Wall clock time and date at job start Tue Mar 31 2020 01:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35319 * 126.66571 * 2 1 4 4 C 1.42271 * 103.92108 * 179.97438 * 3 2 1 5 5 C 1.48326 * 126.94021 * 179.97438 * 4 3 2 6 6 O 1.21494 * 119.99985 * 0.02562 * 5 4 3 7 7 N 1.34784 * 120.00252 * 180.02562 * 5 4 3 8 8 C 1.46493 * 119.99864 * 179.72903 * 7 5 4 9 9 C 1.53001 * 109.47084 * 180.02562 * 8 7 5 10 10 H 1.09003 * 109.46949 * 294.99717 * 9 8 7 11 11 N 1.46499 * 109.47392 * 54.99694 * 9 8 7 12 12 C 1.36941 * 120.00177 * 205.00605 * 11 9 8 13 13 H 1.08001 * 119.99593 * 359.97438 * 12 11 9 14 14 C 1.38805 * 119.99910 * 180.02562 * 12 11 9 15 15 N 1.31617 * 120.00315 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99791 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47115 * 59.99918 * 16 14 12 18 18 H 1.48501 * 109.46898 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47149 * 299.99528 * 16 14 12 20 20 C 1.52997 * 109.47519 * 175.00001 * 9 8 7 21 21 C 1.53003 * 117.50025 * 248.74690 * 20 9 8 22 22 C 1.52997 * 117.50117 * 180.08541 * 20 9 8 23 23 N 1.30988 * 106.12363 * 0.26569 * 4 3 2 24 24 O 1.20905 * 111.43888 * 359.53286 * 23 4 3 25 25 H 1.08998 * 109.47694 * 89.99296 * 1 2 3 26 26 H 1.08999 * 109.47221 * 209.99985 * 1 2 3 27 27 H 1.09005 * 109.47143 * 329.99443 * 1 2 3 28 28 H 1.07999 * 128.03891 * 359.96152 * 3 2 1 29 29 H 0.97000 * 119.99339 * 0.02562 * 7 5 4 30 30 H 1.09007 * 109.47196 * 299.99538 * 8 7 5 31 31 H 1.09006 * 109.47678 * 59.99732 * 8 7 5 32 32 H 0.97000 * 119.99498 * 24.99864 * 11 9 8 33 33 H 0.96997 * 120.00360 * 179.97438 * 15 14 12 34 34 H 1.09006 * 115.54757 * 34.41089 * 20 9 8 35 35 H 1.09001 * 117.49296 * 359.97438 * 21 20 9 36 36 H 1.08991 * 117.50309 * 145.01577 * 21 20 9 37 37 H 1.08999 * 117.49717 * 214.97918 * 22 20 9 38 38 H 1.08999 * 117.49708 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3150 1.0854 0.0000 4 6 3.6271 0.5354 0.0006 5 6 4.9075 1.2841 0.0003 6 8 4.9008 2.4990 0.0000 7 7 6.0785 0.6166 0.0005 8 6 7.3431 1.3561 -0.0058 9 6 8.5115 0.3684 -0.0049 10 1 8.5110 -0.1941 0.9289 11 7 8.3701 -0.5565 -1.1321 12 6 8.9469 -1.7973 -1.0764 13 1 9.5064 -2.0938 -0.2015 14 6 8.8133 -2.6733 -2.1447 15 7 8.1318 -2.3118 -3.2111 16 14 9.6007 -4.3656 -2.0690 17 1 9.0455 -5.1187 -0.9158 18 1 9.3125 -5.1024 -3.3257 19 1 11.0695 -4.2212 -1.9051 20 6 9.8284 1.1359 -0.1371 21 6 10.6108 0.9769 -1.4423 22 6 11.1226 0.3201 -0.1578 23 7 3.4760 -0.7657 -0.0049 24 8 2.3072 -1.0750 0.0005 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5139 28 1 2.0301 2.1272 -0.0006 29 1 6.0838 -0.3534 0.0004 30 1 7.3952 1.9792 -0.8987 31 1 7.3995 1.9871 0.8813 32 1 7.8677 -0.2900 -1.9180 33 1 8.0387 -2.9238 -3.9578 34 1 9.8555 2.1105 0.3504 35 1 10.1875 0.3252 -2.2065 36 1 11.1529 1.8467 -1.8133 37 1 12.0012 0.7582 0.3157 38 1 11.0359 -0.7634 -0.0768 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490631101.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:22:03 Heat of formation + Delta-G solvation = 63.262597 kcal Electronic energy + Delta-G solvation = -21530.115943 eV Core-core repulsion = 18184.389051 eV Total energy + Delta-G solvation = -3345.726892 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.04514 -39.36994 -37.61546 -34.60127 -34.12824 -33.45121 -33.13184 -30.82991 -28.32053 -27.93199 -25.01266 -23.49324 -22.78730 -22.10890 -21.45205 -19.95803 -18.98534 -17.80933 -17.67301 -17.20421 -16.60175 -15.64046 -15.28665 -14.78143 -14.53352 -14.24728 -13.82869 -13.76299 -13.59307 -13.46524 -13.08955 -12.89317 -12.59007 -12.11439 -11.43999 -11.32215 -11.17450 -10.86877 -10.83975 -10.53873 -10.39875 -10.15075 -10.08611 -9.66848 -9.47600 -9.46910 -9.18299 -8.97499 -8.74259 -7.06902 -5.82267 -3.12947 1.21211 1.67372 2.91879 3.24429 3.38568 3.41149 3.46129 3.46760 4.08805 4.50209 4.50755 4.64242 4.88798 5.06676 5.14560 5.25610 5.34076 5.43834 5.48197 5.54706 5.59786 5.73228 5.83509 5.87333 5.94822 6.02948 6.04253 6.38473 6.41366 6.62539 6.69684 6.82253 6.99765 7.28082 7.65904 7.72740 8.10507 8.33968 8.36895 9.46675 9.99502 10.35530 11.39177 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.015968 B = 0.004962 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.047725 B = 5641.944554 C = 7079.018616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.043 4.043 3 C -0.185 4.185 4 C -0.023 4.023 5 C 0.594 3.406 6 O -0.538 6.538 7 N -0.694 5.694 8 C 0.118 3.882 9 C 0.191 3.809 10 H 0.058 0.942 11 N -0.717 5.717 12 C -0.242 4.242 13 H 0.071 0.929 14 C -0.006 4.006 15 N -0.928 5.928 16 Si 0.903 3.097 17 H -0.286 1.286 18 H -0.292 1.292 19 H -0.286 1.286 20 C -0.178 4.178 21 C -0.163 4.163 22 C -0.175 4.175 23 N -0.320 5.320 24 O 0.123 5.877 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.179 0.821 29 H 0.417 0.583 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.386 0.614 33 H 0.256 0.744 34 H 0.086 0.914 35 H 0.119 0.881 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.537 6.218 7.236 14.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.106 4.106 3 C -0.208 4.208 4 C -0.183 4.183 5 C 0.377 3.623 6 O -0.415 6.415 7 N -0.345 5.345 8 C -0.006 4.006 9 C 0.081 3.919 10 H 0.076 0.924 11 N -0.359 5.359 12 C -0.373 4.373 13 H 0.089 0.911 14 C -0.203 4.203 15 N -0.575 5.575 16 Si 0.734 3.266 17 H -0.213 1.213 18 H -0.218 1.218 19 H -0.212 1.212 20 C -0.200 4.200 21 C -0.200 4.200 22 C -0.212 4.212 23 N -0.020 5.020 24 O 0.046 5.954 25 H 0.107 0.893 26 H 0.103 0.897 27 H 0.110 0.890 28 H 0.196 0.804 29 H 0.255 0.745 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.221 0.779 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.137 0.863 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.508 5.910 7.253 14.069 hybrid contribution 0.114 -0.520 -0.359 0.642 sum -10.394 5.390 6.893 13.587 Atomic orbital electron populations 1.20332 0.83615 1.04681 1.04254 1.24487 0.96526 0.85702 1.03869 1.22399 0.89821 1.01358 1.07202 1.23578 0.96909 0.90113 1.07682 1.16873 0.81780 0.86264 0.77378 1.90755 1.86973 1.12540 1.51235 1.45892 1.04847 1.11973 1.71787 1.21704 0.82247 0.94789 1.01904 1.19994 0.89247 0.89559 0.93141 0.92416 1.42463 1.63459 1.13232 1.16741 1.19108 1.26710 0.90493 1.01009 0.91080 1.24709 1.00615 0.98421 0.96527 1.69645 1.44957 1.36272 1.06652 0.86334 0.79016 0.84483 0.76735 1.21267 1.21768 1.21234 1.23055 0.94458 0.99583 1.02860 1.22917 1.02668 1.01946 0.92444 1.22849 0.95594 1.00423 1.02290 1.74301 0.96805 1.15627 1.15250 1.84815 1.11208 1.33410 1.65939 0.89286 0.89696 0.88962 0.80401 0.74510 0.91226 0.91358 0.77943 0.93385 0.89556 0.86322 0.91252 0.90992 0.87918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.40 10.44 36.00 0.38 -0.02 16 2 C -0.04 -0.46 7.47 -35.35 -0.26 -0.73 16 3 C -0.19 -2.36 10.92 -39.07 -0.43 -2.79 16 4 C -0.02 -0.38 7.19 -82.53 -0.59 -0.98 16 5 C 0.59 10.87 7.85 -12.11 -0.10 10.78 16 6 O -0.54 -10.72 16.95 5.37 0.09 -10.63 16 7 N -0.69 -12.66 5.39 -61.09 -0.33 -12.99 16 8 C 0.12 2.06 5.22 -4.04 -0.02 2.04 16 9 C 0.19 3.62 2.86 -67.93 -0.19 3.43 16 10 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 11 N -0.72 -16.47 3.07 -53.43 -0.16 -16.63 16 12 C -0.24 -6.20 8.16 -15.06 -0.12 -6.33 16 13 H 0.07 1.79 6.91 -52.49 -0.36 1.43 16 14 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 15 N -0.93 -26.94 13.06 55.49 0.72 -26.21 16 16 Si 0.90 21.81 29.55 -169.99 -5.02 16.79 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 C -0.18 -3.13 5.70 -90.62 -0.52 -3.65 16 21 C -0.16 -3.08 9.74 -26.69 -0.26 -3.34 16 22 C -0.17 -3.15 9.87 -26.69 -0.26 -3.41 16 23 N -0.32 -5.36 11.84 33.29 0.39 -4.96 16 24 O 0.12 1.71 11.18 17.24 0.19 1.90 16 25 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.18 1.89 8.06 -52.49 -0.42 1.47 16 29 H 0.42 8.09 7.89 -40.82 -0.32 7.77 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.39 9.77 7.80 -40.82 -0.32 9.46 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.09 1.34 8.11 -51.93 -0.42 0.92 16 35 H 0.12 2.69 6.68 -51.93 -0.35 2.35 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.10 2.08 6.22 -51.93 -0.32 1.75 16 LS Contribution 328.35 15.07 4.95 4.95 Total: -1.00 -30.36 328.35 -6.68 -37.04 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -2.48 Total: -5.26 kcal Atomic # 7 Polarization: -61.42 SS G_CDS: 0.63 Total: -60.79 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.28 Total: -8.73 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.36 -6.68 -37.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490631101.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.300 kcal (2) G-P(sol) polarization free energy of solvation -30.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds