3.6130 -0.6361 -0.0041 6 1 4.4201 -1.1744 -0.0078 7 6 2.3130 -1.1048 0.0036 8 6 1.8836 -2.5063 0.0087 9 8 0.6986 -2.7792 0.0154 10 8 2.8029 -3.4932 0.0060 11 6 2.3056 -4.8574 0.0108 12 6 2.1362 -5.3333 1.4555 13 6 1.5787 -6.7601 1.4569 14 7 2.4550 -7.6110 0.6400 15 6 2.9795 -8.7675 1.1524 16 1 3.1542 -8.8572 2.2144 17 6 3.2868 -9.8245 0.3067 18 7 2.7832 -9.8628 -0.9087 19 14 4.4152 -11.1926 0.8937 20 1 4.8450 -10.9158 2.2879 21 1 3.6894 -12.4873 0.8468 22 1 5.6088 -11.2620 0.0128 23 6 2.7571 -7.1976 -0.7370 24 6 3.3015 -5.7657 -0.7138 25 1 -0.3633 0.0034 1.0277 26 1 -0.3633 0.8883 -0.5167 27 1 -0.3633 -0.8917 -0.5109 28 1 4.3968 1.3746 -0.0120 29 1 1.3427 -4.8945 -0.4989 30 1 3.1031 -5.3200 1.9585 31 1 1.4448 -4.6720 1.9777 32 1 0.5734 -6.7601 1.0357 33 1 1.5472 -7.1414 2.4775 34 1 2.9976 -10.6016 -1.4995 35 1 1.8480 -7.2332 -1.3372 36 1 3.5043 -7.8655 -1.1658 37 1 3.4393 -5.4124 -1.7357 38 1 4.2575 -5.7479 -0.1907 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343664029.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:27 Heat of formation + Delta-G solvation = -15.145045 kcal Electronic energy + Delta-G solvation = -21760.056926 eV Core-core repulsion = 18410.930024 eV Total energy + Delta-G solvation = -3349.126902 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.45762 -40.09001 -37.49026 -35.91359 -33.51524 -32.74271 -31.42980 -30.41888 -29.69622 -27.63205 -25.34836 -23.74245 -22.43975 -22.20127 -21.32269 -19.93150 -19.40072 -18.76654 -17.10066 -16.83653 -16.16904 -15.83757 -15.07095 -14.90307 -14.74945 -14.07637 -13.63937 -13.39071 -13.18642 -13.08962 -12.94270 -12.83376 -12.54124 -12.31264 -11.59925 -11.32318 -11.14370 -10.84519 -10.80295 -10.74296 -10.48249 -10.30198 -10.25242 -10.21803 -9.95577 -9.71648 -9.53049 -8.81488 -8.55177 -6.78631 -5.87054 -3.29918 0.95561 2.52084 2.53600 2.91176 2.99799 3.32983 3.41103 3.43353 4.16459 4.43366 4.61805 4.87477 4.98464 5.18120 5.29664 5.34375 5.44027 5.49667 5.63819 5.65572 5.75024 5.87277 5.92948 6.15636 6.20121 6.34989 6.35642 6.42690 6.50364 6.66824 6.74627 6.88514 6.94199 7.21179 7.51421 7.57646 7.73229 7.83730 8.36301 9.12352 9.74943 10.31451 11.22215 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.041754 B = 0.003533 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.431904 B = 7923.335530 C = 8163.361695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.104 3.896 3 N -0.501 5.501 4 C 0.224 3.776 5 N -0.543 5.543 6 H 0.431 0.569 7 C -0.074 4.074 8 C 0.537 3.463 9 O -0.493 6.493 10 O -0.362 6.362 11 C 0.101 3.899 12 C -0.146 4.146 13 C 0.149 3.851 14 N -0.593 5.593 15 C -0.255 4.255 16 H 0.068 0.932 17 C 0.003 3.997 18 N -0.903 5.903 19 Si 0.904 3.096 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.288 1.288 23 C 0.174 3.826 24 C -0.135 4.135 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.218 0.782 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.023 0.977 33 H 0.061 0.939 34 H 0.255 0.745 35 H 0.023 0.977 36 H 0.097 0.903 37 H 0.057 0.943 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.140 18.445 0.706 18.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.031 4.031 3 N -0.222 5.222 4 C -0.060 4.060 5 N -0.147 5.147 6 H 0.271 0.729 7 C -0.188 4.188 8 C 0.381 3.619 9 O -0.381 6.381 10 O -0.279 6.279 11 C 0.048 3.952 12 C -0.186 4.186 13 C 0.022 3.978 14 N -0.315 5.315 15 C -0.384 4.384 16 H 0.086 0.914 17 C -0.196 4.196 18 N -0.547 5.547 19 Si 0.734 3.266 20 H -0.202 1.202 21 H -0.216 1.216 22 H -0.215 1.215 23 C 0.048 3.952 24 C -0.175 4.175 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.108 0.892 28 H 0.235 0.765 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.041 0.959 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.041 0.959 36 H 0.115 0.885 37 H 0.076 0.924 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.516 18.929 0.601 18.999 hybrid contribution 1.412 -1.754 0.222 2.262 sum 2.928 17.175 0.823 17.442 Atomic orbital electron populations 1.20351 0.86227 1.03914 1.03342 1.21143 0.97029 0.86330 0.98589 1.70182 1.00489 1.30130 1.21363 1.25198 0.97452 0.82119 1.01269 1.43341 1.08400 1.08677 1.54307 0.72888 1.20040 0.84934 0.92265 1.21573 1.19496 0.84596 0.84346 0.73498 1.90869 1.17445 1.83472 1.46268 1.86609 1.39872 1.17906 1.83504 1.23008 0.99150 0.74737 0.98313 1.22473 1.01817 0.99564 0.94706 1.20867 0.92680 0.88053 0.96217 1.44130 1.53436 1.23097 1.10864 1.19238 1.35542 0.90524 0.93146 0.91445 1.25075 1.00329 0.97158 0.97007 1.70025 1.44417 1.32219 1.08022 0.86202 0.80469 0.81765 0.78204 1.20204 1.21635 1.21499 1.20810 0.99182 0.88855 0.86362 1.22479 0.98693 0.97710 0.98580 0.90425 0.90745 0.89192 0.76535 0.90012 0.91457 0.92520 0.95908 0.92007 0.93534 0.95879 0.88510 0.92406 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 9.88 36.01 0.36 -0.56 16 2 C 0.10 1.34 7.15 -82.50 -0.59 0.75 16 3 N -0.50 -5.96 11.20 -10.63 -0.12 -6.07 16 4 C 0.22 1.87 13.00 -90.57 -1.18 0.69 16 5 N -0.54 -5.07 6.19 -10.81 -0.07 -5.13 16 6 H 0.43 2.95 8.96 -40.82 -0.37 2.59 16 7 C -0.07 -0.97 7.13 -82.17 -0.59 -1.56 16 8 C 0.54 8.37 7.91 34.10 0.27 8.64 16 9 O -0.49 -8.64 14.09 -19.35 -0.27 -8.91 16 10 O -0.36 -5.81 9.89 -40.97 -0.41 -6.21 16 11 C 0.10 1.83 2.42 -26.69 -0.06 1.76 16 12 C -0.15 -2.67 5.72 -26.61 -0.15 -2.82 16 13 C 0.15 3.13 6.52 -3.71 -0.02 3.11 16 14 N -0.59 -14.65 2.99 -172.31 -0.52 -15.17 16 15 C -0.26 -6.88 9.58 -15.06 -0.14 -7.02 16 16 H 0.07 1.79 7.88 -52.49 -0.41 1.37 16 17 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 18 N -0.90 -25.66 11.19 55.49 0.62 -25.04 16 19 Si 0.90 21.25 29.59 -169.99 -5.03 16.22 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 C 0.17 4.05 5.30 -3.71 -0.02 4.04 16 24 C -0.14 -2.56 5.74 -26.61 -0.15 -2.71 16 25 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.09 1.11 6.49 -51.93 -0.34 0.77 16 28 H 0.22 0.72 8.06 -52.49 -0.42 0.30 16 29 H 0.08 1.57 7.16 -51.93 -0.37 1.20 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 1.26 7.93 -51.93 -0.41 0.85 16 34 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 2.50 6.07 -51.93 -0.31 2.18 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 317.73 15.07 4.79 4.79 Total: -1.00 -31.93 317.73 -8.53 -40.46 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.16 Total: 0.76 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -2.37 Total: 4.32 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: -0.08 Total: -51.42 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.68 Total: -15.12 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.93 -8.53 -40.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343664029.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.316 kcal (2) G-P(sol) polarization free energy of solvation -31.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds