Wall clock time and date at job start Tue Mar 31 2020 02:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.33698 * 126.27792 * 2 1 4 4 C 1.30611 * 108.99935 * 180.15396 * 3 2 1 5 5 O 1.33668 * 109.15305 * 359.60037 * 4 3 2 6 6 C 1.35340 * 107.68343 * 0.24602 * 5 4 3 7 7 C 1.46728 * 126.64345 * 179.97438 * 6 5 4 8 8 O 1.21679 * 119.99974 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99759 * 0.02562 * 7 6 5 10 10 C 1.46498 * 119.99831 * 179.97438 * 9 7 6 11 11 C 1.53784 * 113.61412 * 254.13737 * 10 9 7 12 12 C 1.53959 * 87.01931 * 220.04742 * 11 10 9 13 13 C 1.53001 * 113.66241 * 139.93184 * 12 11 10 14 14 N 1.46502 * 109.46908 * 87.44409 * 13 12 11 15 15 C 1.36941 * 120.00047 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99654 * 359.97438 * 15 14 13 17 17 C 1.38805 * 120.00000 * 180.02562 * 15 14 13 18 18 N 1.31626 * 119.99819 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00169 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46858 * 90.00163 * 19 17 15 21 21 H 1.48502 * 109.47212 * 209.99842 * 19 17 15 22 22 H 1.48496 * 109.47253 * 330.00191 * 19 17 15 23 23 C 1.53783 * 87.10932 * 25.36612 * 12 11 10 24 24 H 1.08993 * 109.47376 * 270.27903 * 1 2 3 25 25 H 1.08998 * 109.46850 * 30.28224 * 1 2 3 26 26 H 1.09003 * 109.46989 * 150.27982 * 1 2 3 27 27 H 1.08002 * 125.42615 * 179.87304 * 4 3 2 28 28 H 0.96998 * 120.00452 * 0.02562 * 9 7 6 29 29 H 1.08999 * 112.85003 * 25.33244 * 10 9 7 30 30 H 1.08995 * 113.61804 * 334.56786 * 11 10 9 31 31 H 1.09002 * 113.61115 * 105.47361 * 11 10 9 32 32 H 1.08998 * 113.61244 * 270.80045 * 12 11 10 33 33 H 1.08997 * 109.46839 * 207.43891 * 13 12 11 34 34 H 1.08991 * 109.47252 * 327.44341 * 13 12 11 35 35 H 0.96996 * 120.00379 * 359.97438 * 14 13 12 36 36 H 0.97002 * 119.99261 * 179.97438 * 18 17 15 37 37 H 1.08998 * 113.60887 * 220.08967 * 23 12 11 38 38 H 1.08993 * 113.69208 * 89.20082 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5452 0.6899 -0.0033 5 8 3.5890 -0.6461 0.0033 6 6 2.3136 -1.0992 0.0054 7 6 1.8826 -2.5017 0.0118 8 8 0.6966 -2.7736 0.0127 9 7 2.8003 -3.4887 0.0167 10 6 2.3700 -4.8890 0.0236 11 6 2.5572 -5.5843 1.3825 12 6 3.0170 -6.8242 0.5941 13 6 4.1997 -7.5545 1.2334 14 7 3.7028 -8.5306 2.2063 15 6 4.5850 -9.3083 2.9078 16 1 5.6472 -9.2023 2.7435 17 6 4.1141 -10.2336 3.8291 18 7 4.9622 -10.9814 4.5030 19 14 2.2770 -10.4175 4.1127 20 1 1.7323 -11.4384 3.1819 21 1 2.0326 -10.8445 5.5138 22 1 1.6055 -9.1158 3.8676 23 6 3.4245 -5.8603 -0.5327 24 1 -0.3634 0.0050 1.0276 25 1 -0.3633 0.8874 -0.5182 26 1 -0.3633 -0.8925 -0.5095 27 1 4.4044 1.3443 -0.0061 28 1 3.7458 -3.2719 0.0164 29 1 1.3778 -5.0290 -0.4055 30 1 3.3418 -5.1409 1.9954 31 1 1.6256 -5.7337 1.9284 32 1 2.2024 -7.4951 0.3216 33 1 4.7694 -8.0699 0.4602 34 1 4.8423 -6.8332 1.7383 35 1 2.7488 -8.6262 2.3535 36 1 4.6330 -11.6277 5.1471 37 1 3.1922 -6.2322 -1.5306 38 1 4.4466 -5.4919 -0.4457 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485089122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:39:16 Heat of formation + Delta-G solvation = 19.396989 kcal Electronic energy + Delta-G solvation = -20903.545037 eV Core-core repulsion = 17555.915990 eV Total energy + Delta-G solvation = -3347.629047 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.82299 -40.23089 -38.50880 -35.79830 -34.76034 -33.45878 -31.96131 -31.16805 -28.44797 -27.09375 -25.68490 -24.53004 -23.12022 -22.09733 -21.25827 -20.81697 -19.78340 -18.38790 -17.57920 -17.27585 -16.85799 -16.36165 -15.41885 -14.93835 -14.91001 -14.63345 -14.43858 -13.68945 -13.61007 -13.40321 -13.36016 -12.71858 -12.54584 -12.43188 -12.06246 -11.87141 -11.60569 -11.48969 -11.27739 -11.01184 -10.85463 -10.38485 -10.32950 -10.21079 -10.00873 -9.58885 -9.46325 -9.12189 -8.88072 -7.22390 -5.76940 -3.12225 0.44648 2.03509 2.07985 2.75977 2.90986 3.38348 3.41445 3.46041 3.64483 4.34277 4.37083 4.52946 4.58828 4.61039 4.85908 4.91128 5.04223 5.09929 5.35210 5.45608 5.50752 5.54669 5.58642 5.67346 5.75310 5.78651 5.86355 5.93875 6.01275 6.08513 6.16388 6.43738 6.65411 6.76464 7.02175 7.24665 7.75642 7.99461 8.42419 9.21855 9.94366 10.14348 11.41556 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.031556 B = 0.003005 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.085126 B = 9315.087685 C = 9553.079471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.079 3.921 3 N -0.495 5.495 4 C 0.203 3.797 5 O -0.191 6.191 6 C -0.116 4.116 7 C 0.608 3.392 8 O -0.514 6.514 9 N -0.704 5.704 10 C 0.117 3.883 11 C -0.141 4.141 12 C -0.116 4.116 13 C 0.170 3.830 14 N -0.756 5.756 15 C -0.244 4.244 16 H 0.089 0.911 17 C 0.003 3.997 18 N -0.935 5.935 19 Si 0.885 3.115 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.276 1.276 23 C -0.135 4.135 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.096 0.904 27 H 0.257 0.743 28 H 0.406 0.594 29 H 0.117 0.883 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.028 0.972 34 H 0.027 0.973 35 H 0.361 0.639 36 H 0.259 0.741 37 H 0.075 0.925 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.599 23.547 -12.600 27.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.044 4.044 3 N -0.224 5.224 4 C -0.022 4.022 5 O -0.077 6.077 6 C -0.171 4.171 7 C 0.394 3.606 8 O -0.392 6.392 9 N -0.353 5.353 10 C 0.013 3.987 11 C -0.180 4.180 12 C -0.135 4.135 13 C 0.042 3.958 14 N -0.401 5.401 15 C -0.374 4.374 16 H 0.107 0.893 17 C -0.193 4.193 18 N -0.583 5.583 19 Si 0.715 3.285 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.203 1.203 23 C -0.173 4.173 24 H 0.101 0.899 25 H 0.096 0.904 26 H 0.114 0.886 27 H 0.273 0.727 28 H 0.241 0.759 29 H 0.135 0.865 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.112 0.888 33 H 0.046 0.954 34 H 0.045 0.955 35 H 0.194 0.806 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.359 23.815 -12.517 27.433 hybrid contribution -0.275 -0.606 0.412 0.783 sum -5.633 23.208 -12.105 26.775 Atomic orbital electron populations 1.20411 0.85239 1.04424 1.03880 1.22104 0.98474 0.86337 0.97518 1.70364 1.01373 1.31464 1.19193 1.28367 0.97652 0.79396 0.96796 1.84496 1.29616 1.24499 1.69095 1.22995 0.81446 0.96416 1.16269 1.16352 0.85955 0.81353 0.76969 1.90865 1.15744 1.81841 1.50727 1.45972 1.09632 1.06235 1.73477 1.22803 0.99916 0.77393 0.98584 1.23534 1.02397 0.95993 0.96053 1.22625 0.99929 0.95220 0.95721 1.20574 0.92945 0.90930 0.91301 1.42706 1.05129 1.44629 1.47653 1.19065 0.90860 1.12341 1.15170 0.89291 1.24682 0.97129 0.98585 0.98863 1.69710 1.32790 1.26584 1.29244 0.86531 0.86803 0.77749 0.77377 1.21061 1.21739 1.20250 1.23320 0.98905 0.95913 0.99190 0.89867 0.90434 0.88567 0.72716 0.75932 0.86527 0.89423 0.91008 0.88814 0.95389 0.95540 0.80626 0.93070 0.90612 0.89343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 9.87 36.00 0.36 -0.41 16 2 C 0.08 0.86 7.16 -82.47 -0.59 0.27 16 3 N -0.49 -4.92 11.26 -10.88 -0.12 -5.04 16 4 C 0.20 1.39 13.21 52.24 0.69 2.08 16 5 O -0.19 -1.67 10.57 4.42 0.05 -1.62 16 6 C -0.12 -1.26 7.18 -36.84 -0.26 -1.52 16 7 C 0.61 7.28 7.79 -12.83 -0.10 7.18 16 8 O -0.51 -7.36 14.41 5.21 0.08 -7.29 16 9 N -0.70 -7.28 5.36 -54.31 -0.29 -7.57 16 10 C 0.12 1.31 4.21 -67.12 -0.28 1.03 16 11 C -0.14 -1.89 7.45 -25.82 -0.19 -2.08 16 12 C -0.12 -1.63 3.75 -89.71 -0.34 -1.97 16 13 C 0.17 3.15 6.10 -4.04 -0.02 3.12 16 14 N -0.76 -17.90 5.41 -59.91 -0.32 -18.22 16 15 C -0.24 -6.96 10.47 -15.06 -0.16 -7.12 16 16 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 17 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 18 N -0.94 -29.58 13.97 55.49 0.78 -28.80 16 19 Si 0.89 22.27 27.73 -169.99 -4.71 17.55 16 20 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 22 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 23 C -0.13 -1.44 7.39 -25.92 -0.19 -1.63 16 24 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.10 0.96 6.47 -51.93 -0.34 0.63 16 27 H 0.26 0.32 8.06 -52.49 -0.42 -0.10 16 28 H 0.41 3.42 8.51 -40.82 -0.35 3.07 16 29 H 0.12 1.38 7.50 -51.93 -0.39 0.99 16 30 H 0.09 1.20 7.90 -51.93 -0.41 0.79 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.03 0.50 7.85 -51.93 -0.41 0.09 16 35 H 0.36 8.37 5.53 -40.82 -0.23 8.14 16 36 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.86 8.07 -51.93 -0.42 0.44 16 LS Contribution 324.63 15.07 4.89 4.89 Total: -1.00 -34.90 324.63 -5.94 -40.84 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -5.09 Total: 6.33 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -1.19 Total: -1.05 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: 0.04 Total: -59.64 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.12 Total: -8.91 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.71 Total: 17.55 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.90 -5.94 -40.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485089122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.233 kcal (2) G-P(sol) polarization free energy of solvation -34.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds