Wall clock time and date at job start Tue Mar 31 2020 02:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30256 * 125.61750 * 2 1 4 4 C 1.34483 * 108.70214 * 179.73443 * 3 2 1 5 5 C 1.34328 * 107.66607 * 0.39340 * 4 3 2 6 6 C 1.50699 * 126.44367 * 179.87910 * 5 4 3 7 7 N 1.46497 * 109.47293 * 89.71147 * 6 5 4 8 8 C 1.34780 * 119.99719 * 179.97438 * 7 6 5 9 9 O 1.21578 * 120.00108 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99704 * 179.97438 * 8 7 6 11 11 C 1.46498 * 119.99966 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.46847 * 184.79711 * 11 10 8 13 13 C 1.50694 * 115.55031 * 294.81434 * 12 11 10 14 14 H 1.08008 * 119.99906 * 95.20931 * 13 12 11 15 15 C 1.37882 * 120.00284 * 274.93190 * 13 12 11 16 16 N 1.31518 * 119.99808 * 355.41947 * 15 13 12 17 17 Si 1.86800 * 120.00242 * 175.41794 * 15 13 12 18 18 H 1.48502 * 109.47002 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47091 * 119.99801 * 17 15 13 20 20 H 1.48497 * 109.47138 * 240.00628 * 17 15 13 21 21 C 1.53003 * 117.49932 * 80.48760 * 12 11 10 22 22 C 1.52998 * 117.49502 * 149.14904 * 12 11 10 23 23 O 1.33963 * 125.61981 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.47113 * 270.02682 * 1 2 3 25 25 H 1.09006 * 109.47265 * 30.02548 * 1 2 3 26 26 H 1.09000 * 109.46855 * 150.02382 * 1 2 3 27 27 H 1.07993 * 126.16757 * 180.27148 * 4 3 2 28 28 H 1.08996 * 109.47074 * 329.71026 * 6 5 4 29 29 H 1.09003 * 109.46911 * 209.71457 * 6 5 4 30 30 H 0.96996 * 119.99936 * 0.02562 * 7 6 5 31 31 H 0.97009 * 119.99753 * 0.02562 * 10 8 7 32 32 H 1.08993 * 109.47219 * 64.80231 * 11 10 8 33 33 H 1.09000 * 109.47241 * 304.79395 * 11 10 8 34 34 H 0.97001 * 119.99858 * 184.99726 * 16 15 13 35 35 H 1.08997 * 117.49622 * 214.99831 * 21 12 11 36 36 H 1.09000 * 117.49928 * 0.02562 * 21 12 11 37 37 H 1.08996 * 117.50254 * 359.97148 * 22 12 11 38 38 H 1.09005 * 117.49689 * 144.97447 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2655 1.0589 0.0000 4 6 3.5522 0.6676 0.0059 5 6 3.5698 -0.6756 0.0008 6 6 4.7937 -1.5548 0.0019 7 7 5.1894 -1.8394 1.3834 8 6 6.2651 -2.6128 1.6306 9 8 6.9068 -3.0747 0.7070 10 7 6.6294 -2.8742 2.9016 11 6 7.7990 -3.7145 3.1703 12 6 7.9218 -3.9508 4.6770 13 6 8.2092 -2.7256 5.5058 14 1 7.3975 -2.1857 5.9710 15 6 9.5087 -2.2969 5.6751 16 7 10.5037 -3.0066 5.1895 17 14 9.8559 -0.7081 6.5941 18 1 8.5745 -0.1024 7.0373 19 1 10.7026 -0.9968 7.7794 20 1 10.5666 0.2377 5.6965 21 6 7.0333 -5.0310 5.2974 22 6 8.5360 -5.2746 5.1366 23 8 2.2872 -1.0890 0.0005 24 1 -0.3633 0.0005 1.0276 25 1 -0.3634 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 4.4156 1.3163 0.0115 28 1 5.6084 -1.0441 -0.5115 29 1 4.5699 -2.4897 -0.5119 30 1 4.6767 -1.4717 2.1202 31 1 6.1171 -2.5059 3.6385 32 1 8.6967 -3.2147 2.8066 33 1 7.6839 -4.6711 2.6607 34 1 11.4200 -2.7444 5.3703 35 1 6.6567 -4.8553 6.3050 36 1 6.3616 -5.5735 4.6321 37 1 8.8522 -5.9773 4.3656 38 1 9.1483 -5.2591 6.0383 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001478555468.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:42 Heat of formation + Delta-G solvation = -8.920710 kcal Electronic energy + Delta-G solvation = -20985.093147 eV Core-core repulsion = 17636.236152 eV Total energy + Delta-G solvation = -3348.856995 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.42512 -40.97476 -38.58131 -36.20643 -35.85377 -34.97587 -33.94365 -33.02443 -30.16766 -28.03974 -27.10645 -25.72823 -23.36826 -22.93516 -22.12638 -21.88317 -21.23936 -19.48363 -18.38628 -17.89598 -17.74816 -17.01258 -16.76774 -16.49808 -15.81661 -15.70429 -15.32010 -14.99793 -14.85971 -14.41159 -14.23025 -13.90497 -13.81124 -13.54245 -13.39751 -13.21987 -12.90985 -12.85354 -12.37317 -12.32493 -12.00881 -11.67524 -11.52517 -11.30049 -10.93136 -10.45268 -10.37615 -10.05256 -9.85488 -9.65651 -8.08144 -6.22138 0.21426 1.41663 1.44243 1.45935 1.54414 1.58850 1.97954 2.18456 2.43237 3.08713 3.19952 3.32937 3.58582 3.63485 3.97486 4.11678 4.25816 4.41216 4.57491 4.62100 4.64653 4.66833 4.67786 4.75848 4.93594 5.00079 5.01677 5.03923 5.30377 5.32342 5.33750 5.57457 5.62434 5.72038 5.80034 6.04438 6.38346 6.63553 6.85413 7.14338 7.47513 7.60588 8.98945 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.020565 B = 0.003578 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.181175 B = 7823.311575 C = 8361.522089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.200 3.800 3 N -0.518 5.518 4 C -0.014 4.014 5 C -0.075 4.075 6 C 0.234 3.766 7 N -0.735 5.735 8 C 0.702 3.298 9 O -0.639 6.639 10 N -0.714 5.714 11 C 0.199 3.801 12 C 0.003 3.997 13 C -0.503 4.503 14 H 0.063 0.937 15 C 0.024 3.976 16 N -0.907 5.907 17 Si 0.949 3.051 18 H -0.262 1.262 19 H -0.284 1.284 20 H -0.289 1.289 21 C -0.178 4.178 22 C -0.153 4.153 23 O -0.207 6.207 24 H 0.111 0.889 25 H 0.113 0.887 26 H 0.107 0.893 27 H 0.202 0.798 28 H 0.106 0.894 29 H 0.080 0.920 30 H 0.408 0.592 31 H 0.407 0.593 32 H 0.026 0.974 33 H 0.037 0.963 34 H 0.259 0.741 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.080 5.149 -8.147 21.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.007 4.007 3 N -0.248 5.248 4 C -0.153 4.153 5 C -0.127 4.127 6 C 0.110 3.890 7 N -0.393 5.393 8 C 0.401 3.599 9 O -0.521 6.521 10 N -0.367 5.367 11 C 0.074 3.926 12 C 0.002 3.998 13 C -0.541 4.541 14 H 0.081 0.919 15 C -0.176 4.176 16 N -0.544 5.544 17 Si 0.776 3.224 18 H -0.186 1.186 19 H -0.210 1.210 20 H -0.215 1.215 21 C -0.215 4.215 22 C -0.191 4.191 23 O -0.095 6.095 24 H 0.129 0.871 25 H 0.132 0.868 26 H 0.126 0.874 27 H 0.218 0.782 28 H 0.124 0.876 29 H 0.099 0.901 30 H 0.244 0.756 31 H 0.242 0.758 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.548 5.315 -9.052 21.312 hybrid contribution 0.849 0.351 1.139 1.463 sum -17.699 5.666 -7.912 20.198 Atomic orbital electron populations 1.20596 0.78011 1.06667 1.06327 1.27414 0.98104 0.77970 0.97173 1.70555 1.02547 1.31180 1.20530 1.23519 0.95658 0.93147 1.02962 1.23170 0.83453 0.95177 1.10933 1.19274 0.88862 0.97784 0.83059 1.44962 1.30659 1.54836 1.08830 1.16033 0.80914 0.79431 0.83484 1.90862 1.57591 1.58985 1.44696 1.44937 1.32020 1.54347 1.05424 1.20436 0.85369 0.91320 0.95462 1.19078 1.00605 0.89815 0.90280 1.20689 0.92354 1.09991 1.31022 0.91875 1.25694 0.96470 0.99341 0.96134 1.70119 0.99028 1.40140 1.45157 0.85646 0.78367 0.80391 0.78035 1.18595 1.21048 1.21538 1.22995 0.92525 1.04438 1.01531 1.22391 0.94664 1.00349 1.01687 1.84423 1.16737 1.38365 1.69946 0.87097 0.86838 0.87419 0.78150 0.87567 0.90126 0.75585 0.75761 0.95606 0.94437 0.93227 0.89735 0.89446 0.91189 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.47 10.51 71.23 0.75 0.28 16 2 C 0.20 3.70 8.34 88.34 0.74 4.44 16 3 N -0.52 -11.66 11.29 -303.84 -3.43 -15.09 16 4 C -0.01 -0.29 11.80 83.39 0.98 0.69 16 5 C -0.07 -1.60 6.75 24.79 0.17 -1.43 16 6 C 0.23 5.41 6.22 85.63 0.53 5.94 16 7 N -0.74 -19.54 5.55 -482.31 -2.68 -22.22 16 8 C 0.70 25.59 8.57 179.05 1.53 27.13 16 9 O -0.64 -28.41 16.34 -3.96 -0.06 -28.47 16 10 N -0.71 -26.92 5.48 -478.54 -2.62 -29.54 16 11 C 0.20 9.01 5.50 86.38 0.48 9.48 16 12 C 0.00 0.14 1.47 -52.93 -0.08 0.06 16 13 C -0.50 -25.35 8.59 25.60 0.22 -25.13 16 14 H 0.06 3.07 7.82 -2.91 -0.02 3.05 16 15 C 0.02 1.28 5.43 84.66 0.46 1.74 16 16 N -0.91 -50.84 12.65 21.45 0.27 -50.57 16 17 Si 0.95 41.94 29.54 68.60 2.03 43.97 16 18 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 20 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 21 C -0.18 -7.03 9.96 30.62 0.30 -6.72 16 22 C -0.15 -6.94 9.14 30.62 0.28 -6.66 16 23 O -0.21 -4.45 10.78 -3.79 -0.04 -4.49 16 24 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 26 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.20 3.42 8.06 -2.91 -0.02 3.40 16 28 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.41 9.12 8.48 -92.71 -0.79 8.33 16 31 H 0.41 13.69 8.35 -92.70 -0.77 12.92 16 32 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.04 1.69 8.09 -2.39 -0.02 1.67 16 34 H 0.26 13.97 8.32 -92.71 -0.77 13.20 16 35 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 36 H 0.09 3.07 8.14 -2.39 -0.02 3.06 16 37 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 38 H 0.06 3.22 8.14 -2.38 -0.02 3.20 16 Total: -1.00 -67.91 335.78 -0.65 -68.55 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: -0.47 Total: 28.03 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 6.37 Total: 9.82 kcal Atomic # 7 Polarization: -108.96 SS G_CDS: -8.46 Total: -117.42 kcal Atomic # 8 Polarization: -32.85 SS G_CDS: -0.11 Total: -32.96 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -67.91 -0.65 -68.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001478555468.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.633 kcal (2) G-P(sol) polarization free energy of solvation -67.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds