Wall clock time and date at job start Tue Mar 31 2020 01:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35319 * 126.66451 * 2 1 4 4 C 1.42271 * 103.92394 * 179.97438 * 3 2 1 5 5 C 1.48324 * 126.94059 * 179.97438 * 4 3 2 6 6 O 1.21503 * 119.99783 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00209 * 180.27477 * 5 4 3 8 8 C 1.46505 * 120.00093 * 179.71998 * 7 5 4 9 9 C 1.53005 * 109.46901 * 180.02562 * 8 7 5 10 10 H 1.08994 * 109.47158 * 65.00177 * 9 8 7 11 11 N 1.46502 * 109.46962 * 305.00478 * 9 8 7 12 12 C 1.36938 * 120.00011 * 155.00366 * 11 9 8 13 13 H 1.08009 * 119.99669 * 359.97438 * 12 11 9 14 14 C 1.38809 * 120.00097 * 179.97438 * 12 11 9 15 15 N 1.31619 * 120.00194 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99892 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46964 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.46839 * 120.00499 * 16 14 12 19 19 H 1.48500 * 109.47015 * 240.00791 * 16 14 12 20 20 C 1.53001 * 109.46913 * 185.00369 * 9 8 7 21 21 C 1.52995 * 117.50122 * 248.74912 * 20 9 8 22 22 C 1.52996 * 117.50073 * 180.08381 * 20 9 8 23 23 N 1.30987 * 106.11858 * 0.22629 * 4 3 2 24 24 O 1.20904 * 111.44059 * 359.59671 * 23 4 3 25 25 H 1.09004 * 109.46581 * 90.00078 * 1 2 3 26 26 H 1.08996 * 109.46860 * 210.00118 * 1 2 3 27 27 H 1.08993 * 109.47411 * 330.00162 * 1 2 3 28 28 H 1.08002 * 128.03450 * 359.97438 * 3 2 1 29 29 H 0.97000 * 120.00112 * 359.72885 * 7 5 4 30 30 H 1.08995 * 109.47192 * 300.00565 * 8 7 5 31 31 H 1.09001 * 109.46711 * 60.00587 * 8 7 5 32 32 H 0.97004 * 120.00429 * 334.99696 * 11 9 8 33 33 H 0.97001 * 119.99918 * 179.97438 * 15 14 12 34 34 H 1.09008 * 115.54721 * 34.41987 * 20 9 8 35 35 H 1.09003 * 117.49397 * 359.97438 * 21 20 9 36 36 H 1.08996 * 117.50225 * 145.02006 * 21 20 9 37 37 H 1.08993 * 117.50447 * 214.98113 * 22 20 9 38 38 H 1.09002 * 117.49239 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0855 0.0000 4 6 3.6272 0.5355 0.0006 5 6 4.9075 1.2843 0.0003 6 8 4.9007 2.4993 0.0000 7 7 6.0784 0.6169 -0.0046 8 6 7.3431 1.3566 -0.0110 9 6 8.5115 0.3688 -0.0164 10 1 8.5041 -0.1978 -0.9474 11 7 8.3784 -0.5511 1.1161 12 6 8.9550 -1.7921 1.0616 13 1 9.5074 -2.0927 0.1836 14 6 8.8293 -2.6634 2.1348 15 7 8.1556 -2.2972 3.2045 16 14 9.6152 -4.3565 2.0601 17 1 10.3103 -4.5226 0.7584 18 1 10.5962 -4.4960 3.1661 19 1 8.5641 -5.3966 2.1966 20 6 9.8293 1.1370 0.1027 21 6 10.7515 1.1514 -1.1180 22 6 11.1239 0.3217 0.1134 23 7 3.4761 -0.7656 -0.0041 24 8 2.3073 -1.0749 0.0006 25 1 -0.3632 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 2.0300 2.1272 -0.0004 29 1 6.0839 -0.3530 -0.0040 30 1 7.3931 1.9829 -0.9017 31 1 7.4014 1.9841 0.8783 32 1 7.8820 -0.2812 1.9045 33 1 8.0675 -2.9063 3.9543 34 1 9.7955 2.0358 0.7186 35 1 10.4196 0.6131 -2.0058 36 1 11.3247 2.0593 -1.3051 37 1 11.9419 0.6842 0.7358 38 1 11.0367 -0.7621 0.0360 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490631102.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:22:09 Heat of formation + Delta-G solvation = 38.596768 kcal Electronic energy + Delta-G solvation = -21407.906270 eV Core-core repulsion = 18061.109788 eV Total energy + Delta-G solvation = -3346.796482 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -46.16725 -40.82486 -39.05504 -36.22172 -35.29599 -35.16256 -34.29642 -32.71858 -29.91224 -28.69031 -26.46480 -25.24023 -23.94381 -23.28716 -23.02063 -21.54698 -20.77055 -19.32893 -18.94116 -18.58544 -17.90087 -17.10350 -16.89831 -16.30311 -16.09366 -15.63188 -15.36019 -14.98795 -14.91172 -14.58241 -14.33761 -13.94143 -13.79506 -13.30528 -13.02255 -12.97636 -12.74289 -12.45143 -12.37704 -12.29022 -11.98322 -11.77704 -11.56988 -11.56124 -11.03882 -10.94223 -10.79859 -10.40130 -10.22528 -9.04224 -7.92273 -5.20424 0.04946 0.67500 1.46247 1.47236 1.55796 1.82796 2.01356 2.13635 2.54820 2.89618 3.05827 3.44402 3.55275 3.72056 3.93966 3.94616 4.11440 4.16485 4.29113 4.34553 4.36381 4.52543 4.61523 4.77237 4.79390 4.84057 4.87923 4.89376 5.06190 5.14519 5.26415 5.31437 5.39373 5.45621 5.58829 6.26338 6.27265 6.85230 7.07094 7.35213 8.05399 8.30517 9.31034 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.014728 B = 0.004995 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.620651 B = 5604.756864 C = 7164.374999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.019 4.019 3 C -0.197 4.197 4 C -0.052 4.052 5 C 0.593 3.407 6 O -0.559 6.559 7 N -0.697 5.697 8 C 0.125 3.875 9 C 0.196 3.804 10 H 0.056 0.944 11 N -0.725 5.725 12 C -0.220 4.220 13 H 0.078 0.922 14 C -0.071 4.071 15 N -0.968 5.968 16 Si 0.962 3.038 17 H -0.265 1.265 18 H -0.298 1.298 19 H -0.299 1.299 20 C -0.173 4.173 21 C -0.160 4.160 22 C -0.174 4.174 23 N -0.355 5.355 24 O 0.124 5.876 25 H 0.111 0.889 26 H 0.099 0.901 27 H 0.114 0.886 28 H 0.198 0.802 29 H 0.411 0.589 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.371 0.629 33 H 0.247 0.753 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.340 7.001 -9.629 17.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.082 4.082 3 C -0.220 4.220 4 C -0.210 4.210 5 C 0.377 3.623 6 O -0.437 6.437 7 N -0.347 5.347 8 C 0.001 3.999 9 C 0.087 3.913 10 H 0.074 0.926 11 N -0.365 5.365 12 C -0.351 4.351 13 H 0.096 0.904 14 C -0.264 4.264 15 N -0.619 5.619 16 Si 0.792 3.208 17 H -0.189 1.189 18 H -0.226 1.226 19 H -0.226 1.226 20 C -0.194 4.194 21 C -0.198 4.198 22 C -0.211 4.211 23 N -0.054 5.054 24 O 0.046 5.954 25 H 0.129 0.871 26 H 0.118 0.882 27 H 0.133 0.867 28 H 0.215 0.785 29 H 0.247 0.753 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.203 0.797 33 H 0.056 0.944 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.128 0.872 37 H 0.106 0.894 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.279 6.715 -9.725 16.336 hybrid contribution 0.306 -0.666 0.897 1.159 sum -10.973 6.050 -8.827 15.327 Atomic orbital electron populations 1.20678 0.79412 1.06577 1.06089 1.25404 0.98318 0.83969 1.00517 1.22693 0.88391 1.02880 1.08007 1.23584 0.97352 0.90569 1.09498 1.17135 0.82342 0.86189 0.76601 1.90726 1.87413 1.13253 1.52306 1.45929 1.05327 1.11585 1.71899 1.21679 0.81474 0.94290 1.02475 1.20168 0.90593 0.89238 0.91302 0.92642 1.42577 1.63402 1.13451 1.17036 1.19502 1.24706 0.90930 0.99989 0.90413 1.25407 1.02425 1.01853 0.96672 1.69822 1.47946 1.37085 1.07093 0.85237 0.77348 0.80774 0.77423 1.18945 1.22592 1.22619 1.22880 0.92758 1.01156 1.02607 1.23041 1.02702 1.02293 0.91726 1.22740 0.98114 0.98481 1.01760 1.74295 0.98358 1.15986 1.16800 1.84763 1.10778 1.34534 1.65324 0.87057 0.88236 0.86733 0.78505 0.75271 0.89171 0.92117 0.79675 0.94376 0.88450 0.88708 0.87235 0.89380 0.90240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.45 71.24 0.74 0.22 16 2 C -0.02 -0.37 7.47 25.01 0.19 -0.18 16 3 C -0.20 -4.80 10.92 22.60 0.25 -4.55 16 4 C -0.05 -1.74 7.19 42.96 0.31 -1.43 16 5 C 0.59 22.09 7.85 86.93 0.68 22.77 16 6 O -0.56 -22.35 16.95 -3.73 -0.06 -22.41 16 7 N -0.70 -26.05 5.39 -465.49 -2.51 -28.56 16 8 C 0.12 4.36 5.22 86.38 0.45 4.81 16 9 C 0.20 7.38 2.70 44.99 0.12 7.50 16 10 H 0.06 2.10 7.84 -2.39 -0.02 2.09 16 11 N -0.73 -34.68 4.54 -322.93 -1.47 -36.15 16 12 C -0.22 -11.55 8.63 84.03 0.73 -10.82 16 13 H 0.08 3.94 6.91 -2.91 -0.02 3.92 16 14 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 15 N -0.97 -58.94 13.06 21.65 0.28 -58.65 16 16 Si 0.96 45.94 29.55 68.60 2.03 47.96 16 17 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 18 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 19 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 20 C -0.17 -5.82 5.36 -10.80 -0.06 -5.88 16 21 C -0.16 -4.41 10.18 30.62 0.31 -4.10 16 22 C -0.17 -5.97 9.78 30.62 0.30 -5.67 16 23 N -0.35 -12.04 11.84 -49.52 -0.59 -12.63 16 24 O 0.12 3.35 11.18 71.96 0.80 4.16 16 25 H 0.11 0.44 8.14 -2.38 -0.02 0.42 16 26 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.20 3.85 8.06 -2.91 -0.02 3.83 16 29 H 0.41 16.53 7.90 -92.71 -0.73 15.80 16 30 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 31 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.37 19.81 7.80 -92.71 -0.72 19.08 16 33 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 34 H 0.10 3.18 8.11 -2.38 -0.02 3.16 16 35 H 0.09 2.49 8.05 -2.39 -0.02 2.47 16 36 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 38 H 0.08 3.15 6.23 -2.39 -0.01 3.13 16 Total: -1.00 -69.26 331.27 2.62 -66.63 By element: Atomic # 1 Polarization: 40.90 SS G_CDS: -0.36 Total: 40.54 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 4.49 Total: -0.90 kcal Atomic # 7 Polarization: -131.71 SS G_CDS: -4.28 Total: -135.99 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: 0.74 Total: -18.25 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.96 kcal Total: -69.26 2.62 -66.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490631102.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.231 kcal (2) G-P(sol) polarization free energy of solvation -69.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds