Wall clock time and date at job start Tue Mar 31 2020 01:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30013 * 127.33065 * 2 1 4 4 O 1.20661 * 112.29570 * 179.97438 * 3 2 1 5 5 C 1.33493 * 113.15824 * 0.02562 * 4 3 2 6 6 C 1.37360 * 106.34237 * 359.73602 * 5 4 3 7 7 C 1.47394 * 128.56528 * 180.23787 * 6 5 4 8 8 O 1.21608 * 119.99962 * 180.17230 * 7 6 5 9 9 N 1.34775 * 119.99948 * 0.16553 * 7 6 5 10 10 C 1.46507 * 119.99916 * 180.02562 * 9 7 6 11 11 C 1.52991 * 109.47160 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47113 * 65.00038 * 11 10 9 13 13 N 1.46499 * 109.47358 * 304.99990 * 11 10 9 14 14 C 1.36942 * 120.00206 * 155.00136 * 13 11 10 15 15 H 1.07998 * 120.00009 * 359.97438 * 14 13 11 16 16 C 1.38814 * 119.99877 * 180.02562 * 14 13 11 17 17 N 1.31622 * 120.00086 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99815 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46712 * 89.99781 * 18 16 14 20 20 H 1.48502 * 109.46926 * 209.99697 * 18 16 14 21 21 H 1.48499 * 109.47174 * 329.99984 * 18 16 14 22 22 C 1.53005 * 109.47468 * 185.00046 * 11 10 9 23 23 C 1.52996 * 117.49807 * 248.75165 * 22 11 10 24 24 C 1.52990 * 117.50256 * 180.08715 * 22 11 10 25 25 H 1.09001 * 109.46953 * 90.02549 * 1 2 3 26 26 H 1.09000 * 109.47318 * 210.02147 * 1 2 3 27 27 H 1.09000 * 109.47161 * 330.02777 * 1 2 3 28 28 H 1.08001 * 126.82751 * 180.02562 * 5 4 3 29 29 H 0.96998 * 120.00598 * 0.02562 * 9 7 6 30 30 H 1.08998 * 109.47204 * 300.00369 * 10 9 7 31 31 H 1.09004 * 109.46967 * 59.99874 * 10 9 7 32 32 H 0.96999 * 120.00062 * 335.00051 * 13 11 10 33 33 H 0.96998 * 119.99824 * 180.02562 * 17 16 14 34 34 H 1.08997 * 115.54780 * 34.41510 * 22 11 10 35 35 H 1.09004 * 117.50102 * 359.97438 * 23 22 11 36 36 H 1.09002 * 117.50322 * 145.01577 * 23 22 11 37 37 H 1.09001 * 117.50551 * 214.97574 * 24 22 11 38 38 H 1.09006 * 117.49939 * 359.97438 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 0.0005 5 6 3.6494 -0.6007 0.0004 6 6 2.3992 -1.1696 0.0058 7 6 2.0401 -2.5991 0.0127 8 8 0.8706 -2.9323 0.0137 9 7 3.0080 -3.5370 0.0178 10 6 2.6511 -4.9579 0.0241 11 6 3.9258 -5.8039 0.0284 12 1 4.4684 -5.6387 0.9592 13 7 4.7712 -5.4190 -1.1045 14 6 6.1238 -5.6260 -1.0510 15 1 6.5675 -6.0726 -0.1735 16 6 6.9248 -5.2608 -2.1243 17 7 6.3842 -4.7161 -3.1936 18 14 8.7700 -5.5425 -2.0510 19 1 9.0871 -6.8886 -2.5924 20 1 9.4613 -4.5077 -2.8612 21 1 9.2284 -5.4554 -0.6412 22 6 3.5563 -7.2839 -0.0907 23 6 3.8010 -8.1735 1.1297 24 6 4.7007 -8.2991 -0.1023 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3634 -0.8898 0.5142 27 1 -0.3633 0.8902 0.5134 28 1 4.5967 -1.1195 0.0011 29 1 3.9409 -3.2713 0.0173 30 1 2.0635 -5.1810 0.9147 31 1 2.0649 -5.1893 -0.8652 32 1 4.3728 -5.0176 -1.8926 33 1 6.9439 -4.4612 -3.9437 34 1 2.6834 -7.5024 -0.7059 35 1 4.2256 -7.7046 2.0174 36 1 3.0894 -8.9776 1.3172 37 1 4.5807 -9.1858 -0.7248 38 1 5.7171 -7.9127 -0.0255 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490699289.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:50 Heat of formation + Delta-G solvation = 37.879074 kcal Electronic energy + Delta-G solvation = -21575.722162 eV Core-core repulsion = 18228.894558 eV Total energy + Delta-G solvation = -3346.827604 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.93816 -40.65572 -38.96478 -36.13375 -35.47790 -35.17645 -33.38561 -32.43088 -30.00038 -29.39575 -26.24399 -25.17045 -23.57848 -22.98830 -22.32371 -21.56259 -20.96063 -19.54249 -18.91912 -18.75549 -17.52306 -17.06377 -16.81007 -16.18072 -16.05299 -15.76162 -15.26543 -15.02336 -14.79041 -14.39257 -14.23960 -14.08297 -13.67906 -13.41592 -12.96732 -12.87661 -12.64575 -12.40087 -12.34926 -12.22377 -11.95543 -11.69921 -11.27827 -10.97523 -10.97291 -10.85741 -10.80116 -10.74038 -10.03985 -8.96797 -7.85694 -5.13039 0.06789 0.72174 1.52067 1.55017 1.60718 1.88490 2.16008 2.31229 2.60900 3.01583 3.11095 3.31919 3.51866 3.81372 3.85123 3.97761 4.03344 4.21148 4.39139 4.42899 4.43494 4.57174 4.62275 4.63124 4.71724 4.77852 4.89660 4.93716 5.14996 5.19441 5.19753 5.43553 5.46245 5.52682 5.66153 6.33890 6.51138 7.12367 7.17329 7.43026 8.13553 8.39038 9.36802 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.014959 B = 0.005186 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.314767 B = 5397.961358 C = 6902.650099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.059 3.941 3 N -0.380 5.380 4 O 0.093 5.907 5 C 0.029 3.971 6 C -0.280 4.280 7 C 0.594 3.406 8 O -0.570 6.570 9 N -0.700 5.700 10 C 0.129 3.871 11 C 0.197 3.803 12 H 0.062 0.938 13 N -0.723 5.723 14 C -0.216 4.216 15 H 0.078 0.922 16 C -0.066 4.066 17 N -0.966 5.966 18 Si 0.955 3.045 19 H -0.299 1.299 20 H -0.303 1.303 21 H -0.268 1.268 22 C -0.173 4.173 23 C -0.162 4.162 24 C -0.175 4.175 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.259 0.741 29 H 0.412 0.588 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.373 0.627 33 H 0.247 0.753 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.870 3.489 9.666 12.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.103 4.103 3 N -0.090 5.090 4 O 0.036 5.964 5 C -0.053 4.053 6 C -0.288 4.288 7 C 0.381 3.619 8 O -0.451 6.451 9 N -0.351 5.351 10 C 0.005 3.995 11 C 0.088 3.912 12 H 0.080 0.920 13 N -0.362 5.362 14 C -0.348 4.348 15 H 0.096 0.904 16 C -0.258 4.258 17 N -0.617 5.617 18 Si 0.787 3.213 19 H -0.227 1.227 20 H -0.230 1.230 21 H -0.193 1.193 22 C -0.195 4.195 23 C -0.200 4.200 24 C -0.212 4.212 25 H 0.108 0.892 26 H 0.106 0.894 27 H 0.112 0.888 28 H 0.275 0.725 29 H 0.249 0.751 30 H 0.102 0.898 31 H 0.072 0.928 32 H 0.205 0.795 33 H 0.056 0.944 34 H 0.111 0.889 35 H 0.116 0.884 36 H 0.123 0.877 37 H 0.102 0.898 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.662 4.527 9.752 13.203 hybrid contribution 1.434 -0.937 -0.952 1.959 sum -6.229 3.590 8.801 11.364 Atomic orbital electron populations 1.20304 0.83791 1.04642 1.04391 1.25245 0.99931 0.86354 0.98819 1.73655 0.89717 1.24024 1.21592 1.84543 1.21128 1.23685 1.67042 1.27098 1.01078 0.83163 0.94004 1.22325 0.93908 0.95075 1.17479 1.16970 0.85140 0.83706 0.76060 1.90730 1.19369 1.82595 1.52453 1.45733 1.09874 1.06233 1.73236 1.21536 0.97073 0.78891 1.02018 1.20165 0.89522 0.89963 0.91561 0.91999 1.42576 1.03495 1.73057 1.17104 1.19440 0.84077 1.31280 0.99960 0.90413 1.25291 1.00895 1.02936 0.96729 1.69794 1.35140 1.49754 1.07005 0.85406 0.82181 0.76271 0.77466 1.22652 1.23011 1.19258 1.22936 1.00112 0.94117 1.02286 1.23035 1.02778 1.02302 0.91876 1.22735 0.96374 1.00412 1.01716 0.89231 0.89401 0.88839 0.72484 0.75116 0.89752 0.92755 0.79472 0.94439 0.88868 0.88444 0.87715 0.89826 0.89968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.67 10.15 71.24 0.72 -0.95 16 2 C 0.06 1.63 7.58 45.16 0.34 1.97 16 3 N -0.38 -10.56 12.01 -44.79 -0.54 -11.09 16 4 O 0.09 2.31 11.06 76.98 0.85 3.16 16 5 C 0.03 0.64 11.85 67.61 0.80 1.44 16 6 C -0.28 -7.76 6.47 -18.75 -0.12 -7.88 16 7 C 0.59 18.61 7.81 86.65 0.68 19.29 16 8 O -0.57 -20.73 15.69 -4.06 -0.06 -20.79 16 9 N -0.70 -20.62 5.38 -466.40 -2.51 -23.13 16 10 C 0.13 3.88 5.22 86.37 0.45 4.33 16 11 C 0.20 6.44 2.70 44.99 0.12 6.56 16 12 H 0.06 1.99 7.84 -2.39 -0.02 1.97 16 13 N -0.72 -30.37 4.54 -322.94 -1.47 -31.83 16 14 C -0.22 -10.17 8.63 84.03 0.73 -9.45 16 15 H 0.08 3.54 6.91 -2.91 -0.02 3.52 16 16 C -0.07 -3.39 5.50 84.86 0.47 -2.92 16 17 N -0.97 -54.12 13.06 21.65 0.28 -53.84 16 18 Si 0.96 42.48 29.55 68.60 2.03 44.51 16 19 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 20 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 21 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 22 C -0.17 -5.34 5.36 -10.80 -0.06 -5.40 16 23 C -0.16 -4.11 10.18 30.62 0.31 -3.79 16 24 C -0.17 -5.60 9.78 30.62 0.30 -5.30 16 25 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.09 2.13 7.10 -2.39 -0.02 2.11 16 27 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.26 3.95 7.68 -2.91 -0.02 3.93 16 29 H 0.41 11.61 7.32 -92.71 -0.68 10.93 16 30 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 32 H 0.37 17.66 7.80 -92.71 -0.72 16.93 16 33 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 34 H 0.09 2.85 8.11 -2.39 -0.02 2.83 16 35 H 0.10 2.29 8.05 -2.38 -0.02 2.27 16 36 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.08 2.57 8.14 -2.39 -0.02 2.56 16 38 H 0.08 3.01 6.23 -2.38 -0.01 2.99 16 Total: -1.00 -61.72 328.05 3.02 -58.70 By element: Atomic # 1 Polarization: 36.71 SS G_CDS: -0.30 Total: 36.41 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 4.74 Total: -2.09 kcal Atomic # 7 Polarization: -115.66 SS G_CDS: -4.23 Total: -119.89 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: 0.79 Total: -17.63 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -61.72 3.02 -58.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490699289.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.581 kcal (2) G-P(sol) polarization free energy of solvation -61.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds