Wall clock time and date at job start Tue Mar 31 2020 02:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29940 * 125.37668 * 2 1 4 4 C 1.36067 * 108.47570 * 179.97438 * 3 2 1 5 5 C 1.47419 * 126.44751 * 179.97438 * 4 3 2 6 6 O 1.21613 * 119.99690 * 180.02562 * 5 4 3 7 7 N 1.34775 * 119.99872 * 0.29791 * 5 4 3 8 8 C 1.46502 * 119.99702 * 179.72558 * 7 5 4 9 9 C 1.53002 * 109.46969 * 180.02562 * 8 7 5 10 10 N 1.46502 * 109.46969 * 179.97438 * 9 8 7 11 11 C 1.36939 * 119.99768 * 269.99794 * 10 9 8 12 12 H 1.08002 * 119.99740 * 140.53816 * 11 10 9 13 13 C 1.38816 * 120.00187 * 320.53590 * 11 10 9 14 14 N 1.31619 * 119.99629 * 340.27965 * 13 11 10 15 15 Si 1.86800 * 119.99821 * 160.27781 * 13 11 10 16 16 H 1.48493 * 109.47124 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46870 * 120.00157 * 15 13 11 18 18 H 1.48498 * 109.47138 * 239.99782 * 15 13 11 19 19 C 1.46497 * 120.00176 * 89.99987 * 10 9 8 20 20 C 1.52997 * 117.49931 * 183.28679 * 19 10 9 21 21 C 1.52995 * 117.50178 * 114.66214 * 19 10 9 22 22 C 1.36097 * 107.10116 * 0.26081 * 4 3 2 23 23 O 1.34047 * 125.38101 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.46772 * 90.00071 * 1 2 3 25 25 H 1.08995 * 109.47309 * 210.00262 * 1 2 3 26 26 H 1.09001 * 109.46849 * 330.00303 * 1 2 3 27 27 H 0.96996 * 120.00431 * 359.73353 * 7 5 4 28 28 H 1.09000 * 109.47205 * 299.99851 * 8 7 5 29 29 H 1.08995 * 109.47424 * 60.00093 * 8 7 5 30 30 H 1.08996 * 109.47145 * 299.99540 * 9 8 7 31 31 H 1.09004 * 109.47301 * 60.00214 * 9 8 7 32 32 H 0.96999 * 119.99466 * 175.01732 * 14 13 11 33 33 H 1.08999 * 115.54910 * 328.99810 * 19 10 9 34 34 H 1.08996 * 117.49638 * 359.97438 * 20 19 10 35 35 H 1.09004 * 117.49477 * 145.02427 * 20 19 10 36 36 H 1.09002 * 117.50493 * 214.98117 * 21 19 10 37 37 H 1.09007 * 117.49756 * 359.97438 * 21 19 10 38 38 H 1.08002 * 126.52013 * 179.73283 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0595 0.0000 4 6 3.5612 0.6639 0.0006 5 6 4.7439 1.5439 0.0003 6 8 5.8605 1.0619 0.0004 7 7 4.5878 2.8826 0.0054 8 6 5.7632 3.7571 0.0111 9 6 5.3113 5.2188 0.0168 10 7 6.4867 6.0933 0.0232 11 6 7.0335 6.4966 1.2121 12 1 8.1065 6.5536 1.3212 13 6 6.2088 6.8322 2.2771 14 7 4.9478 7.1413 2.0608 15 14 6.8886 6.8451 4.0169 16 1 8.3235 6.4638 3.9904 17 1 6.7493 8.2068 4.5927 18 1 6.1336 5.8755 4.8506 19 6 7.0770 6.5363 -1.2423 20 6 8.3481 7.3848 -1.1702 21 6 7.0183 8.0308 -1.5643 22 6 3.5660 -0.6970 -0.0050 23 8 2.2832 -1.0929 0.0005 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 3.6973 3.2671 0.0054 28 1 6.3597 3.5581 0.9014 29 1 6.3631 3.5654 -0.8785 30 1 4.7146 5.4181 -0.8733 31 1 4.7116 5.4103 0.9067 32 1 4.3534 7.3052 2.8097 33 1 6.9839 5.8382 -2.0743 34 1 8.7448 7.6137 -0.1811 35 1 9.0917 7.2449 -1.9548 36 1 6.8872 8.3161 -2.6082 37 1 6.5401 8.6845 -0.8348 38 1 4.4362 -1.3367 -0.0102 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493364310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:14 Heat of formation + Delta-G solvation = 31.964743 kcal Electronic energy + Delta-G solvation = -21221.437078 eV Core-core repulsion = 17874.353009 eV Total energy + Delta-G solvation = -3347.084068 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.52162 -39.13351 -37.07469 -35.01262 -34.72969 -33.15638 -32.37469 -30.80278 -28.22599 -27.57219 -24.77769 -23.63798 -21.90761 -21.43965 -21.15008 -20.29365 -19.73122 -18.10299 -17.03958 -16.56790 -16.06288 -15.61498 -15.34975 -14.81951 -14.60177 -14.34713 -14.02527 -13.87111 -13.42459 -13.28841 -12.80468 -12.79513 -12.60449 -11.91739 -11.58017 -11.32055 -11.04963 -10.91682 -10.74921 -10.70536 -10.31799 -10.16197 -9.96016 -9.79488 -9.61368 -9.27521 -9.12386 -8.56632 -8.47651 -6.59034 -5.83556 -3.50656 1.05537 1.96094 2.44275 3.31771 3.38383 3.42269 3.45553 3.49775 3.82132 4.42588 4.67389 4.84357 4.95807 5.04720 5.08377 5.27193 5.29374 5.34065 5.48923 5.58991 5.92345 5.95750 6.06394 6.10326 6.22270 6.29599 6.51083 6.51909 6.63350 6.82088 6.98071 7.07688 7.24792 7.35059 7.51073 7.77340 7.91947 8.44546 8.48644 9.09670 9.70401 10.28408 11.11784 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018307 B = 0.004078 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.092370 B = 6864.682893 C = 7435.750386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.191 3.809 3 N -0.459 5.459 4 C -0.062 4.062 5 C 0.592 3.408 6 O -0.545 6.545 7 N -0.699 5.699 8 C 0.097 3.903 9 C 0.141 3.859 10 N -0.547 5.547 11 C -0.262 4.262 12 H 0.066 0.934 13 C 0.016 3.984 14 N -0.882 5.882 15 Si 0.896 3.104 16 H -0.274 1.274 17 H -0.288 1.288 18 H -0.287 1.287 19 C 0.119 3.881 20 C -0.194 4.194 21 C -0.219 4.219 22 C 0.003 3.997 23 O -0.200 6.200 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.103 0.897 27 H 0.407 0.593 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.034 0.966 31 H 0.100 0.900 32 H 0.255 0.745 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.494 -13.070 -5.256 16.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.018 4.018 3 N -0.190 5.190 4 C -0.183 4.183 5 C 0.377 3.623 6 O -0.423 6.423 7 N -0.348 5.348 8 C -0.028 4.028 9 C 0.014 3.986 10 N -0.264 5.264 11 C -0.392 4.392 12 H 0.084 0.916 13 C -0.185 4.185 14 N -0.523 5.523 15 Si 0.725 3.275 16 H -0.199 1.199 17 H -0.215 1.215 18 H -0.213 1.213 19 C 0.010 3.990 20 C -0.232 4.232 21 C -0.260 4.260 22 C -0.070 4.070 23 O -0.087 6.087 24 H 0.112 0.888 25 H 0.107 0.893 26 H 0.122 0.878 27 H 0.242 0.758 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.117 0.883 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.111 0.889 38 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -8.044 -12.647 -5.119 15.839 hybrid contribution 0.226 -0.411 0.936 1.047 sum -7.818 -13.058 -4.183 15.784 Atomic orbital electron populations 1.20300 0.80932 1.05357 1.04856 1.26349 0.96671 0.78377 1.00404 1.70803 1.00874 1.29894 1.17408 1.22001 0.92219 0.93169 1.10881 1.16787 0.85924 0.82327 0.77307 1.90806 1.24261 1.75509 1.51773 1.45928 1.11795 1.05060 1.72011 1.22433 0.86617 0.92134 1.01596 1.21004 0.90279 0.84834 1.02438 1.43176 1.32223 1.50912 1.00068 1.19095 0.91349 1.40144 0.88570 0.91608 1.25251 0.96420 0.97339 0.99460 1.70062 1.05240 1.46672 1.30363 0.86347 0.79039 0.77334 0.84830 1.19857 1.21515 1.21326 1.21246 0.97665 0.89799 0.90295 1.23021 0.91021 1.07081 1.02104 1.23337 1.01647 1.01396 0.99612 1.25256 0.84656 0.95786 1.01321 1.84363 1.16804 1.37955 1.69546 0.88767 0.89267 0.87798 0.75841 0.91274 0.92784 0.94793 0.88274 0.93520 0.89541 0.88417 0.90755 0.91249 0.88937 0.75358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.34 10.51 36.01 0.38 0.04 16 2 C 0.19 2.10 8.30 -13.08 -0.11 1.99 16 3 N -0.46 -6.50 11.06 -7.65 -0.08 -6.58 16 4 C -0.06 -0.95 6.99 -83.02 -0.58 -1.53 16 5 C 0.59 10.73 7.81 -12.52 -0.10 10.64 16 6 O -0.54 -11.21 16.89 5.27 0.09 -11.12 16 7 N -0.70 -12.73 5.55 -61.38 -0.34 -13.07 16 8 C 0.10 2.00 6.00 -4.04 -0.02 1.97 16 9 C 0.14 3.18 5.45 -4.04 -0.02 3.16 16 10 N -0.55 -13.30 2.75 -165.66 -0.46 -13.75 16 11 C -0.26 -6.96 8.47 -15.06 -0.13 -7.08 16 12 H 0.07 1.77 6.75 -52.49 -0.35 1.41 16 13 C 0.02 0.44 4.98 -17.43 -0.09 0.35 16 14 N -0.88 -24.56 11.50 55.49 0.64 -23.93 16 15 Si 0.90 21.34 29.60 -169.99 -5.03 16.31 16 16 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 C 0.12 2.54 6.56 -67.94 -0.45 2.10 16 20 C -0.19 -3.86 9.80 -26.73 -0.26 -4.12 16 21 C -0.22 -4.49 10.36 -26.73 -0.28 -4.76 16 22 C 0.00 0.04 11.95 29.96 0.36 0.40 16 23 O -0.20 -2.23 10.73 6.54 0.07 -2.16 16 24 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.41 6.90 8.20 -40.82 -0.33 6.57 16 28 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 29 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.03 0.72 8.07 -51.93 -0.42 0.30 16 31 H 0.10 2.50 5.59 -51.93 -0.29 2.21 16 32 H 0.25 6.86 8.32 -40.82 -0.34 6.52 16 33 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 34 H 0.10 2.12 6.46 -51.93 -0.34 1.78 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.09 2.16 8.14 -51.93 -0.42 1.74 16 38 H 0.23 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 331.30 15.07 4.99 4.99 Total: -1.00 -31.66 331.30 -6.52 -38.18 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -5.10 Total: 7.98 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -1.30 Total: 3.15 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: -0.24 Total: -57.33 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.16 Total: -13.28 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.66 -6.52 -38.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493364310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.142 kcal (2) G-P(sol) polarization free energy of solvation -31.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds