Wall clock time and date at job start Tue Mar 31 2020 00:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 120.00039 * 2 1 4 4 H 1.08994 * 109.47462 * 0.02562 * 3 2 1 5 5 C 1.52995 * 109.47454 * 240.00265 * 3 2 1 6 6 O 1.42904 * 109.47115 * 305.00326 * 5 3 2 7 7 N 1.46498 * 109.47102 * 120.00345 * 3 2 1 8 8 C 1.34777 * 120.00147 * 205.00131 * 7 3 2 9 9 O 1.21603 * 120.00160 * 0.02562 * 8 7 3 10 10 C 1.47429 * 120.00013 * 179.97438 * 8 7 3 11 11 C 1.41293 * 126.41485 * 0.02562 * 10 8 7 12 12 N 1.30448 * 108.02361 * 179.71995 * 11 10 8 13 13 N 1.39944 * 108.89724 * 0.40720 * 12 11 10 14 14 C 1.46491 * 125.75406 * 179.85047 * 13 12 11 15 15 C 1.50702 * 109.46957 * 269.68786 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72213 * 15 14 13 18 18 N 1.31514 * 119.99985 * 180.27663 * 17 15 14 19 19 Si 1.86800 * 119.99777 * 0.28166 * 17 15 14 20 20 H 1.48498 * 109.47109 * 89.99834 * 19 17 15 21 21 H 1.48507 * 109.46754 * 209.99574 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99405 * 19 17 15 23 23 C 1.34263 * 108.48668 * 359.58371 * 13 12 11 24 24 C 1.50694 * 126.28514 * 180.26484 * 23 13 12 25 25 H 1.07995 * 120.00423 * 180.02562 * 1 2 3 26 26 H 1.08003 * 119.99675 * 359.97438 * 1 2 3 27 27 H 1.07997 * 119.99711 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47298 * 64.99962 * 5 3 2 29 29 H 1.09005 * 109.47565 * 185.00279 * 5 3 2 30 30 H 0.96696 * 114.00554 * 179.97438 * 6 5 3 31 31 H 0.97008 * 120.00191 * 24.99432 * 7 3 2 32 32 H 1.07999 * 125.98923 * 359.95357 * 11 10 8 33 33 H 1.09004 * 109.47166 * 149.69052 * 14 13 12 34 34 H 1.08994 * 109.47507 * 29.68759 * 14 13 12 35 35 H 0.96996 * 119.99730 * 180.02562 * 18 17 15 36 36 H 1.08999 * 109.47548 * 90.00002 * 24 23 13 37 37 H 1.09005 * 109.47060 * 210.00231 * 24 23 13 38 38 H 1.08998 * 109.47841 * 329.99761 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3553 2.1336 0.0005 5 6 2.9431 1.3862 -1.2492 6 8 3.7919 0.2382 -1.3095 7 7 2.9058 1.3826 1.1961 8 6 3.2693 2.5838 1.6877 9 8 2.8977 3.6032 1.1386 10 6 4.1165 2.6618 2.8917 11 6 4.6220 1.5708 3.6337 12 7 5.3298 2.0472 4.6205 13 7 5.3036 3.4453 4.5636 14 6 5.9744 4.3527 5.4976 15 6 5.0422 4.6817 6.6352 16 1 4.0496 4.2569 6.6601 17 6 5.4589 5.5200 7.6475 18 7 4.6474 5.8028 8.6430 19 14 7.1760 6.2543 7.6048 20 1 7.1420 7.5510 6.8819 21 1 7.6551 6.4739 8.9932 22 1 8.0960 5.3216 6.9055 23 6 4.5648 3.8144 3.5050 24 6 4.2781 5.2274 3.0667 25 1 -0.5400 -0.9352 0.0004 26 1 -0.5400 0.9354 0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 2.3114 1.4180 -2.1369 29 1 3.5541 2.2879 -1.2055 30 1 4.3784 0.2225 -2.0781 31 1 3.2019 0.5695 1.6345 32 1 4.4552 0.5256 3.4191 33 1 6.2510 5.2700 4.9777 34 1 6.8710 3.8729 5.8898 35 1 4.9404 6.3928 9.3549 36 1 5.0495 5.5553 2.3699 37 1 3.3054 5.2654 2.5762 38 1 4.2719 5.8837 3.9369 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353864384.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:35 Heat of formation + Delta-G solvation = -23.180572 kcal Electronic energy + Delta-G solvation = -21384.711864 eV Core-core repulsion = 18035.236515 eV Total energy + Delta-G solvation = -3349.475349 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -42.34806 -40.41604 -38.14754 -36.02330 -35.76585 -34.16172 -33.48513 -32.81582 -30.13978 -29.10012 -28.03392 -25.13607 -24.29914 -22.99092 -21.28800 -21.10077 -20.22885 -19.28574 -18.44585 -18.24952 -17.31568 -16.73530 -16.50417 -16.20180 -15.87364 -15.52781 -15.20962 -15.15416 -14.68845 -14.42318 -14.13847 -13.98236 -13.75107 -13.68473 -13.39739 -13.13636 -13.00294 -12.86055 -12.57547 -12.15625 -11.90618 -11.85576 -11.75161 -11.08039 -10.92246 -10.75053 -10.40397 -10.26508 -10.06669 -9.44415 -8.43587 -6.55905 0.65111 1.20327 1.31966 1.33993 1.35473 1.45593 1.65216 2.24475 2.50008 2.54304 2.88732 3.43047 3.70018 3.72268 3.82447 4.10997 4.14653 4.18631 4.35095 4.47100 4.49908 4.56843 4.65610 4.69025 4.72691 4.83087 5.04048 5.07732 5.14503 5.17439 5.50134 5.62213 5.69794 5.83218 5.84152 6.20697 6.47226 6.63302 6.79623 6.91097 7.08132 7.35254 8.72941 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.033422 B = 0.003627 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.581169 B = 7718.745650 C = 7800.238500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.165 4.165 3 C 0.173 3.827 4 H 0.090 0.910 5 C 0.073 3.927 6 O -0.577 6.577 7 N -0.704 5.704 8 C 0.605 3.395 9 O -0.583 6.583 10 C -0.331 4.331 11 C 0.080 3.920 12 N -0.334 5.334 13 N -0.338 5.338 14 C 0.234 3.766 15 C -0.555 4.555 16 H 0.025 0.975 17 C 0.023 3.977 18 N -0.935 5.935 19 Si 0.950 3.050 20 H -0.251 1.251 21 H -0.277 1.277 22 H -0.243 1.243 23 C 0.148 3.852 24 C -0.093 4.093 25 H 0.120 0.880 26 H 0.098 0.902 27 H 0.125 0.875 28 H 0.072 0.928 29 H 0.036 0.964 30 H 0.394 0.606 31 H 0.410 0.590 32 H 0.223 0.777 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.275 0.725 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.935 -9.691 -20.913 23.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.184 4.184 3 C 0.069 3.931 4 H 0.108 0.892 5 C -0.006 4.006 6 O -0.385 6.385 7 N -0.355 5.355 8 C 0.395 3.605 9 O -0.465 6.465 10 C -0.346 4.346 11 C -0.107 4.107 12 N -0.153 5.153 13 N -0.115 5.115 14 C 0.114 3.886 15 C -0.593 4.593 16 H 0.044 0.956 17 C -0.177 4.177 18 N -0.573 5.573 19 Si 0.771 3.229 20 H -0.176 1.176 21 H -0.202 1.202 22 H -0.166 1.166 23 C 0.013 3.987 24 C -0.151 4.151 25 H 0.138 0.862 26 H 0.116 0.884 27 H 0.143 0.857 28 H 0.090 0.910 29 H 0.054 0.946 30 H 0.244 0.756 31 H 0.246 0.754 32 H 0.239 0.761 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.720 -9.241 -19.440 21.593 hybrid contribution 0.264 0.381 -0.221 0.513 sum -1.456 -8.860 -19.662 21.615 Atomic orbital electron populations 1.24153 0.95539 1.03134 0.97414 1.22814 0.95925 0.97279 1.02333 1.20234 0.91489 0.97491 0.83867 0.89215 1.22480 0.92826 0.87896 0.97371 1.86409 1.56197 1.43918 1.51997 1.45582 1.52640 1.07703 1.29535 1.17136 0.78111 0.83477 0.81801 1.90665 1.58103 1.35667 1.62038 1.19984 1.16685 0.92473 1.05443 1.24473 0.94354 1.00746 0.91109 1.77088 1.25639 0.88839 1.23727 1.48770 1.37368 1.04875 1.20515 1.19894 0.93166 0.88163 0.87370 1.21196 1.00231 1.30548 1.07290 0.95632 1.25831 1.02579 0.95610 0.93685 1.70025 1.38800 1.36620 1.11837 0.85688 0.78212 0.80148 0.78871 1.17552 1.20237 1.16611 1.21996 0.90975 0.98334 0.87415 1.20634 1.04687 0.87773 1.01973 0.86169 0.88372 0.85722 0.90962 0.94581 0.75631 0.75360 0.76070 0.91102 0.92571 0.91618 0.88162 0.88529 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 14.32 67.78 0.97 -1.32 16 2 C -0.17 -2.67 8.52 25.65 0.22 -2.45 16 3 C 0.17 3.55 2.73 44.24 0.12 3.67 16 4 H 0.09 2.06 7.22 -2.39 -0.02 2.05 16 5 C 0.07 1.31 6.84 71.98 0.49 1.80 16 6 O -0.58 -9.35 13.01 -148.98 -1.94 -11.29 16 7 N -0.70 -16.95 5.01 -449.39 -2.25 -19.20 16 8 C 0.61 19.51 7.78 86.66 0.67 20.19 16 9 O -0.58 -21.38 14.50 -4.04 -0.06 -21.44 16 10 C -0.33 -11.89 6.13 -20.15 -0.12 -12.02 16 11 C 0.08 2.71 11.50 85.65 0.99 3.70 16 12 N -0.33 -14.24 12.50 -56.27 -0.70 -14.94 16 13 N -0.34 -15.19 3.56 -336.72 -1.20 -16.39 16 14 C 0.23 10.96 4.85 85.64 0.42 11.37 16 15 C -0.55 -31.56 9.94 25.60 0.25 -31.31 16 16 H 0.03 1.69 8.06 -2.91 -0.02 1.66 16 17 C 0.02 1.29 5.47 84.66 0.46 1.76 16 18 N -0.93 -56.62 13.96 21.45 0.30 -56.32 16 19 Si 0.95 40.44 27.47 68.60 1.88 42.32 16 20 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 21 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 22 H -0.24 -9.48 6.54 99.48 0.65 -8.83 16 23 C 0.15 6.00 7.01 42.14 0.30 6.29 16 24 C -0.09 -3.28 9.34 71.23 0.67 -2.62 16 25 H 0.12 1.25 8.06 -2.91 -0.02 1.22 16 26 H 0.10 1.38 7.83 -2.91 -0.02 1.35 16 27 H 0.12 1.89 7.95 -2.91 -0.02 1.87 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.39 3.17 9.12 -74.06 -0.68 2.50 16 31 H 0.41 8.28 7.55 -92.70 -0.70 7.58 16 32 H 0.22 5.06 7.50 -2.91 -0.02 5.04 16 33 H 0.07 2.96 7.05 -2.38 -0.02 2.95 16 34 H 0.06 2.60 7.19 -2.39 -0.02 2.58 16 35 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 36 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 37 H 0.10 3.44 6.50 -2.38 -0.02 3.42 16 38 H 0.07 2.67 7.70 -2.39 -0.02 2.65 16 Total: -1.00 -74.23 329.66 1.13 -73.10 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: -0.34 Total: 25.08 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 5.43 Total: -0.93 kcal Atomic # 7 Polarization: -103.00 SS G_CDS: -3.85 Total: -106.85 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -2.00 Total: -32.73 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 1.88 Total: 42.32 kcal Total: -74.23 1.13 -73.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353864384.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.924 kcal (2) G-P(sol) polarization free energy of solvation -74.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds