Wall clock time and date at job start Tue Mar 31 2020 01:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30016 * 127.33332 * 2 1 4 4 O 1.20656 * 112.30041 * 179.97438 * 3 2 1 5 5 C 1.33499 * 113.15795 * 359.75713 * 4 3 2 6 6 C 1.37362 * 106.33709 * 0.38708 * 5 4 3 7 7 C 1.47402 * 128.56305 * 179.91214 * 6 5 4 8 8 O 1.21603 * 120.00063 * 179.67612 * 7 6 5 9 9 N 1.34777 * 119.99679 * 359.67301 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72400 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 H 1.08992 * 109.46993 * 295.00086 * 11 10 9 13 13 N 1.46506 * 109.46943 * 54.99919 * 11 10 9 14 14 C 1.36929 * 119.99909 * 205.00011 * 13 11 10 15 15 H 1.08006 * 120.00094 * 0.02562 * 14 13 11 16 16 C 1.38816 * 120.00176 * 180.02562 * 14 13 11 17 17 N 1.31615 * 119.99668 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00011 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47263 * 59.99982 * 18 16 14 20 20 H 1.48501 * 109.46944 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.47333 * 300.00103 * 18 16 14 22 22 C 1.52995 * 109.47195 * 174.99817 * 11 10 9 23 23 C 1.52999 * 117.50225 * 248.74775 * 22 11 10 24 24 C 1.52999 * 117.49761 * 180.08552 * 22 11 10 25 25 H 1.09002 * 109.47085 * 270.00194 * 1 2 3 26 26 H 1.09001 * 109.46971 * 30.00250 * 1 2 3 27 27 H 1.09004 * 109.47043 * 150.00089 * 1 2 3 28 28 H 1.07993 * 126.83299 * 180.30026 * 5 4 3 29 29 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 30 30 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 31 31 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 32 32 H 0.97002 * 119.99781 * 25.00223 * 13 11 10 33 33 H 0.96996 * 119.99816 * 180.02562 * 17 16 14 34 34 H 1.09006 * 115.55266 * 34.42181 * 22 11 10 35 35 H 1.08993 * 117.49781 * 359.97438 * 23 22 11 36 36 H 1.09000 * 117.50138 * 145.02405 * 23 22 11 37 37 H 1.09009 * 117.50018 * 214.98040 * 24 22 11 38 38 H 1.08997 * 117.49907 * 0.02562 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 0.0005 5 6 3.6495 -0.6007 0.0061 6 6 2.3992 -1.1696 0.0006 7 6 2.0401 -2.5992 0.0016 8 8 0.8706 -2.9323 0.0020 9 7 3.0080 -3.5371 0.0020 10 6 2.6511 -4.9579 0.0091 11 6 3.9259 -5.8040 0.0150 12 1 4.4698 -5.6479 -0.9166 13 7 4.7696 -5.4079 1.1453 14 6 6.1222 -5.6154 1.0958 15 1 6.5672 -6.0706 0.2233 16 6 6.9216 -5.2406 2.1670 17 7 6.3793 -4.6863 3.2305 18 14 8.7669 -5.5229 2.0991 19 1 9.3392 -4.7805 0.9474 20 1 9.3882 -5.0397 3.3583 21 1 9.0401 -6.9737 1.9379 22 6 3.5561 -7.2826 0.1481 23 6 3.9216 -7.9873 1.4560 24 6 4.7008 -8.2974 0.1754 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 4.5966 -1.1195 0.0122 29 1 3.9409 -3.2714 0.0020 30 1 2.0632 -5.1805 0.8996 31 1 2.0653 -5.1899 -0.8804 32 1 4.3700 -4.9988 1.9288 33 1 6.9379 -4.4241 3.9789 34 1 2.6300 -7.5817 -0.3430 35 1 4.4260 -7.3976 2.2215 36 1 3.2363 -8.7502 1.8253 37 1 4.5277 -9.2643 -0.2973 38 1 5.7173 -7.9116 0.0989 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490699288.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:40 Heat of formation + Delta-G solvation = 42.245895 kcal Electronic energy + Delta-G solvation = -21698.597579 eV Core-core repulsion = 18351.959335 eV Total energy + Delta-G solvation = -3346.638244 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.93637 -40.65850 -39.09019 -35.97391 -35.46434 -35.06125 -33.36987 -32.33868 -30.04308 -29.44158 -26.22634 -25.25030 -23.78652 -22.92715 -22.31643 -21.47144 -20.59476 -19.46786 -18.93473 -18.75420 -17.55222 -17.06489 -16.74720 -16.31144 -16.07580 -15.79677 -15.23554 -15.06491 -14.50704 -14.48427 -14.22957 -14.07461 -13.67573 -13.41509 -12.91829 -12.80466 -12.61535 -12.58067 -12.34826 -12.12798 -11.94100 -11.55946 -11.25174 -10.99468 -10.97044 -10.80523 -10.79842 -10.58929 -10.02530 -8.96214 -7.85136 -5.12449 0.07160 0.72388 1.52900 1.55474 1.59351 1.89091 2.16750 2.32112 2.61751 3.01863 3.16622 3.32221 3.50228 3.85315 3.90887 3.95863 4.05348 4.31129 4.37496 4.43631 4.53530 4.59768 4.62068 4.62433 4.72781 4.77976 4.96262 4.99942 5.17051 5.22100 5.27436 5.43454 5.53408 5.70576 5.71330 6.34670 6.52150 7.13138 7.17774 7.43991 8.14298 8.39829 9.36766 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016265 B = 0.005145 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.096634 B = 5441.341711 C = 6819.071483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.059 3.941 3 N -0.380 5.380 4 O 0.092 5.908 5 C 0.029 3.971 6 C -0.280 4.280 7 C 0.594 3.406 8 O -0.570 6.570 9 N -0.700 5.700 10 C 0.129 3.871 11 C 0.192 3.808 12 H 0.065 0.935 13 N -0.720 5.720 14 C -0.217 4.217 15 H 0.077 0.923 16 C -0.062 4.062 17 N -0.963 5.963 18 Si 0.953 3.047 19 H -0.277 1.277 20 H -0.306 1.306 21 H -0.287 1.287 22 C -0.167 4.167 23 C -0.175 4.175 24 C -0.171 4.171 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.259 0.741 29 H 0.412 0.588 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.374 0.626 33 H 0.246 0.754 34 H 0.116 0.884 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.935 3.472 -8.893 11.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.104 4.104 3 N -0.090 5.090 4 O 0.036 5.964 5 C -0.054 4.054 6 C -0.288 4.288 7 C 0.381 3.619 8 O -0.452 6.452 9 N -0.350 5.350 10 C 0.005 3.995 11 C 0.083 3.917 12 H 0.083 0.917 13 N -0.360 5.360 14 C -0.349 4.349 15 H 0.095 0.905 16 C -0.255 4.255 17 N -0.614 5.614 18 Si 0.784 3.216 19 H -0.203 1.203 20 H -0.234 1.234 21 H -0.214 1.214 22 C -0.188 4.188 23 C -0.212 4.212 24 C -0.208 4.208 25 H 0.108 0.892 26 H 0.111 0.889 27 H 0.106 0.894 28 H 0.275 0.725 29 H 0.249 0.751 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.207 0.793 33 H 0.055 0.945 34 H 0.134 0.866 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.118 0.882 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.726 4.498 -8.972 12.665 hybrid contribution 1.495 -0.882 0.843 1.930 sum -6.231 3.616 -8.128 10.861 Atomic orbital electron populations 1.20302 0.83796 1.04637 1.04378 1.25246 0.99928 0.86367 0.98829 1.73653 0.89722 1.24041 1.21597 1.84543 1.21127 1.23704 1.67050 1.27095 1.01079 0.83156 0.94036 1.22335 0.93883 0.95111 1.17433 1.16966 0.85152 0.83693 0.76076 1.90729 1.19380 1.82590 1.52461 1.45737 1.09850 1.06261 1.73194 1.21525 0.97085 0.78863 1.02016 1.20148 0.89617 0.90243 0.91691 0.91697 1.42530 1.03437 1.72549 1.17462 1.19365 0.84136 1.31149 1.00242 0.90538 1.25235 1.00614 1.02805 0.96803 1.69776 1.35121 1.49199 1.07331 0.85525 0.82508 0.77460 0.76078 1.20335 1.23351 1.21433 1.23071 0.99295 0.94876 1.01605 1.22771 1.03580 1.02738 0.92113 1.22842 0.96763 0.99485 1.01681 0.89245 0.88856 0.89392 0.72505 0.75124 0.92726 0.89720 0.79309 0.94458 0.86648 0.90403 0.89319 0.88234 0.90236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.67 10.14 71.24 0.72 -0.94 16 2 C 0.06 1.62 7.58 45.16 0.34 1.96 16 3 N -0.38 -10.56 12.01 -44.78 -0.54 -11.10 16 4 O 0.09 2.31 11.06 76.93 0.85 3.16 16 5 C 0.03 0.64 11.85 67.61 0.80 1.44 16 6 C -0.28 -7.73 6.47 -18.74 -0.12 -7.85 16 7 C 0.59 18.48 7.81 86.66 0.68 19.16 16 8 O -0.57 -20.62 15.70 -4.04 -0.06 -20.68 16 9 N -0.70 -20.35 5.38 -466.39 -2.51 -22.86 16 10 C 0.13 3.82 5.22 86.38 0.45 4.27 16 11 C 0.19 6.19 2.86 44.99 0.13 6.31 16 12 H 0.07 2.06 8.08 -2.39 -0.02 2.04 16 13 N -0.72 -29.45 3.08 -322.94 -0.99 -30.44 16 14 C -0.22 -10.06 8.15 84.04 0.69 -9.38 16 15 H 0.08 3.45 6.91 -2.91 -0.02 3.43 16 16 C -0.06 -3.13 5.50 84.86 0.47 -2.66 16 17 N -0.96 -53.24 13.06 21.65 0.28 -52.96 16 18 Si 0.95 42.26 29.55 68.60 2.03 44.29 16 19 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 20 H -0.31 -14.25 7.11 99.48 0.71 -13.54 16 21 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 22 C -0.17 -5.07 5.70 -10.80 -0.06 -5.13 16 23 C -0.17 -6.03 9.74 30.62 0.30 -5.73 16 24 C -0.17 -5.41 9.87 30.62 0.30 -5.11 16 25 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.09 2.12 7.11 -2.39 -0.02 2.11 16 28 H 0.26 3.94 7.68 -2.91 -0.02 3.92 16 29 H 0.41 11.46 7.32 -92.71 -0.68 10.78 16 30 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 31 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.37 17.36 7.80 -92.71 -0.72 16.64 16 33 H 0.25 13.67 8.31 -92.71 -0.77 12.90 16 34 H 0.12 2.91 8.11 -2.38 -0.02 2.89 16 35 H 0.08 3.39 6.68 -2.39 -0.02 3.37 16 36 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 37 H 0.10 2.62 8.14 -2.38 -0.02 2.60 16 38 H 0.08 2.91 6.22 -2.39 -0.01 2.89 16 Total: -1.00 -60.45 325.15 3.45 -57.00 By element: Atomic # 1 Polarization: 37.56 SS G_CDS: -0.30 Total: 37.26 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: 4.69 Total: -3.67 kcal Atomic # 7 Polarization: -113.60 SS G_CDS: -3.76 Total: -117.36 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: 0.79 Total: -17.53 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -60.45 3.45 -57.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490699288.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.247 kcal (2) G-P(sol) polarization free energy of solvation -60.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds