Wall clock time and date at job start Tue Mar 31 2020 01:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30016 * 127.33332 * 2 1 4 4 O 1.20656 * 112.30041 * 179.97438 * 3 2 1 5 5 C 1.33499 * 113.15795 * 359.75713 * 4 3 2 6 6 C 1.37362 * 106.33709 * 0.38708 * 5 4 3 7 7 C 1.47402 * 128.56305 * 179.91214 * 6 5 4 8 8 O 1.21603 * 120.00063 * 179.67612 * 7 6 5 9 9 N 1.34777 * 119.99679 * 359.67301 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72400 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 H 1.08992 * 109.46993 * 295.00086 * 11 10 9 13 13 N 1.46506 * 109.46943 * 54.99919 * 11 10 9 14 14 C 1.36929 * 119.99909 * 205.00011 * 13 11 10 15 15 H 1.08006 * 120.00094 * 0.02562 * 14 13 11 16 16 C 1.38816 * 120.00176 * 180.02562 * 14 13 11 17 17 N 1.31615 * 119.99668 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00011 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47263 * 59.99982 * 18 16 14 20 20 H 1.48501 * 109.46944 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.47333 * 300.00103 * 18 16 14 22 22 C 1.52995 * 109.47195 * 174.99817 * 11 10 9 23 23 C 1.52999 * 117.50225 * 248.74775 * 22 11 10 24 24 C 1.52999 * 117.49761 * 180.08552 * 22 11 10 25 25 H 1.09002 * 109.47085 * 270.00194 * 1 2 3 26 26 H 1.09001 * 109.46971 * 30.00250 * 1 2 3 27 27 H 1.09004 * 109.47043 * 150.00089 * 1 2 3 28 28 H 1.07993 * 126.83299 * 180.30026 * 5 4 3 29 29 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 30 30 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 31 31 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 32 32 H 0.97002 * 119.99781 * 25.00223 * 13 11 10 33 33 H 0.96996 * 119.99816 * 180.02562 * 17 16 14 34 34 H 1.09006 * 115.55266 * 34.42181 * 22 11 10 35 35 H 1.08993 * 117.49781 * 359.97438 * 23 22 11 36 36 H 1.09000 * 117.50138 * 145.02405 * 23 22 11 37 37 H 1.09009 * 117.50018 * 214.98040 * 24 22 11 38 38 H 1.08997 * 117.49907 * 0.02562 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 0.0005 5 6 3.6495 -0.6007 0.0061 6 6 2.3992 -1.1696 0.0006 7 6 2.0401 -2.5992 0.0016 8 8 0.8706 -2.9323 0.0020 9 7 3.0080 -3.5371 0.0020 10 6 2.6511 -4.9579 0.0091 11 6 3.9259 -5.8040 0.0150 12 1 4.4698 -5.6479 -0.9166 13 7 4.7696 -5.4079 1.1453 14 6 6.1222 -5.6154 1.0958 15 1 6.5672 -6.0706 0.2233 16 6 6.9216 -5.2406 2.1670 17 7 6.3793 -4.6863 3.2305 18 14 8.7669 -5.5229 2.0991 19 1 9.3392 -4.7805 0.9474 20 1 9.3882 -5.0397 3.3583 21 1 9.0401 -6.9737 1.9379 22 6 3.5561 -7.2826 0.1481 23 6 3.9216 -7.9873 1.4560 24 6 4.7008 -8.2974 0.1754 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 4.5966 -1.1195 0.0122 29 1 3.9409 -3.2714 0.0020 30 1 2.0632 -5.1805 0.8996 31 1 2.0653 -5.1899 -0.8804 32 1 4.3700 -4.9988 1.9288 33 1 6.9379 -4.4241 3.9789 34 1 2.6300 -7.5817 -0.3430 35 1 4.4260 -7.3976 2.2215 36 1 3.2363 -8.7502 1.8253 37 1 4.5277 -9.2643 -0.2973 38 1 5.7173 -7.9116 0.0989 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490699288.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:40 Heat of formation + Delta-G solvation = 59.835233 kcal Electronic energy + Delta-G solvation = -21697.834848 eV Core-core repulsion = 18351.959335 eV Total energy + Delta-G solvation = -3345.875513 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.86960 -39.36658 -37.65382 -34.69103 -34.35554 -33.36249 -32.18070 -30.77798 -28.84451 -28.12035 -24.91826 -23.56866 -22.46047 -21.53873 -21.26001 -20.24519 -19.22278 -18.16211 -17.68698 -17.27853 -16.38638 -15.77042 -15.31235 -14.79458 -14.72111 -14.41075 -13.71609 -13.62546 -13.32003 -13.26325 -13.02773 -12.91581 -12.45143 -12.13892 -11.37921 -11.32411 -11.22118 -10.93792 -10.90899 -10.58525 -10.21187 -9.97562 -9.89715 -9.73843 -9.71790 -9.51739 -9.23196 -9.05388 -8.75289 -7.15622 -5.91256 -3.22089 1.12690 1.80494 2.96339 3.33669 3.37007 3.39909 3.41375 3.46449 4.06184 4.32784 4.43159 4.58041 4.90553 5.10006 5.29087 5.37707 5.39690 5.50052 5.51668 5.59785 5.68626 5.69969 5.79085 5.91025 5.98028 6.01043 6.12647 6.34240 6.37197 6.58675 6.65456 6.78901 6.94730 7.22737 7.58068 7.76140 8.19804 8.25599 8.39310 9.38145 9.91061 10.27422 11.29870 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016265 B = 0.005145 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.096634 B = 5441.341711 C = 6819.071483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.067 3.933 3 N -0.365 5.365 4 O 0.093 5.907 5 C 0.003 3.997 6 C -0.252 4.252 7 C 0.592 3.408 8 O -0.543 6.543 9 N -0.704 5.704 10 C 0.120 3.880 11 C 0.191 3.809 12 H 0.058 0.942 13 N -0.718 5.718 14 C -0.243 4.243 15 H 0.071 0.929 16 C -0.006 4.006 17 N -0.928 5.928 18 Si 0.902 3.098 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.286 1.286 22 C -0.178 4.178 23 C -0.163 4.163 24 C -0.175 4.175 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.230 0.770 29 H 0.409 0.591 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.386 0.614 33 H 0.257 0.743 34 H 0.086 0.914 35 H 0.118 0.882 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.766 3.929 -7.281 10.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.096 4.096 3 N -0.074 5.074 4 O 0.035 5.965 5 C -0.080 4.080 6 C -0.260 4.260 7 C 0.378 3.622 8 O -0.422 6.422 9 N -0.355 5.355 10 C -0.004 4.004 11 C 0.081 3.919 12 H 0.076 0.924 13 N -0.360 5.360 14 C -0.374 4.374 15 H 0.089 0.911 16 C -0.203 4.203 17 N -0.575 5.575 18 Si 0.733 3.267 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.212 1.212 22 C -0.200 4.200 23 C -0.200 4.200 24 C -0.212 4.212 25 H 0.101 0.899 26 H 0.093 0.907 27 H 0.114 0.886 28 H 0.246 0.754 29 H 0.245 0.755 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.221 0.779 33 H 0.067 0.933 34 H 0.104 0.896 35 H 0.137 0.863 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.567 4.969 -7.306 11.633 hybrid contribution 1.475 -0.981 0.402 1.816 sum -6.092 3.989 -6.904 10.034 Atomic orbital electron populations 1.20244 0.85040 1.04136 1.03837 1.24845 0.98873 0.86484 0.99381 1.73651 0.89357 1.23720 1.20668 1.84555 1.21460 1.23248 1.67246 1.26596 1.00721 0.83743 0.96905 1.22405 0.92729 0.95822 1.15015 1.16812 0.85559 0.83054 0.76804 1.90748 1.18351 1.82055 1.51036 1.45802 1.09792 1.06441 1.73465 1.21635 0.98037 0.78877 1.01822 1.20004 0.89489 0.89435 0.93013 0.92401 1.42481 1.03914 1.72711 1.16863 1.19116 0.83030 1.34184 1.01064 0.91076 1.24707 0.97776 1.01297 0.96483 1.69641 1.34594 1.46611 1.06684 0.86354 0.85676 0.77906 0.76731 1.21270 1.21771 1.21237 1.23058 0.98339 0.95818 1.02773 1.22914 1.02633 1.01993 0.92437 1.22853 0.97913 0.98076 1.02363 0.89867 0.90693 0.88630 0.75399 0.75490 0.91374 0.91530 0.77918 0.93315 0.89577 0.86347 0.91267 0.91004 0.87929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 10.14 36.01 0.37 -0.51 16 2 C 0.07 0.95 7.58 -79.77 -0.60 0.34 16 3 N -0.37 -5.27 12.01 34.78 0.42 -4.86 16 4 O 0.09 1.23 11.06 18.64 0.21 1.44 16 5 C 0.00 0.03 11.85 30.41 0.36 0.39 16 6 C -0.25 -3.62 6.47 -102.89 -0.67 -4.28 16 7 C 0.59 9.50 7.81 -12.53 -0.10 9.40 16 8 O -0.54 -9.99 15.70 5.27 0.08 -9.90 16 9 N -0.70 -10.73 5.38 -61.39 -0.33 -11.06 16 10 C 0.12 1.89 5.22 -4.04 -0.02 1.87 16 11 C 0.19 3.27 2.86 -67.93 -0.19 3.08 16 12 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 13 N -0.72 -14.95 3.08 -53.42 -0.16 -15.11 16 14 C -0.24 -5.73 8.15 -15.06 -0.12 -5.85 16 15 H 0.07 1.66 6.91 -52.48 -0.36 1.30 16 16 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 17 N -0.93 -25.23 13.06 55.49 0.72 -24.51 16 18 Si 0.90 20.52 29.55 -169.99 -5.02 15.50 16 19 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 22 C -0.18 -2.94 5.70 -90.62 -0.52 -3.45 16 23 C -0.16 -2.92 9.74 -26.69 -0.26 -3.18 16 24 C -0.18 -2.99 9.87 -26.69 -0.26 -3.25 16 25 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.10 1.18 7.11 -51.93 -0.37 0.81 16 28 H 0.23 2.04 7.68 -52.49 -0.40 1.64 16 29 H 0.41 6.02 7.32 -40.82 -0.30 5.72 16 30 H 0.07 1.16 8.14 -51.92 -0.42 0.73 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.39 8.94 7.80 -40.82 -0.32 8.62 16 33 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.09 1.26 8.11 -51.93 -0.42 0.84 16 35 H 0.12 2.56 6.68 -51.93 -0.35 2.21 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 38 H 0.10 1.96 6.22 -51.93 -0.32 1.64 16 LS Contribution 325.15 15.07 4.90 4.90 Total: -1.00 -28.24 325.15 -6.24 -34.48 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -4.93 Total: 14.82 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -2.12 Total: -5.70 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: 0.65 Total: -55.53 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.29 Total: -8.47 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.24 -6.24 -34.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490699288.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.314 kcal (2) G-P(sol) polarization free energy of solvation -28.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds