Wall clock time and date at job start Tue Mar 31 2020 01:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30013 * 127.33092 * 2 1 4 4 O 1.20661 * 112.29758 * 180.02562 * 3 2 1 5 5 C 1.33495 * 113.15579 * 359.71684 * 4 3 2 6 6 C 1.50702 * 126.82771 * 180.31194 * 5 4 3 7 7 C 1.37357 * 106.33984 * 0.44987 * 5 4 3 8 8 C 1.47401 * 128.56066 * 179.85394 * 7 5 4 9 9 O 1.21600 * 120.00270 * 269.67619 * 8 7 5 10 10 N 1.34771 * 119.99856 * 89.68236 * 8 7 5 11 11 C 1.46504 * 120.00472 * 179.97438 * 10 8 7 12 12 C 1.50694 * 109.47708 * 179.97438 * 11 10 8 13 13 C 1.30997 * 120.00034 * 127.00150 * 12 11 10 14 14 C 1.50693 * 120.00113 * 7.56295 * 13 12 11 15 15 N 1.46504 * 109.47376 * 127.15414 * 14 13 12 16 16 C 1.36938 * 120.00075 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00329 * 0.02562 * 16 15 14 18 18 C 1.38816 * 119.99412 * 179.72379 * 16 15 14 19 19 N 1.31615 * 120.00340 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99359 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46980 * 90.00362 * 20 18 16 22 22 H 1.48499 * 109.46774 * 209.99939 * 20 18 16 23 23 H 1.48494 * 109.47225 * 330.00075 * 20 18 16 24 24 H 1.08997 * 109.47242 * 269.96217 * 1 2 3 25 25 H 1.09005 * 109.47076 * 29.96436 * 1 2 3 26 26 H 1.09005 * 109.47011 * 149.95760 * 1 2 3 27 27 H 1.09001 * 109.46666 * 270.16772 * 6 5 4 28 28 H 1.08994 * 109.47128 * 30.16496 * 6 5 4 29 29 H 1.08998 * 109.47135 * 150.16958 * 6 5 4 30 30 H 0.97009 * 120.00498 * 359.97438 * 10 8 7 31 31 H 1.09003 * 109.46824 * 59.99418 * 11 10 8 32 32 H 1.08998 * 109.46764 * 299.99735 * 11 10 8 33 33 H 1.08004 * 119.99844 * 307.00479 * 12 11 10 34 34 H 1.08007 * 119.99793 * 187.56118 * 13 12 11 35 35 H 1.09003 * 109.47494 * 7.15328 * 14 13 12 36 36 H 1.09003 * 109.47357 * 247.15310 * 14 13 12 37 37 H 0.96998 * 119.99804 * 359.97438 * 15 14 13 38 38 H 0.97005 * 119.99917 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 -0.0005 5 6 3.6494 -0.6007 0.0051 6 6 4.9712 -1.3245 0.0128 7 6 2.3991 -1.1695 -0.0006 8 6 2.0401 -2.5992 -0.0009 9 8 1.8916 -3.1886 -1.0541 10 7 1.8764 -3.2530 1.1661 11 6 1.5190 -4.6738 1.1660 12 6 1.3978 -5.1616 2.5867 13 6 0.3092 -5.7767 2.9774 14 6 -0.7488 -6.1484 1.9707 15 7 -1.0617 -7.5742 2.0950 16 6 -2.0019 -8.1427 1.2776 17 1 -2.5124 -7.5400 0.5411 18 6 -2.2942 -9.4949 1.3915 19 7 -1.6680 -10.2305 2.2854 20 14 -3.5762 -10.2705 0.2760 21 1 -2.9204 -10.7704 -0.9591 22 1 -4.2281 -11.4020 0.9830 23 1 -4.5992 -9.2556 -0.0828 24 1 -0.3633 -0.0007 1.0276 25 1 -0.3633 0.8903 -0.5133 26 1 -0.3633 -0.8896 -0.5145 27 1 5.2951 -1.5002 -1.0130 28 1 5.7146 -0.7178 0.5297 29 1 4.8598 -2.2790 0.5271 30 1 1.9951 -2.7830 2.0064 31 1 2.2932 -5.2431 0.6515 32 1 0.5670 -4.8089 0.6527 33 1 2.2084 -5.0039 3.2827 34 1 0.1701 -6.0175 4.0210 35 1 -0.3816 -5.9433 0.9651 36 1 -1.6485 -5.5616 2.1557 37 1 -0.6029 -8.1156 2.7562 38 1 -1.8726 -11.1754 2.3653 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482981591.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:55 Heat of formation + Delta-G solvation = 54.002786 kcal Electronic energy + Delta-G solvation = -20690.034817 eV Core-core repulsion = 17343.906390 eV Total energy + Delta-G solvation = -3346.128427 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.14367 -39.69803 -36.65158 -34.83225 -34.56757 -33.90172 -32.81904 -30.49120 -29.08061 -28.51172 -26.83689 -25.18886 -23.91464 -22.51886 -21.06622 -20.25933 -19.03209 -18.09522 -17.82311 -16.93184 -16.47313 -16.37140 -15.54803 -14.88392 -14.48255 -14.42626 -13.82787 -13.66367 -13.60862 -13.49810 -13.45300 -13.23467 -13.03186 -12.75281 -12.67295 -12.46885 -11.80412 -11.39698 -10.98431 -10.82391 -10.52352 -10.40273 -10.15136 -10.06381 -9.80593 -9.67626 -9.29501 -9.08089 -8.66905 -6.94986 -5.79210 -3.08608 1.00356 1.62930 2.15625 2.26338 2.59108 3.26378 3.43737 3.48918 3.50422 3.85519 3.95105 4.55578 4.59748 4.60703 4.87870 4.96778 4.97400 5.09046 5.19919 5.22962 5.26253 5.37482 5.52040 5.53788 5.61186 5.75527 5.80926 5.91197 6.15297 6.22902 6.48021 6.52067 6.81493 7.07803 7.31566 7.68216 7.93503 7.99436 8.39165 9.50705 10.06036 10.41310 11.43536 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.028459 B = 0.002919 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.649820 B = 9589.024837 C = 9899.784946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.057 3.943 3 N -0.357 5.357 4 O 0.095 5.905 5 C 0.018 3.982 6 C -0.079 4.079 7 C -0.251 4.251 8 C 0.595 3.405 9 O -0.521 6.521 10 N -0.710 5.710 11 C 0.140 3.860 12 C -0.202 4.202 13 C -0.106 4.106 14 C 0.161 3.839 15 N -0.728 5.728 16 C -0.242 4.242 17 H 0.072 0.928 18 C -0.013 4.013 19 N -0.933 5.933 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.401 0.599 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.036 0.964 36 H 0.029 0.971 37 H 0.385 0.615 38 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.515 21.007 -0.025 24.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 N -0.064 5.064 4 O 0.034 5.966 5 C -0.046 4.046 6 C -0.136 4.136 7 C -0.258 4.258 8 C 0.379 3.621 9 O -0.397 6.397 10 N -0.361 5.361 11 C 0.018 3.982 12 C -0.221 4.221 13 C -0.125 4.125 14 C 0.034 3.966 15 N -0.372 5.372 16 C -0.373 4.373 17 H 0.090 0.910 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.740 3.260 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 H 0.106 0.894 25 H 0.101 0.899 26 H 0.105 0.895 27 H 0.115 0.885 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.235 0.765 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.053 0.947 36 H 0.046 0.954 37 H 0.219 0.781 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.077 21.838 -0.926 24.972 hybrid contribution -0.539 -1.273 0.142 1.390 sum 11.538 20.565 -0.784 23.593 Atomic orbital electron populations 1.20268 0.84986 1.04532 1.03994 1.24786 0.98671 0.86427 1.00624 1.73620 0.89113 1.23338 1.20350 1.84531 1.21538 1.22552 1.68006 1.24632 0.97385 0.83783 0.98789 1.20476 0.88961 0.99229 1.04956 1.21963 0.92881 0.95387 1.15570 1.16857 0.77319 0.83789 0.84182 1.90866 1.49792 1.67781 1.31230 1.46021 1.70320 1.11829 1.07973 1.20646 1.02539 0.79085 0.95925 1.22557 0.98382 1.04954 0.96204 1.23318 0.94564 0.94445 1.00189 1.20019 0.93833 0.87850 0.94880 1.42268 1.47762 1.03247 1.43919 1.19247 1.13475 0.92309 1.12278 0.91037 1.24760 1.00334 0.96380 0.99409 1.69664 1.44999 1.06533 1.36940 0.86161 0.81057 0.78879 0.79936 1.21594 1.21721 1.20669 0.89444 0.89868 0.89472 0.88549 0.89046 0.88754 0.76465 0.90728 0.89004 0.86968 0.86798 0.94676 0.95365 0.78147 0.93443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 10.49 36.01 0.38 -0.33 16 2 C 0.06 0.64 7.59 -79.77 -0.61 0.03 16 3 N -0.36 -4.18 12.01 34.78 0.42 -3.77 16 4 O 0.09 0.99 11.06 18.65 0.21 1.20 16 5 C 0.02 0.16 7.55 -34.63 -0.26 -0.10 16 6 C -0.08 -0.44 10.33 36.01 0.37 -0.07 16 7 C -0.25 -2.82 6.24 -102.90 -0.64 -3.46 16 8 C 0.60 7.70 7.60 -12.53 -0.10 7.61 16 9 O -0.52 -8.95 17.11 5.28 0.09 -8.86 16 10 N -0.71 -7.78 5.54 -62.57 -0.35 -8.13 16 11 C 0.14 1.85 5.76 -5.19 -0.03 1.82 16 12 C -0.20 -2.55 9.63 -36.03 -0.35 -2.89 16 13 C -0.11 -1.63 9.63 -36.03 -0.35 -1.98 16 14 C 0.16 3.18 6.34 -5.19 -0.03 3.15 16 15 N -0.73 -18.46 5.59 -61.08 -0.34 -18.80 16 16 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 17 H 0.07 1.96 7.83 -52.49 -0.41 1.54 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -28.24 13.06 55.49 0.72 -27.51 16 20 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 0.50 8.11 -51.93 -0.42 0.08 16 30 H 0.40 3.34 8.45 -40.82 -0.34 3.00 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.09 1.43 5.30 -51.93 -0.28 1.15 16 33 H 0.11 1.15 8.06 -52.48 -0.42 0.72 16 34 H 0.11 1.67 8.06 -52.48 -0.42 1.24 16 35 H 0.04 0.71 5.30 -51.93 -0.28 0.43 16 36 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.38 10.21 7.66 -40.82 -0.31 9.90 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 335.96 15.07 5.06 5.06 Total: -1.00 -34.13 335.96 -6.05 -40.18 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -4.98 Total: 6.83 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -1.86 Total: -3.66 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: 0.45 Total: -58.21 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: 0.30 Total: -7.67 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.13 -6.05 -40.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482981591.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.182 kcal (2) G-P(sol) polarization free energy of solvation -34.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds