Wall clock time and date at job start Tue Mar 31 2020 02:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.41256 * 128.07489 * 2 1 4 4 N 1.30137 * 106.59014 * 179.97438 * 3 2 1 5 5 O 1.20885 * 111.97632 * 0.02562 * 4 3 2 6 6 C 1.34637 * 111.47654 * 359.97438 * 5 4 3 7 7 C 1.47506 * 126.94657 * 180.25780 * 6 5 4 8 8 O 1.21589 * 119.99900 * 179.68172 * 7 6 5 9 9 N 1.34776 * 120.00113 * 359.68901 * 7 6 5 10 10 C 1.47426 * 125.64597 * 354.92994 * 9 7 6 11 11 C 1.55132 * 104.71817 * 155.81576 * 10 9 7 12 12 C 1.55154 * 101.48647 * 37.29802 * 11 10 9 13 13 C 1.47019 * 125.64887 * 175.23722 * 9 7 6 14 14 H 1.09008 * 109.88356 * 300.44038 * 13 9 7 15 15 C 1.53002 * 109.88223 * 61.60457 * 13 9 7 16 16 N 1.46499 * 109.47078 * 185.37006 * 15 13 9 17 17 C 1.36939 * 120.00106 * 185.01299 * 16 15 13 18 18 H 1.07994 * 119.99916 * 0.02562 * 17 16 15 19 19 C 1.38816 * 120.00068 * 179.97438 * 17 16 15 20 20 N 1.31623 * 120.00042 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99782 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47148 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47240 * 120.00326 * 21 19 17 24 24 H 1.48504 * 109.46924 * 240.00153 * 21 19 17 25 25 H 1.08997 * 109.46835 * 270.02205 * 1 2 3 26 26 H 1.08995 * 109.47391 * 30.02307 * 1 2 3 27 27 H 1.08998 * 109.46956 * 150.02393 * 1 2 3 28 28 H 1.08002 * 126.70744 * 359.97438 * 3 2 1 29 29 H 1.09003 * 110.36692 * 274.74371 * 10 9 7 30 30 H 1.09000 * 110.36632 * 37.07079 * 10 9 7 31 31 H 1.08997 * 111.19843 * 279.18917 * 11 10 9 32 32 H 1.09003 * 110.90073 * 155.27042 * 11 10 9 33 33 H 1.09000 * 110.71858 * 205.96696 * 12 11 10 34 34 H 1.09004 * 110.72678 * 82.69480 * 12 11 10 35 35 H 1.08994 * 109.47425 * 305.36910 * 15 13 9 36 36 H 1.08998 * 109.47094 * 65.37111 * 15 13 9 37 37 H 0.97008 * 120.00105 * 5.01611 * 16 15 13 38 38 H 0.97000 * 119.99805 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3782 1.1120 0.0000 4 7 3.5891 0.6353 0.0006 5 8 3.5995 -0.5735 0.0004 6 6 2.3509 -1.0771 0.0002 7 6 1.9696 -2.5021 0.0053 8 8 0.7953 -2.8172 0.0104 9 7 2.9230 -3.4547 0.0045 10 6 4.3738 -3.2182 -0.1071 11 6 5.0277 -4.4630 0.5484 12 6 4.0678 -5.5930 0.0912 13 6 2.6879 -4.9023 0.1083 14 1 2.1719 -5.1281 1.0416 15 6 1.8519 -5.3803 -1.0806 16 7 1.5147 -6.7949 -0.9033 17 6 0.8553 -7.4711 -1.8948 18 1 0.5841 -6.9617 -2.8076 19 6 0.5363 -8.8116 -1.7269 20 7 0.8672 -9.4326 -0.6146 21 14 -0.3627 -9.7342 -3.0797 22 1 -0.6178 -8.8169 -4.2192 23 1 0.4705 -10.8742 -3.5395 24 1 -1.6550 -10.2452 -2.5560 25 1 -0.3633 0.0004 1.0277 26 1 -0.3634 0.8897 -0.5142 27 1 -0.3633 -0.8902 -0.5135 28 1 2.0947 2.1541 -0.0004 29 1 4.6661 -3.1405 -1.1543 30 1 4.6535 -2.3142 0.4339 31 1 5.0393 -4.3760 1.6348 32 1 6.0334 -4.6238 0.1601 33 1 4.0908 -6.4262 0.7936 34 1 4.3186 -5.9285 -0.9151 35 1 0.9355 -4.7931 -1.1400 36 1 2.4235 -5.2555 -2.0003 37 1 1.7586 -7.2525 -0.0835 38 1 0.6440 -10.3693 -0.4972 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483950960.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:01 Heat of formation + Delta-G solvation = 45.786445 kcal Electronic energy + Delta-G solvation = -21959.982375 eV Core-core repulsion = 18613.497661 eV Total energy + Delta-G solvation = -3346.484714 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.18544 -40.08415 -37.60606 -34.91726 -34.51839 -32.72758 -31.47195 -31.33777 -28.86603 -28.32923 -25.27775 -24.41242 -23.07533 -22.24939 -21.93520 -20.71817 -19.69816 -17.96512 -17.88945 -16.95501 -16.46945 -15.98794 -15.30294 -14.52375 -14.45880 -14.23346 -13.69338 -13.54194 -13.44782 -13.30355 -13.18030 -12.88063 -12.73231 -12.60946 -12.23864 -11.52407 -11.47078 -11.11268 -10.92239 -10.83627 -10.62047 -10.54827 -10.47596 -10.11778 -10.01292 -9.69337 -9.61567 -8.82645 -8.57774 -6.88031 -5.73412 -3.01582 0.67288 1.86953 2.44033 2.96522 3.07373 3.46256 3.52215 3.54395 3.95648 4.27022 4.49410 4.58212 4.65250 4.83348 4.88213 4.99966 5.12473 5.37547 5.46807 5.47962 5.51579 5.60765 5.61316 5.68323 5.80008 5.91149 5.99420 6.03790 6.07548 6.16666 6.40172 6.49046 6.78447 6.98029 7.41544 7.74625 7.78318 8.04163 8.45367 9.56669 10.12677 10.48310 11.49689 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.024579 B = 0.004228 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.919444 B = 6620.912284 C = 7454.710203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.124 4.124 3 C -0.014 4.014 4 N -0.350 5.350 5 O 0.114 5.886 6 C -0.080 4.080 7 C 0.612 3.388 8 O -0.497 6.497 9 N -0.599 5.599 10 C 0.094 3.906 11 C -0.133 4.133 12 C -0.120 4.120 13 C 0.131 3.869 14 H 0.081 0.919 15 C 0.144 3.856 16 N -0.728 5.728 17 C -0.234 4.234 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.907 3.093 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.291 1.291 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.197 0.803 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.036 0.964 36 H 0.022 0.978 37 H 0.383 0.617 38 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.361 19.289 3.535 20.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.129 4.129 3 C -0.192 4.192 4 N -0.050 5.050 5 O 0.042 5.958 6 C -0.146 4.146 7 C 0.397 3.603 8 O -0.372 6.372 9 N -0.332 5.332 10 C -0.029 4.029 11 C -0.171 4.171 12 C -0.158 4.158 13 C 0.029 3.971 14 H 0.099 0.901 15 C 0.016 3.984 16 N -0.373 5.373 17 C -0.365 4.365 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.583 5.583 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.111 0.889 28 H 0.214 0.786 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.053 0.947 36 H 0.040 0.960 37 H 0.217 0.783 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.788 19.702 3.376 21.453 hybrid contribution -1.103 -0.647 -0.471 1.362 sum 6.685 19.055 2.905 20.402 Atomic orbital electron populations 1.20340 0.86261 1.04281 1.03486 1.21650 0.99114 0.90222 1.01915 1.24974 0.87807 1.02009 1.04424 1.73738 1.23178 0.91634 1.16459 1.85024 1.28299 1.15282 1.67176 1.24125 0.84412 0.96244 1.09834 1.16113 0.84986 0.80867 0.78287 1.90904 1.16539 1.79921 1.49843 1.48392 1.06837 1.07053 1.70917 1.22585 0.79452 0.99391 1.01479 1.22841 0.99224 0.94172 1.00878 1.22693 0.92211 0.97288 1.03610 1.21941 0.97350 0.76984 1.00818 0.90062 1.20996 0.96382 0.87545 0.93495 1.42198 1.69673 1.05020 1.20397 1.19254 1.28511 0.92386 0.96360 0.91193 1.24715 1.01891 0.96811 0.97568 1.69667 1.52509 1.10592 1.25549 0.86112 0.79174 0.79760 0.81145 1.20586 1.21909 1.21866 0.90161 0.90834 0.88912 0.78589 0.90717 0.89937 0.90611 0.89698 0.89491 0.89689 0.94660 0.95997 0.78301 0.93612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.86 9.95 36.01 0.36 -0.50 16 2 C -0.12 -1.42 6.37 -103.98 -0.66 -2.09 16 3 C -0.01 -0.14 12.14 -17.12 -0.21 -0.35 16 4 N -0.35 -4.18 12.04 30.46 0.37 -3.81 16 5 O 0.11 1.40 8.48 15.57 0.13 1.53 16 6 C -0.08 -1.07 7.07 -36.32 -0.26 -1.32 16 7 C 0.61 9.65 7.66 -12.48 -0.10 9.55 16 8 O -0.50 -9.33 13.91 5.29 0.07 -9.26 16 9 N -0.60 -8.83 3.06 -164.10 -0.50 -9.34 16 10 C 0.09 1.06 6.39 -2.41 -0.02 1.04 16 11 C -0.13 -1.38 7.10 -24.46 -0.17 -1.56 16 12 C -0.12 -1.69 6.24 -24.90 -0.16 -1.85 16 13 C 0.13 2.22 2.94 -66.95 -0.20 2.02 16 14 H 0.08 1.46 8.14 -51.92 -0.42 1.04 16 15 C 0.14 3.08 5.66 -4.04 -0.02 3.05 16 16 N -0.73 -18.72 5.42 -59.91 -0.32 -19.05 16 17 C -0.23 -6.68 9.99 -15.06 -0.15 -6.83 16 18 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 20 N -0.93 -28.30 13.06 55.49 0.72 -27.57 16 21 Si 0.91 22.72 29.55 -169.99 -5.02 17.69 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.09 1.13 6.74 -51.93 -0.35 0.78 16 28 H 0.20 1.20 8.06 -52.49 -0.42 0.78 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.84 5.99 -51.93 -0.31 0.52 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.08 1.29 7.76 -51.93 -0.40 0.89 16 35 H 0.04 0.84 6.55 -51.93 -0.34 0.50 16 36 H 0.02 0.47 8.01 -51.93 -0.42 0.06 16 37 H 0.38 10.15 7.62 -40.82 -0.31 9.84 16 38 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 317.72 15.07 4.79 4.79 Total: -1.00 -32.86 317.72 -6.50 -39.36 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -5.06 Total: 4.99 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -1.67 Total: 0.66 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: 0.26 Total: -59.77 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: 0.21 Total: -7.72 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.86 -6.50 -39.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483950960.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.150 kcal (2) G-P(sol) polarization free energy of solvation -32.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds