Wall clock time and date at job start Tue Mar 31 2020 02:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35319 * 128.04021 * 2 1 4 4 O 1.34015 * 106.66930 * 179.97438 * 3 2 1 5 5 N 1.20904 * 111.84474 * 359.70016 * 4 3 2 6 6 C 1.30975 * 111.44096 * 0.49245 * 5 4 3 7 7 C 1.48336 * 126.93839 * 179.79234 * 6 5 4 8 8 O 1.21492 * 120.00111 * 179.68353 * 7 6 5 9 9 N 1.34773 * 119.99781 * 359.68967 * 7 6 5 10 10 C 1.46506 * 119.99969 * 180.02562 * 9 7 6 11 11 H 1.09003 * 112.84688 * 335.91529 * 10 9 7 12 12 C 1.53775 * 113.61467 * 107.22238 * 10 9 7 13 13 C 1.53784 * 87.08084 * 89.11917 * 12 10 9 14 14 H 1.09000 * 113.68950 * 270.86965 * 13 12 10 15 15 C 1.53000 * 113.61485 * 139.98033 * 13 12 10 16 16 N 1.46500 * 109.47121 * 87.50283 * 15 13 12 17 17 C 1.36931 * 119.99973 * 179.97438 * 16 15 13 18 18 H 1.08006 * 119.99956 * 0.02562 * 17 16 15 19 19 C 1.38815 * 120.00276 * 179.97438 * 17 16 15 20 20 N 1.31619 * 119.99805 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00354 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47360 * 59.99682 * 21 19 17 23 23 H 1.48498 * 109.47180 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46760 * 299.99849 * 21 19 17 25 25 C 1.53780 * 87.08215 * 25.42909 * 13 12 10 26 26 H 1.08995 * 109.47391 * 269.99750 * 1 2 3 27 27 H 1.09003 * 109.47312 * 30.00350 * 1 2 3 28 28 H 1.09001 * 109.46788 * 150.00312 * 1 2 3 29 29 H 1.08003 * 126.66204 * 359.97438 * 3 2 1 30 30 H 0.97005 * 120.00161 * 359.71951 * 9 7 6 31 31 H 1.09003 * 113.61318 * 203.66715 * 12 10 9 32 32 H 1.08997 * 113.62092 * 334.56858 * 12 10 9 33 33 H 1.08998 * 109.46843 * 207.50346 * 15 13 12 34 34 H 1.09000 * 109.47153 * 327.50211 * 15 13 12 35 35 H 0.96999 * 120.00235 * 359.97438 * 16 15 13 36 36 H 0.96994 * 119.99900 * 179.97438 * 20 19 17 37 37 H 1.08994 * 113.61843 * 220.02017 * 25 13 12 38 38 H 1.09002 * 113.60997 * 89.11463 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3408 1.0657 0.0000 4 8 3.5888 0.5774 0.0006 5 7 3.5988 -0.6316 0.0068 6 6 2.3837 -1.1205 0.0007 7 6 1.9992 -2.5531 0.0010 8 8 0.8256 -2.8672 0.0007 9 7 2.9519 -3.5065 0.0017 10 6 2.5722 -4.9215 0.0014 11 1 1.5765 -5.0926 0.4106 12 6 2.8165 -5.6245 -1.3442 13 6 4.2288 -5.9487 -0.8289 14 1 4.9652 -5.1777 -1.0553 15 6 4.7079 -7.3543 -1.1971 16 7 5.3487 -7.3224 -2.5142 17 6 5.8592 -8.4721 -3.0552 18 1 5.7890 -9.4024 -2.5112 19 6 6.4659 -8.4420 -4.3034 20 7 6.5502 -7.3085 -4.9670 21 14 7.1616 -10.0105 -5.0418 22 1 6.0743 -11.0100 -5.1956 23 1 7.7521 -9.7122 -6.3713 24 1 8.2123 -10.5560 -4.1452 25 6 3.6483 -5.8481 0.5916 26 1 -0.3634 0.0000 1.0276 27 1 -0.3634 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 2.0558 2.1075 -0.0004 30 1 3.8890 -3.2557 -0.0020 31 1 2.1939 -6.5063 -1.4955 32 1 2.8081 -4.9476 -2.1985 33 1 5.4247 -7.7004 -0.4526 34 1 3.8556 -8.0332 -1.2241 35 1 5.4115 -6.4869 -3.0029 36 1 6.9744 -7.2874 -5.8390 37 1 4.3113 -5.3516 1.3000 38 1 3.2530 -6.7910 0.9694 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485701532.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:43 Heat of formation + Delta-G solvation = 55.332104 kcal Electronic energy + Delta-G solvation = -20954.700349 eV Core-core repulsion = 17608.629566 eV Total energy + Delta-G solvation = -3346.070783 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.38726 -40.24935 -38.39698 -34.98044 -34.58664 -33.49873 -32.30734 -30.79979 -28.51208 -27.00091 -25.52789 -25.05603 -23.22833 -21.98169 -21.46518 -21.04885 -19.11550 -18.56203 -18.06933 -17.07063 -16.75152 -15.99334 -15.06135 -14.92776 -14.83666 -14.37707 -14.04857 -13.74306 -13.56246 -13.52386 -13.33036 -12.78449 -12.67909 -12.38173 -12.15103 -11.71756 -11.64531 -11.03038 -10.80236 -10.59474 -10.54807 -10.37214 -10.29326 -10.11006 -9.83865 -9.76972 -9.60296 -9.11294 -8.82526 -6.88208 -5.73422 -3.01803 0.86110 1.35865 2.67338 2.87200 2.95260 3.45886 3.49867 3.51221 3.67688 4.27448 4.53628 4.59477 4.64023 4.75296 4.79816 5.08030 5.09347 5.12385 5.31316 5.33713 5.49919 5.60271 5.66355 5.84326 5.92056 5.93931 5.99207 6.10875 6.21020 6.27722 6.41878 6.58112 6.79777 6.93932 7.23786 7.70584 7.71789 7.92838 8.45714 9.56460 10.15767 10.50186 11.49525 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.027680 B = 0.003058 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.314753 B = 9155.552636 C = 9632.173245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.151 4.151 3 C -0.068 4.068 4 O 0.126 5.874 5 N -0.328 5.328 6 C -0.029 4.029 7 C 0.601 3.399 8 O -0.522 6.522 9 N -0.692 5.692 10 C 0.114 3.886 11 H 0.103 0.897 12 C -0.138 4.138 13 C -0.115 4.115 14 H 0.088 0.912 15 C 0.163 3.837 16 N -0.732 5.732 17 C -0.240 4.240 18 H 0.069 0.931 19 C -0.015 4.015 20 N -0.934 5.934 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.137 4.137 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.224 0.776 30 H 0.408 0.592 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.019 0.981 34 H 0.021 0.979 35 H 0.383 0.617 36 H 0.255 0.745 37 H 0.070 0.930 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.150 17.643 13.426 24.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.156 4.156 3 C -0.149 4.149 4 O 0.050 5.950 5 N -0.028 5.028 6 C -0.189 4.189 7 C 0.385 3.615 8 O -0.396 6.396 9 N -0.343 5.343 10 C 0.009 3.991 11 H 0.121 0.879 12 C -0.176 4.176 13 C -0.133 4.133 14 H 0.106 0.894 15 C 0.035 3.965 16 N -0.376 5.376 17 C -0.371 4.371 18 H 0.087 0.913 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.739 3.261 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.176 4.176 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.107 0.893 29 H 0.240 0.760 30 H 0.244 0.756 31 H 0.112 0.888 32 H 0.087 0.913 33 H 0.036 0.964 34 H 0.038 0.962 35 H 0.217 0.783 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.752 16.587 13.409 23.886 hybrid contribution 0.230 -0.179 -0.731 0.787 sum -10.522 16.408 12.679 23.252 Atomic orbital electron populations 1.20228 0.86502 1.04009 1.03202 1.21385 0.99181 0.90060 1.04940 1.25806 0.82365 1.01350 1.05366 1.84786 1.29489 1.15175 1.65580 1.74196 1.21582 0.91696 1.15289 1.23487 0.89611 0.97168 1.08597 1.16824 0.85635 0.82274 0.76758 1.90771 1.17397 1.81593 1.49842 1.45566 1.09755 1.05757 1.73189 1.22048 0.99616 0.78605 0.98808 0.87896 1.23421 0.97422 1.00481 0.96299 1.22780 0.96300 0.99739 0.94503 0.89386 1.20630 0.94943 0.92248 0.88633 1.42346 1.69287 1.09339 1.16637 1.19202 1.29834 0.88368 0.99683 0.91283 1.24745 1.01875 0.96981 0.97489 1.69652 1.49617 1.24462 1.14580 0.86260 0.78846 0.82736 0.78308 1.21288 1.21697 1.21295 1.23318 0.97357 0.99493 0.97391 0.90540 0.90962 0.89350 0.75985 0.75646 0.88803 0.91254 0.96367 0.96168 0.78327 0.93502 0.91147 0.88410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.01 36.00 0.36 -0.28 16 2 C -0.15 -1.43 6.34 -104.12 -0.66 -2.09 16 3 C -0.07 -0.46 12.24 29.69 0.36 -0.10 16 4 O 0.13 1.20 11.18 17.25 0.19 1.39 16 5 N -0.33 -3.92 11.84 33.29 0.39 -3.53 16 6 C -0.03 -0.36 7.19 -82.53 -0.59 -0.95 16 7 C 0.60 8.39 7.85 -12.11 -0.10 8.29 16 8 O -0.52 -8.27 14.94 5.37 0.08 -8.19 16 9 N -0.69 -9.01 5.26 -53.80 -0.28 -9.29 16 10 C 0.11 1.50 4.32 -67.12 -0.29 1.21 16 11 H 0.10 1.36 7.47 -51.93 -0.39 0.97 16 12 C -0.14 -2.10 7.43 -25.92 -0.19 -2.30 16 13 C -0.11 -1.84 3.63 -89.81 -0.33 -2.16 16 14 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 15 C 0.16 3.30 6.10 -4.04 -0.02 3.28 16 16 N -0.73 -18.99 5.60 -59.91 -0.34 -19.33 16 17 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 18 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 19 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 20 N -0.93 -28.84 13.06 55.49 0.72 -28.12 16 21 Si 0.91 22.80 29.55 -169.99 -5.02 17.77 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 C -0.14 -1.71 7.39 -25.92 -0.19 -1.91 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 0.88 6.89 -51.93 -0.36 0.53 16 29 H 0.22 0.40 8.06 -52.48 -0.42 -0.02 16 30 H 0.41 4.99 8.46 -40.82 -0.35 4.65 16 31 H 0.09 1.43 7.90 -51.93 -0.41 1.02 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.02 0.41 7.84 -51.93 -0.41 0.01 16 35 H 0.38 10.48 7.67 -40.82 -0.31 10.16 16 36 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.10 1.12 8.10 -51.93 -0.42 0.70 16 LS Contribution 328.12 15.07 4.94 4.94 Total: -1.00 -33.85 328.12 -6.35 -40.20 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -5.15 Total: 8.71 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -1.90 Total: -4.57 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: 0.50 Total: -60.27 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: 0.27 Total: -6.80 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.85 -6.35 -40.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485701532.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.536 kcal (2) G-P(sol) polarization free energy of solvation -33.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds