Wall clock time and date at job start Tue Mar 31 2020 00:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40415 * 107.86655 * 179.84998 * 3 2 1 5 5 N 1.40160 * 125.97629 * 180.16795 * 4 3 2 6 6 C 1.34774 * 119.99582 * 0.31868 * 5 4 3 7 7 O 1.21287 * 120.00652 * 0.02562 * 6 5 4 8 8 C 1.50709 * 119.99641 * 179.97438 * 6 5 4 9 9 C 1.53006 * 109.46856 * 180.02562 * 8 6 5 10 10 C 1.54035 * 113.81638 * 273.50812 * 9 8 6 11 11 O 1.44445 * 85.42372 * 223.23863 * 10 9 8 12 12 C 1.44177 * 93.38195 * 24.08800 * 11 10 9 13 13 N 1.31221 * 108.05031 * 0.41656 * 4 3 2 14 14 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 15 15 C 1.46500 * 125.97897 * 359.96594 * 14 2 1 16 16 C 1.50698 * 109.46965 * 89.99833 * 15 14 2 17 17 H 1.08000 * 120.00464 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99358 * 180.02562 * 16 15 14 19 19 N 1.31506 * 120.00418 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99496 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47105 * 90.00179 * 20 18 16 22 22 H 1.48499 * 109.46684 * 210.00001 * 20 18 16 23 23 H 1.48496 * 109.47247 * 330.00058 * 20 18 16 24 24 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 27 27 H 1.08000 * 126.06978 * 359.96350 * 3 2 1 28 28 H 0.96997 * 120.00211 * 180.31836 * 5 4 3 29 29 H 1.08995 * 109.46887 * 299.99916 * 8 6 5 30 30 H 1.08992 * 109.46796 * 60.00190 * 8 6 5 31 31 H 1.09000 * 112.99905 * 45.33760 * 9 8 6 32 32 H 1.08997 * 113.86164 * 337.34528 * 10 9 8 33 33 H 1.08999 * 113.86536 * 109.05074 * 10 9 8 34 34 H 1.08999 * 113.86618 * 221.77022 * 12 11 10 35 35 H 1.08998 * 113.98395 * 90.07504 * 12 11 10 36 36 H 1.08994 * 109.46840 * 210.00162 * 15 14 2 37 37 H 1.09004 * 109.46443 * 329.99889 * 15 14 2 38 38 H 0.96998 * 120.00265 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0035 5 7 4.7735 1.4748 0.0080 6 6 4.6367 2.8156 0.0157 7 8 3.5302 3.3124 0.0193 8 6 5.8587 3.6977 0.0211 9 6 5.4278 5.1658 0.0302 10 6 5.1699 5.7470 -1.3728 11 8 5.8885 6.9066 -0.8980 12 6 6.6032 6.1585 0.1061 13 7 3.6337 -0.6577 -0.0036 14 7 2.3016 -1.0910 -0.0059 15 6 1.8500 -2.4847 -0.0128 16 6 1.6945 -2.9553 -1.4359 17 1 1.9108 -2.2836 -2.2535 18 6 1.2760 -4.2434 -1.6941 19 7 1.0121 -5.0611 -0.6985 20 14 1.0838 -4.8270 -3.4582 21 1 2.3645 -5.4139 -3.9277 22 1 0.0141 -5.8548 -3.5257 23 1 0.7200 -3.6763 -4.3235 24 1 -0.3633 -0.0056 1.0277 25 1 -0.3633 -0.8872 -0.5186 26 1 -0.3633 0.8928 -0.5090 27 1 1.9719 2.1210 -0.0006 28 1 5.6584 1.0776 0.0055 29 1 6.4538 3.4885 0.9100 30 1 6.4541 3.4989 -0.8699 31 1 4.6312 5.3714 0.7451 32 1 5.6789 5.2098 -2.1730 33 1 4.1176 5.9353 -1.5855 34 1 6.6852 6.6724 1.0638 35 1 7.5513 5.7465 -0.2395 36 1 2.5849 -3.1072 0.4976 37 1 0.8916 -2.5584 0.5012 38 1 0.7173 -5.9671 -0.8802 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350590736.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:53 Heat of formation + Delta-G solvation = 1.594485 kcal Electronic energy + Delta-G solvation = -21085.688828 eV Core-core repulsion = 17737.287806 eV Total energy + Delta-G solvation = -3348.401022 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.31435 -41.43893 -40.21875 -36.32383 -35.29561 -33.56504 -32.85043 -32.54160 -28.86203 -27.90070 -27.50453 -27.36586 -24.94757 -22.89158 -21.26913 -21.01076 -20.63221 -18.81462 -18.00288 -17.72806 -17.29900 -17.15474 -16.72482 -16.39807 -16.29976 -16.04521 -15.65837 -15.00204 -14.65082 -14.37456 -13.93029 -13.81563 -13.59855 -13.54714 -13.42817 -13.15035 -12.84501 -12.69957 -12.66187 -12.26501 -12.08791 -11.86065 -11.53965 -11.52669 -11.33613 -10.82754 -10.74106 -10.58620 -9.58422 -9.13688 -8.33804 -6.51814 0.92923 1.35123 1.37626 1.40064 1.45580 1.51109 2.22929 2.28953 2.41480 2.80107 2.95863 3.28631 3.68133 3.78761 3.94465 4.15747 4.28052 4.41151 4.47548 4.49170 4.64328 4.65741 4.74647 4.79589 4.81200 4.86514 4.98692 5.00910 5.11243 5.13994 5.23882 5.26647 5.32043 5.52571 5.79926 5.96264 6.25189 6.31501 6.61056 7.00843 7.17462 7.19444 8.72135 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.032492 B = 0.003193 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.540122 B = 8766.526928 C = 8937.402010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.085 3.915 3 C -0.300 4.300 4 C 0.271 3.729 5 N -0.626 5.626 6 C 0.515 3.485 7 O -0.550 6.550 8 C -0.121 4.121 9 C -0.137 4.137 10 C 0.034 3.966 11 O -0.415 6.415 12 C 0.045 3.955 13 N -0.359 5.359 14 N -0.344 5.344 15 C 0.276 3.724 16 C -0.554 4.554 17 H 0.049 0.951 18 C 0.023 3.977 19 N -0.918 5.918 20 Si 0.971 3.029 21 H -0.274 1.274 22 H -0.271 1.271 23 H -0.270 1.270 24 H 0.092 0.908 25 H 0.066 0.934 26 H 0.101 0.899 27 H 0.166 0.834 28 H 0.426 0.574 29 H 0.137 0.863 30 H 0.131 0.869 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.024 0.976 37 H 0.051 0.949 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.671 17.605 1.922 20.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.045 4.045 3 C -0.330 4.330 4 C 0.017 3.983 5 N -0.276 5.276 6 C 0.304 3.696 7 O -0.426 6.426 8 C -0.160 4.160 9 C -0.156 4.156 10 C -0.042 4.042 11 O -0.335 6.335 12 C -0.031 4.031 13 N -0.190 5.190 14 N -0.126 5.126 15 C 0.157 3.843 16 C -0.592 4.592 17 H 0.067 0.933 18 C -0.178 4.178 19 N -0.556 5.556 20 Si 0.795 3.205 21 H -0.199 1.199 22 H -0.195 1.195 23 H -0.194 1.194 24 H 0.111 0.889 25 H 0.085 0.915 26 H 0.120 0.880 27 H 0.184 0.816 28 H 0.264 0.736 29 H 0.155 0.845 30 H 0.149 0.851 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.098 0.902 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.042 0.958 37 H 0.069 0.931 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.526 16.911 1.906 19.502 hybrid contribution -0.345 -0.543 -0.640 0.908 sum 9.181 16.368 1.265 18.809 Atomic orbital electron populations 1.20497 0.85515 1.04326 1.04064 1.21758 0.96646 0.86576 0.99521 1.21437 0.90088 0.99804 1.21704 1.19429 0.89125 0.89240 1.00533 1.42784 1.06763 1.05403 1.72639 1.21698 0.92798 0.80821 0.74244 1.90634 1.28946 1.74162 1.48858 1.21838 0.93997 0.91921 1.08266 1.24095 0.99545 0.93535 0.98423 1.24197 0.98013 0.85296 0.96739 1.89703 1.59921 1.29928 1.53915 1.24239 0.95415 0.90268 0.93185 1.77168 0.99989 1.10176 1.31671 1.48783 1.01841 1.07474 1.54540 1.19230 0.94859 0.72475 0.97761 1.21439 1.47590 0.98406 0.91760 0.93251 1.25736 0.93908 0.95885 1.02283 1.69995 1.45028 1.07453 1.33154 0.85353 0.78300 0.78198 0.78633 1.19923 1.19530 1.19416 0.88930 0.91486 0.88007 0.81626 0.73582 0.84466 0.85126 0.88620 0.88503 0.90219 0.87842 0.87330 0.95759 0.93146 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.88 9.89 71.24 0.70 -2.17 16 2 C 0.09 3.59 6.92 41.38 0.29 3.88 16 3 C -0.30 -12.06 9.52 22.11 0.21 -11.85 16 4 C 0.27 10.67 8.11 133.33 1.08 11.75 16 5 N -0.63 -17.04 5.45 -307.50 -1.68 -18.71 16 6 C 0.52 12.17 7.80 87.66 0.68 12.85 16 7 O -0.55 -17.31 12.92 -3.05 -0.04 -17.35 16 8 C -0.12 -1.39 5.55 29.85 0.17 -1.22 16 9 C -0.14 -2.00 3.35 -10.09 -0.03 -2.03 16 10 C 0.03 0.59 8.79 72.30 0.64 1.23 16 11 O -0.42 -8.30 12.46 -148.98 -1.86 -10.16 16 12 C 0.04 0.51 8.79 72.30 0.64 1.15 16 13 N -0.36 -16.65 12.59 -54.44 -0.69 -17.33 16 14 N -0.34 -16.62 3.59 -338.45 -1.22 -17.83 16 15 C 0.28 14.58 5.81 85.63 0.50 15.08 16 16 C -0.55 -31.01 9.39 25.60 0.24 -30.77 16 17 H 0.05 2.86 7.81 -2.91 -0.02 2.83 16 18 C 0.02 1.25 5.46 84.66 0.46 1.71 16 19 N -0.92 -51.73 13.29 21.45 0.28 -51.45 16 20 Si 0.97 42.84 29.54 68.60 2.03 44.87 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 24 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 25 H 0.07 2.46 7.71 -2.39 -0.02 2.44 16 26 H 0.10 2.83 8.14 -2.38 -0.02 2.81 16 27 H 0.17 6.41 5.92 -2.91 -0.02 6.39 16 28 H 0.43 8.64 8.82 -92.71 -0.82 7.82 16 29 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.13 0.84 7.88 -2.39 -0.02 0.82 16 31 H 0.10 1.78 7.74 -2.39 -0.02 1.77 16 32 H 0.10 1.33 7.92 -2.39 -0.02 1.31 16 33 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.11 0.66 8.10 -2.39 -0.02 0.64 16 36 H 0.02 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.05 2.65 7.65 -2.39 -0.02 2.63 16 38 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -73.50 327.23 2.67 -70.83 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.26 Total: 17.53 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: 5.57 Total: -0.40 kcal Atomic # 7 Polarization: -102.03 SS G_CDS: -3.29 Total: -105.33 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -1.90 Total: -27.51 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -73.50 2.67 -70.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350590736.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.424 kcal (2) G-P(sol) polarization free energy of solvation -73.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds