Wall clock time and date at job start Tue Mar 31 2020 00:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39460 * 125.73212 * 2 1 4 4 C 1.36676 * 107.84475 * 179.97438 * 3 2 1 5 5 N 1.38587 * 126.31757 * 180.02562 * 4 3 2 6 6 C 1.34771 * 120.00010 * 359.97438 * 5 4 3 7 7 O 1.21814 * 120.00133 * 359.97438 * 6 5 4 8 8 C 1.41537 * 119.99978 * 179.97438 * 6 5 4 9 9 H 1.08001 * 119.99730 * 359.97438 * 8 6 5 10 10 C 1.40163 * 119.99898 * 180.02562 * 8 6 5 11 11 N 1.30614 * 119.99978 * 359.97438 * 10 8 6 12 12 Si 1.86799 * 119.99964 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.47097 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47309 * 119.99474 * 12 10 8 15 15 H 1.48493 * 109.47173 * 239.99797 * 12 10 8 16 16 N 1.36058 * 107.36449 * 359.97438 * 4 3 2 17 17 C 1.46500 * 126.11612 * 180.26459 * 16 4 3 18 18 C 1.53177 * 109.54211 * 239.26810 * 17 16 4 19 19 C 1.53098 * 109.16462 * 183.15443 * 18 17 16 20 20 O 1.42897 * 109.41717 * 57.60871 * 19 18 17 21 21 C 1.42908 * 114.09777 * 298.84489 * 20 19 18 22 22 C 1.53096 * 109.41431 * 61.15356 * 21 20 19 23 23 N 1.30993 * 125.72758 * 179.97438 * 2 1 3 24 24 H 1.09008 * 109.47261 * 270.00483 * 1 2 3 25 25 H 1.09003 * 109.46935 * 29.99805 * 1 2 3 26 26 H 1.08994 * 109.47328 * 150.00446 * 1 2 3 27 27 H 1.08005 * 126.07709 * 359.97286 * 3 2 1 28 28 H 0.97006 * 119.99794 * 179.97438 * 5 4 3 29 29 H 0.97003 * 120.00016 * 180.02562 * 11 10 8 30 30 H 1.08998 * 109.54719 * 359.53366 * 17 16 4 31 31 H 1.09003 * 109.52903 * 303.05847 * 18 17 16 32 32 H 1.08999 * 109.52539 * 63.25050 * 18 17 16 33 33 H 1.08996 * 109.47807 * 297.62524 * 19 18 17 34 34 H 1.08997 * 109.48105 * 177.59575 * 19 18 17 35 35 H 1.09002 * 109.48203 * 301.17837 * 21 20 19 36 36 H 1.08992 * 109.48302 * 181.13759 * 21 20 19 37 37 H 1.08994 * 109.52581 * 182.48504 * 22 21 20 38 38 H 1.09001 * 109.57431 * 62.33238 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3214 1.1321 0.0000 4 6 3.6221 0.7123 0.0006 5 7 4.7462 1.5229 0.0013 6 6 4.6101 2.8637 0.0009 7 8 3.4991 3.3631 -0.0005 8 6 5.7581 3.6915 0.0022 9 1 6.7432 3.2487 0.0038 10 6 5.6166 5.0860 0.0023 11 7 4.4253 5.6215 0.0008 12 14 7.1317 6.1786 0.0033 13 1 8.3522 5.3324 0.0044 14 1 7.1245 7.0360 -1.2091 15 1 7.1232 7.0357 1.2158 16 7 3.6097 -0.6482 0.0015 17 6 4.7852 -1.5225 0.0078 18 6 4.7621 -2.4211 -1.2324 19 6 5.9507 -3.3845 -1.1773 20 8 5.8865 -4.1496 0.0279 21 6 5.9518 -3.3657 1.2209 22 6 4.7633 -2.4015 1.2621 23 7 2.2719 -1.0634 0.0005 24 1 -0.3634 0.0001 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5137 27 1 1.9842 2.1582 -0.0004 28 1 5.6309 1.1251 0.0020 29 1 4.3273 6.5866 0.0005 30 1 5.6908 -0.9160 0.0034 31 1 3.8327 -2.9902 -1.2528 32 1 4.8333 -1.8059 -2.1294 33 1 6.8805 -2.8161 -1.1979 34 1 5.9153 -4.0550 -2.0359 35 1 6.8817 -2.7970 1.2317 36 1 5.9172 -4.0226 2.0899 37 1 4.8352 -1.7723 2.1491 38 1 3.8334 -2.9693 1.2928 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001545919122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:28 Heat of formation + Delta-G solvation = -11.747796 kcal Electronic energy + Delta-G solvation = -22048.233727 eV Core-core repulsion = 18699.254141 eV Total energy + Delta-G solvation = -3348.979586 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.72734 -39.16392 -37.59069 -34.72163 -33.58318 -32.51174 -31.28649 -31.05376 -28.46311 -27.65399 -26.37696 -24.12336 -23.70586 -21.55165 -20.77805 -19.30419 -18.97604 -17.48253 -16.73018 -16.18588 -15.91924 -15.59476 -14.94264 -14.86448 -14.34028 -14.10420 -13.89403 -13.72658 -12.98406 -12.80755 -12.60370 -12.43717 -12.30958 -12.08120 -11.76509 -11.56470 -11.45085 -11.38884 -11.23708 -10.87548 -10.76640 -10.53208 -10.40898 -9.83200 -9.70684 -9.67292 -9.00933 -8.06673 -7.77687 -6.97478 -6.47530 -5.01625 2.61023 2.83822 2.98850 3.07468 3.11552 3.66208 3.70089 3.89816 4.35855 4.37080 4.50420 4.62869 4.80877 4.85561 5.05603 5.13237 5.28683 5.41821 5.49915 5.51187 5.62677 5.69628 5.70180 5.83517 6.03580 6.05436 6.08204 6.24806 6.43024 6.58400 6.99616 7.05274 7.09812 7.18919 7.65699 7.71190 7.94774 8.14530 8.51235 8.69955 9.16047 10.27640 10.46827 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016823 B = 0.005183 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.031609 B = 5401.292257 C = 6731.717818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.078 3.922 3 C -0.301 4.301 4 C 0.344 3.656 5 N -0.672 5.672 6 C 0.548 3.452 7 O -0.550 6.550 8 C -0.535 4.535 9 H 0.071 0.929 10 C 0.088 3.912 11 N -0.744 5.744 12 Si 0.915 3.085 13 H -0.262 1.262 14 H -0.273 1.273 15 H -0.273 1.273 16 N -0.404 5.404 17 C 0.173 3.827 18 C -0.162 4.162 19 C 0.065 3.935 20 O -0.382 6.382 21 C 0.065 3.935 22 C -0.162 4.162 23 N -0.323 5.323 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.173 0.827 28 H 0.387 0.613 29 H 0.274 0.726 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.098 0.902 35 H 0.053 0.947 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.140 -12.673 0.031 13.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.087 4.087 3 C -0.333 4.333 4 C 0.123 3.877 5 N -0.319 5.319 6 C 0.357 3.643 7 O -0.431 6.431 8 C -0.571 4.571 9 H 0.089 0.911 10 C -0.135 4.135 11 N -0.371 5.371 12 Si 0.739 3.261 13 H -0.186 1.186 14 H -0.198 1.198 15 H -0.198 1.198 16 N -0.194 5.194 17 C 0.070 3.930 18 C -0.200 4.200 19 C -0.013 4.013 20 O -0.301 6.301 21 C -0.013 4.013 22 C -0.201 4.201 23 N -0.147 5.147 24 H 0.088 0.912 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.190 0.810 28 H 0.220 0.780 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.117 0.883 35 H 0.071 0.929 36 H 0.117 0.883 37 H 0.096 0.904 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.393 -13.550 0.029 13.760 hybrid contribution 1.383 1.564 0.011 2.088 sum 3.776 -11.986 0.039 12.567 Atomic orbital electron populations 1.20063 0.87649 1.02433 1.02183 1.22089 0.96335 0.91405 0.98871 1.21643 0.89017 1.00738 1.21936 1.18667 0.90785 0.81175 0.97058 1.43846 1.04415 1.07550 1.76138 1.17005 0.91308 0.77595 0.78432 1.90595 1.26985 1.71245 1.54263 1.19928 0.92776 0.91119 1.53235 0.91080 1.25748 0.96927 0.98462 0.92390 1.69997 1.23107 1.12234 1.31735 0.86188 0.81529 0.79842 0.78558 1.18571 1.19813 1.19820 1.48663 1.04998 1.02120 1.63591 1.20956 0.85367 0.90820 0.95887 1.22552 1.01081 0.98498 0.97890 1.22587 0.96511 0.94373 0.87795 1.87933 1.94524 1.33853 1.13751 1.22587 0.96503 0.94062 0.88101 1.22559 1.01081 0.98636 0.97795 1.77140 0.85144 1.21677 1.30725 0.91231 0.90744 0.91813 0.81011 0.78043 0.91466 0.89307 0.89431 0.90410 0.92874 0.88346 0.92866 0.88346 0.90422 0.89445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.98 10.44 36.00 0.38 -0.61 16 2 C 0.08 1.57 7.19 -82.50 -0.59 0.97 16 3 C -0.30 -7.02 9.57 -39.69 -0.38 -7.40 16 4 C 0.34 7.66 7.68 -153.10 -1.18 6.48 16 5 N -0.67 -15.13 5.37 -13.99 -0.08 -15.20 16 6 C 0.55 14.90 7.52 -15.00 -0.11 14.78 16 7 O -0.55 -16.79 11.98 5.09 0.06 -16.73 16 8 C -0.54 -14.07 9.30 -37.60 -0.35 -14.42 16 9 H 0.07 1.68 7.85 -52.49 -0.41 1.27 16 10 C 0.09 2.29 5.50 -17.35 -0.10 2.20 16 11 N -0.74 -20.80 11.72 55.56 0.65 -20.15 16 12 Si 0.91 18.67 29.56 -169.99 -5.02 13.65 16 13 H -0.26 -5.15 7.11 56.52 0.40 -4.74 16 14 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 15 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 16 N -0.40 -7.65 3.32 -53.62 -0.18 -7.83 16 17 C 0.17 2.52 3.06 -67.75 -0.21 2.31 16 18 C -0.16 -2.09 5.68 -26.59 -0.15 -2.24 16 19 C 0.06 0.68 6.84 37.21 0.25 0.93 16 20 O -0.38 -4.57 10.77 -35.23 -0.38 -4.95 16 21 C 0.06 0.68 6.84 37.21 0.25 0.93 16 22 C -0.16 -2.10 5.69 -26.59 -0.15 -2.25 16 23 N -0.32 -6.37 12.42 33.61 0.42 -5.95 16 24 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 25 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.17 4.51 5.82 -52.48 -0.31 4.21 16 28 H 0.39 7.33 7.51 -40.82 -0.31 7.02 16 29 H 0.27 6.89 8.29 -40.82 -0.34 6.55 16 30 H 0.09 1.20 6.85 -51.93 -0.36 0.84 16 31 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 317.67 15.07 4.79 4.79 Total: -1.00 -32.95 317.67 -7.24 -40.18 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -5.16 Total: 10.50 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -2.33 Total: 1.70 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: 0.82 Total: -49.14 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.32 Total: -21.68 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.02 Total: 13.65 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.95 -7.24 -40.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001545919122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.435 kcal (2) G-P(sol) polarization free energy of solvation -32.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds