Wall clock time and date at job start Tue Mar 31 2020 01:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35319 * 126.66571 * 2 1 4 4 C 1.42271 * 103.92108 * 179.97438 * 3 2 1 5 5 C 1.48326 * 126.94021 * 179.97438 * 4 3 2 6 6 O 1.21494 * 119.99985 * 0.02562 * 5 4 3 7 7 N 1.34784 * 120.00252 * 180.02562 * 5 4 3 8 8 C 1.46493 * 119.99864 * 179.72903 * 7 5 4 9 9 C 1.53001 * 109.47084 * 180.02562 * 8 7 5 10 10 H 1.09003 * 109.46949 * 294.99717 * 9 8 7 11 11 N 1.46499 * 109.47392 * 54.99694 * 9 8 7 12 12 C 1.36941 * 120.00177 * 205.00605 * 11 9 8 13 13 H 1.08001 * 119.99593 * 359.97438 * 12 11 9 14 14 C 1.38805 * 119.99910 * 180.02562 * 12 11 9 15 15 N 1.31617 * 120.00315 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99791 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47115 * 59.99918 * 16 14 12 18 18 H 1.48501 * 109.46898 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47149 * 299.99528 * 16 14 12 20 20 C 1.52997 * 109.47519 * 175.00001 * 9 8 7 21 21 C 1.53003 * 117.50025 * 248.74690 * 20 9 8 22 22 C 1.52997 * 117.50117 * 180.08541 * 20 9 8 23 23 N 1.30988 * 106.12363 * 0.26569 * 4 3 2 24 24 O 1.20905 * 111.43888 * 359.53286 * 23 4 3 25 25 H 1.08998 * 109.47694 * 89.99296 * 1 2 3 26 26 H 1.08999 * 109.47221 * 209.99985 * 1 2 3 27 27 H 1.09005 * 109.47143 * 329.99443 * 1 2 3 28 28 H 1.07999 * 128.03891 * 359.96152 * 3 2 1 29 29 H 0.97000 * 119.99339 * 0.02562 * 7 5 4 30 30 H 1.09007 * 109.47196 * 299.99538 * 8 7 5 31 31 H 1.09006 * 109.47678 * 59.99732 * 8 7 5 32 32 H 0.97000 * 119.99498 * 24.99864 * 11 9 8 33 33 H 0.96997 * 120.00360 * 179.97438 * 15 14 12 34 34 H 1.09006 * 115.54757 * 34.41089 * 20 9 8 35 35 H 1.09001 * 117.49296 * 359.97438 * 21 20 9 36 36 H 1.08991 * 117.50309 * 145.01577 * 21 20 9 37 37 H 1.08999 * 117.49717 * 214.97918 * 22 20 9 38 38 H 1.08999 * 117.49708 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3150 1.0854 0.0000 4 6 3.6271 0.5354 0.0006 5 6 4.9075 1.2841 0.0003 6 8 4.9008 2.4990 0.0000 7 7 6.0785 0.6166 0.0005 8 6 7.3431 1.3561 -0.0058 9 6 8.5115 0.3684 -0.0049 10 1 8.5110 -0.1941 0.9289 11 7 8.3701 -0.5565 -1.1321 12 6 8.9469 -1.7973 -1.0764 13 1 9.5064 -2.0938 -0.2015 14 6 8.8133 -2.6733 -2.1447 15 7 8.1318 -2.3118 -3.2111 16 14 9.6007 -4.3656 -2.0690 17 1 9.0455 -5.1187 -0.9158 18 1 9.3125 -5.1024 -3.3257 19 1 11.0695 -4.2212 -1.9051 20 6 9.8284 1.1359 -0.1371 21 6 10.6108 0.9769 -1.4423 22 6 11.1226 0.3201 -0.1578 23 7 3.4760 -0.7657 -0.0049 24 8 2.3072 -1.0750 0.0005 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5139 28 1 2.0301 2.1272 -0.0006 29 1 6.0838 -0.3534 0.0004 30 1 7.3952 1.9792 -0.8987 31 1 7.3995 1.9871 0.8813 32 1 7.8677 -0.2900 -1.9180 33 1 8.0387 -2.9238 -3.9578 34 1 9.8555 2.1105 0.3504 35 1 10.1875 0.3252 -2.2065 36 1 11.1529 1.8467 -1.8133 37 1 12.0012 0.7582 0.3157 38 1 11.0359 -0.7634 -0.0768 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490631101.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:22:01 Heat of formation + Delta-G solvation = 43.063683 kcal Electronic energy + Delta-G solvation = -21530.991833 eV Core-core repulsion = 18184.389051 eV Total energy + Delta-G solvation = -3346.602782 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -46.16292 -40.82570 -39.17973 -36.06575 -35.19493 -35.12571 -34.29825 -32.60584 -29.99723 -28.68890 -26.44968 -25.32346 -24.02653 -23.44381 -22.91382 -21.35913 -20.46060 -19.29270 -18.93737 -18.59135 -17.91976 -17.10678 -16.85181 -16.35675 -16.19412 -15.66172 -15.32896 -15.04685 -14.64981 -14.59950 -14.34604 -13.94261 -13.77932 -13.30164 -13.01456 -12.86511 -12.69155 -12.64968 -12.37678 -12.17751 -11.99370 -11.65195 -11.56523 -11.52175 -11.04930 -10.87715 -10.64855 -10.40044 -10.20970 -9.03388 -7.91308 -5.19558 0.05414 0.67705 1.47527 1.48286 1.53745 1.83475 2.02310 2.14133 2.55964 2.90233 3.11485 3.43239 3.55420 3.81446 3.92996 3.94309 4.13648 4.25032 4.30015 4.35450 4.44776 4.55065 4.60501 4.79053 4.84186 4.85835 4.88302 4.96055 5.13948 5.16218 5.26386 5.32556 5.44430 5.63816 5.68000 6.27416 6.28238 6.86223 7.07431 7.36389 8.06463 8.31562 9.31122 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.015968 B = 0.004962 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.047725 B = 5641.944554 C = 7079.018616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.019 4.019 3 C -0.197 4.197 4 C -0.052 4.052 5 C 0.593 3.407 6 O -0.559 6.559 7 N -0.697 5.697 8 C 0.125 3.875 9 C 0.191 3.809 10 H 0.059 0.941 11 N -0.722 5.722 12 C -0.222 4.222 13 H 0.077 0.923 14 C -0.067 4.067 15 N -0.966 5.966 16 Si 0.959 3.041 17 H -0.281 1.281 18 H -0.302 1.302 19 H -0.280 1.280 20 C -0.167 4.167 21 C -0.173 4.173 22 C -0.169 4.169 23 N -0.355 5.355 24 O 0.123 5.877 25 H 0.106 0.894 26 H 0.101 0.899 27 H 0.117 0.883 28 H 0.198 0.802 29 H 0.411 0.589 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.373 0.627 33 H 0.247 0.753 34 H 0.120 0.880 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.388 7.056 8.764 16.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.082 4.082 3 C -0.220 4.220 4 C -0.210 4.210 5 C 0.377 3.623 6 O -0.437 6.437 7 N -0.347 5.347 8 C 0.001 3.999 9 C 0.082 3.918 10 H 0.076 0.924 11 N -0.362 5.362 12 C -0.354 4.354 13 H 0.094 0.906 14 C -0.259 4.259 15 N -0.616 5.616 16 Si 0.790 3.210 17 H -0.207 1.207 18 H -0.229 1.229 19 H -0.206 1.206 20 C -0.188 4.188 21 C -0.210 4.210 22 C -0.206 4.206 23 N -0.054 5.054 24 O 0.046 5.954 25 H 0.125 0.875 26 H 0.120 0.880 27 H 0.135 0.865 28 H 0.215 0.785 29 H 0.247 0.753 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.205 0.795 33 H 0.056 0.944 34 H 0.138 0.862 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.122 0.878 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.329 6.767 8.834 15.880 hybrid contribution 0.292 -0.731 -0.770 1.102 sum -11.037 6.036 8.063 14.942 Atomic orbital electron populations 1.20676 0.79433 1.06726 1.05930 1.25401 0.98312 0.83978 1.00535 1.22694 0.88414 1.02869 1.08004 1.23595 0.97376 0.90563 1.09465 1.17131 0.82348 0.86181 0.76618 1.90723 1.87411 1.13263 1.52314 1.45936 1.05334 1.11582 1.71862 1.21664 0.81454 0.94294 1.02468 1.20147 0.90779 0.89406 0.91490 0.92357 1.42521 1.63028 1.13278 1.17332 1.19391 1.24649 0.91036 1.00324 0.90565 1.25349 1.02231 1.01593 0.96751 1.69797 1.47447 1.37046 1.07354 0.85423 0.78416 0.81067 0.76125 1.20750 1.22860 1.20646 1.23020 0.93125 1.00651 1.02026 1.22778 1.03819 1.02404 0.91999 1.22842 0.97004 0.99126 1.01647 1.74296 0.98349 1.15999 1.16788 1.84766 1.10789 1.34536 1.65341 0.87525 0.88021 0.86503 0.78514 0.75277 0.92122 0.89116 0.79520 0.94390 0.86228 0.90592 0.88864 0.87822 0.90490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.44 71.23 0.74 0.21 16 2 C -0.02 -0.37 7.47 25.01 0.19 -0.19 16 3 C -0.20 -4.80 10.92 22.60 0.25 -4.55 16 4 C -0.05 -1.74 7.19 42.96 0.31 -1.43 16 5 C 0.59 21.96 7.85 86.93 0.68 22.64 16 6 O -0.56 -22.24 16.95 -3.70 -0.06 -22.30 16 7 N -0.70 -25.80 5.39 -465.49 -2.51 -28.30 16 8 C 0.12 4.30 5.22 86.38 0.45 4.75 16 9 C 0.19 7.10 2.86 44.99 0.13 7.23 16 10 H 0.06 2.19 8.08 -2.39 -0.02 2.17 16 11 N -0.72 -33.72 3.07 -322.94 -0.99 -34.71 16 12 C -0.22 -11.52 8.16 84.03 0.69 -10.84 16 13 H 0.08 3.83 6.91 -2.91 -0.02 3.81 16 14 C -0.07 -3.70 5.50 84.86 0.47 -3.24 16 15 N -0.97 -58.01 13.06 21.65 0.28 -57.73 16 16 Si 0.96 45.69 29.55 68.60 2.03 47.71 16 17 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 18 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 19 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 20 C -0.17 -5.55 5.70 -10.79 -0.06 -5.61 16 21 C -0.17 -6.37 9.74 30.62 0.30 -6.07 16 22 C -0.17 -5.78 9.87 30.62 0.30 -5.48 16 23 N -0.35 -12.02 11.84 -49.51 -0.59 -12.61 16 24 O 0.12 3.34 11.18 71.87 0.80 4.14 16 25 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.12 0.39 8.14 -2.38 -0.02 0.37 16 28 H 0.20 3.84 8.06 -2.91 -0.02 3.82 16 29 H 0.41 16.40 7.89 -92.71 -0.73 15.66 16 30 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 31 H 0.09 2.74 8.14 -2.38 -0.02 2.72 16 32 H 0.37 19.52 7.80 -92.71 -0.72 18.80 16 33 H 0.25 14.72 8.31 -92.71 -0.77 13.94 16 34 H 0.12 3.26 8.11 -2.38 -0.02 3.24 16 35 H 0.08 3.52 6.68 -2.39 -0.02 3.50 16 36 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 37 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 38 H 0.08 3.04 6.22 -2.39 -0.01 3.03 16 Total: -1.00 -67.88 328.35 3.05 -64.83 By element: Atomic # 1 Polarization: 41.88 SS G_CDS: -0.35 Total: 41.53 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 4.44 Total: -2.56 kcal Atomic # 7 Polarization: -129.55 SS G_CDS: -3.80 Total: -133.35 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: 0.74 Total: -18.16 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -67.88 3.05 -64.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490631101.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.898 kcal (2) G-P(sol) polarization free energy of solvation -67.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds