Wall clock time and date at job start Tue Mar 31 2020 02:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35316 * 128.04097 * 2 1 4 4 O 1.34014 * 106.66881 * 180.24387 * 3 2 1 5 5 N 1.20910 * 111.84817 * 359.74570 * 4 3 2 6 6 C 1.30986 * 111.43932 * 0.02562 * 5 4 3 7 7 C 1.48326 * 126.94154 * 179.97438 * 6 5 4 8 8 O 1.21498 * 120.00338 * 180.02562 * 7 6 5 9 9 N 1.34774 * 119.99644 * 0.02857 * 7 6 5 10 10 C 1.46506 * 120.00072 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.47322 * 64.99970 * 11 10 9 13 13 N 1.46502 * 109.47004 * 304.99911 * 11 10 9 14 14 C 1.36937 * 120.00242 * 155.00151 * 13 11 10 15 15 H 1.08000 * 119.99698 * 0.02562 * 14 13 11 16 16 C 1.38808 * 120.00426 * 179.97438 * 14 13 11 17 17 N 1.31619 * 120.00011 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00285 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.46907 * 359.97438 * 18 16 14 20 20 H 1.48490 * 109.47423 * 119.99977 * 18 16 14 21 21 H 1.48502 * 109.47007 * 240.00346 * 18 16 14 22 22 C 1.53001 * 109.46997 * 185.00271 * 11 10 9 23 23 C 1.53000 * 117.49406 * 248.74401 * 22 11 10 24 24 C 1.52999 * 117.49917 * 180.08862 * 22 11 10 25 25 H 1.09000 * 109.46744 * 270.15908 * 1 2 3 26 26 H 1.08997 * 109.47312 * 30.15838 * 1 2 3 27 27 H 1.09004 * 109.47251 * 150.16168 * 1 2 3 28 28 H 1.07997 * 126.66109 * 359.95507 * 3 2 1 29 29 H 0.97001 * 120.00676 * 359.97438 * 9 7 6 30 30 H 1.09001 * 109.47060 * 300.00359 * 10 9 7 31 31 H 1.09004 * 109.47073 * 59.99848 * 10 9 7 32 32 H 0.97004 * 119.99954 * 335.00241 * 13 11 10 33 33 H 0.96993 * 120.00405 * 179.97438 * 17 16 14 34 34 H 1.09000 * 115.55061 * 34.41350 * 22 11 10 35 35 H 1.09001 * 117.50211 * 0.02562 * 23 22 11 36 36 H 1.09004 * 117.49834 * 145.02254 * 23 22 11 37 37 H 1.09000 * 117.49978 * 214.98132 * 24 22 11 38 38 H 1.09005 * 117.49789 * 359.97438 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3409 1.0657 0.0000 4 8 3.5888 0.5773 -0.0055 5 7 3.5989 -0.6317 -0.0037 6 6 2.3837 -1.1206 0.0025 7 6 1.9992 -2.5532 0.0059 8 8 0.8255 -2.8672 0.0113 9 7 2.9518 -3.5065 0.0031 10 6 2.5721 -4.9215 0.0070 11 6 3.8331 -5.7880 0.0032 12 1 4.3823 -5.6343 0.9320 13 7 4.6795 -5.4135 -1.1323 14 6 6.0288 -5.6423 -1.0854 15 1 6.4689 -6.0993 -0.2114 16 6 6.8308 -5.2880 -2.1615 17 7 6.2945 -4.7315 -3.2269 18 14 8.6713 -5.6008 -2.0978 19 1 9.0215 -6.2313 -0.7996 20 1 9.0582 -6.5067 -3.2089 21 1 9.3974 -4.3126 -2.2336 22 6 3.4390 -7.2614 -0.1185 23 6 3.6747 -8.1584 1.0983 24 6 4.5669 -8.2950 -0.1380 25 1 -0.3633 0.0029 1.0277 26 1 -0.3634 0.8885 -0.5163 27 1 -0.3634 -0.8915 -0.5113 28 1 2.0559 2.1074 -0.0007 29 1 3.8889 -3.2559 -0.0016 30 1 1.9856 -5.1379 0.8999 31 1 1.9776 -5.1406 -0.8800 32 1 4.2842 -5.0033 -1.9175 33 1 6.8548 -4.4835 -3.9787 34 1 2.5601 -7.4639 -0.7305 35 1 4.1101 -7.6989 1.9857 36 1 2.9511 -8.9515 1.2866 37 1 4.4299 -9.1777 -0.7625 38 1 5.5897 -7.9253 -0.0645 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480057098.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:46 Heat of formation + Delta-G solvation = 38.579006 kcal Electronic energy + Delta-G solvation = -21603.286092 eV Core-core repulsion = 18256.488840 eV Total energy + Delta-G solvation = -3346.797252 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -46.14168 -40.80471 -39.05725 -36.24612 -35.66106 -35.27046 -33.51910 -32.60461 -29.93448 -29.02960 -26.36789 -25.22221 -23.59304 -23.03218 -22.65507 -21.70792 -21.03475 -19.62923 -18.99900 -18.84884 -17.58298 -17.11297 -16.88847 -16.28306 -16.09727 -15.64355 -15.37378 -14.99518 -14.94370 -14.37671 -14.20514 -14.09547 -13.76106 -13.30081 -13.01839 -12.96841 -12.73192 -12.44821 -12.33838 -12.28751 -11.98286 -11.76865 -11.42828 -11.35874 -11.03870 -10.93549 -10.79714 -10.38454 -10.19127 -9.03921 -7.92110 -5.20171 0.10709 0.74226 1.46290 1.47315 1.55831 1.87850 2.04512 2.34224 2.54985 2.92693 3.05750 3.44842 3.59442 3.72598 3.92683 3.94794 4.10901 4.14969 4.29300 4.36072 4.43957 4.53994 4.62070 4.77517 4.80689 4.84491 4.89142 4.96703 5.06915 5.14351 5.30730 5.38557 5.39567 5.45795 5.58849 6.27406 6.29382 6.88979 7.12002 7.35340 8.05595 8.30747 9.31200 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.014986 B = 0.005256 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.927762 B = 5326.356858 C = 6825.580083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.170 4.170 3 C -0.041 4.041 4 O 0.131 5.869 5 N -0.355 5.355 6 C -0.063 4.063 7 C 0.591 3.409 8 O -0.553 6.553 9 N -0.699 5.699 10 C 0.126 3.874 11 C 0.195 3.805 12 H 0.055 0.945 13 N -0.724 5.724 14 C -0.219 4.219 15 H 0.078 0.922 16 C -0.072 4.072 17 N -0.968 5.968 18 Si 0.962 3.038 19 H -0.265 1.265 20 H -0.298 1.298 21 H -0.299 1.299 22 C -0.173 4.173 23 C -0.160 4.160 24 C -0.174 4.174 25 H 0.083 0.917 26 H 0.105 0.895 27 H 0.058 0.942 28 H 0.280 0.720 29 H 0.410 0.590 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.371 0.629 33 H 0.247 0.753 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.794 8.842 9.649 16.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.176 4.176 3 C -0.121 4.121 4 O 0.052 5.948 5 N -0.054 5.054 6 C -0.220 4.220 7 C 0.376 3.624 8 O -0.431 6.431 9 N -0.350 5.350 10 C 0.002 3.998 11 C 0.086 3.914 12 H 0.073 0.927 13 N -0.364 5.364 14 C -0.351 4.351 15 H 0.096 0.904 16 C -0.264 4.264 17 N -0.620 5.620 18 Si 0.792 3.208 19 H -0.190 1.190 20 H -0.226 1.226 21 H -0.226 1.226 22 C -0.194 4.194 23 C -0.198 4.198 24 C -0.211 4.211 25 H 0.102 0.898 26 H 0.123 0.877 27 H 0.077 0.923 28 H 0.296 0.704 29 H 0.246 0.754 30 H 0.107 0.893 31 H 0.078 0.922 32 H 0.203 0.797 33 H 0.056 0.944 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.128 0.872 37 H 0.106 0.894 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.240 7.876 9.736 16.177 hybrid contribution 0.783 -0.003 -0.887 1.183 sum -9.458 7.873 8.849 15.157 Atomic orbital electron populations 1.20222 0.85240 1.04079 1.03665 1.21734 1.00171 0.89598 1.06085 1.26767 0.80431 1.02833 1.02041 1.84760 1.31136 1.14271 1.64600 1.74303 1.22097 0.92769 1.16181 1.23588 0.90669 0.97170 1.10578 1.17159 0.85314 0.83308 0.76656 1.90705 1.17974 1.82378 1.52066 1.45939 1.10255 1.06627 1.72150 1.21645 0.97209 0.78544 1.02356 1.20171 0.89462 0.90482 0.91241 0.92687 1.42564 1.03990 1.72698 1.17128 1.19495 0.84369 1.31141 1.00053 0.90444 1.25406 1.01557 1.02735 0.96703 1.69818 1.35348 1.49612 1.07175 0.85235 0.81508 0.76623 0.77401 1.18969 1.22603 1.22616 1.22883 1.00406 0.93454 1.02663 1.23039 1.02788 1.02225 0.91722 1.22739 0.96382 1.00286 1.01682 0.89850 0.87688 0.92252 0.70433 0.75378 0.89284 0.92214 0.79694 0.94383 0.88461 0.88718 0.87245 0.89380 0.90244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.40 10.01 71.24 0.71 -0.68 16 2 C -0.17 -3.99 6.34 -19.53 -0.12 -4.11 16 3 C -0.04 -0.66 12.24 67.15 0.82 0.16 16 4 O 0.13 3.26 11.18 71.90 0.80 4.07 16 5 N -0.36 -11.70 11.84 -49.50 -0.59 -12.29 16 6 C -0.06 -2.04 7.19 42.96 0.31 -1.74 16 7 C 0.59 21.75 7.85 86.93 0.68 22.44 16 8 O -0.55 -21.50 15.34 -3.71 -0.06 -21.55 16 9 N -0.70 -26.01 5.39 -465.49 -2.51 -28.51 16 10 C 0.13 4.40 5.21 86.38 0.45 4.85 16 11 C 0.20 7.36 2.70 44.99 0.12 7.48 16 12 H 0.06 2.09 7.84 -2.39 -0.02 2.07 16 13 N -0.72 -34.58 4.54 -322.95 -1.47 -36.05 16 14 C -0.22 -11.50 8.63 84.03 0.73 -10.77 16 15 H 0.08 3.93 6.91 -2.91 -0.02 3.91 16 16 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 17 N -0.97 -58.90 13.06 21.65 0.28 -58.62 16 18 Si 0.96 45.93 29.55 68.60 2.03 47.96 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 20 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 21 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 22 C -0.17 -5.82 5.36 -10.79 -0.06 -5.88 16 23 C -0.16 -4.41 10.18 30.62 0.31 -4.10 16 24 C -0.17 -5.97 9.78 30.62 0.30 -5.67 16 25 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.06 1.46 6.89 -2.38 -0.02 1.44 16 28 H 0.28 0.84 8.06 -2.91 -0.02 0.81 16 29 H 0.41 16.48 7.90 -92.71 -0.73 15.75 16 30 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 31 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 32 H 0.37 19.78 7.80 -92.71 -0.72 19.06 16 33 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 34 H 0.10 3.18 8.11 -2.39 -0.02 3.16 16 35 H 0.09 2.49 8.05 -2.39 -0.02 2.47 16 36 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 38 H 0.08 3.15 6.23 -2.38 -0.01 3.13 16 Total: -1.00 -69.61 328.15 2.86 -66.75 By element: Atomic # 1 Polarization: 40.22 SS G_CDS: -0.35 Total: 39.87 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 4.72 Total: -1.61 kcal Atomic # 7 Polarization: -131.20 SS G_CDS: -4.28 Total: -135.47 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: 0.75 Total: -17.49 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -69.61 2.86 -66.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480057098.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.324 kcal (2) G-P(sol) polarization free energy of solvation -69.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds