Wall clock time and date at job start Tue Mar 31 2020 02:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34260 * 126.52536 * 2 1 4 4 C 1.34050 * 108.22813 * 180.26538 * 3 2 1 5 5 N 1.29939 * 109.24111 * 359.73550 * 4 3 2 6 6 C 1.36062 * 108.47588 * 359.97438 * 5 4 3 7 7 C 1.47425 * 126.44717 * 180.02562 * 6 5 4 8 8 O 1.21613 * 120.00045 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99932 * 359.74997 * 7 6 5 10 10 C 1.47021 * 125.64884 * 359.96257 * 9 7 6 11 11 C 1.54333 * 107.26888 * 178.85291 * 10 9 7 12 12 C 1.55157 * 103.01763 * 338.14374 * 11 10 9 13 13 H 1.09006 * 111.03602 * 277.21588 * 12 11 10 14 14 C 1.53003 * 111.00258 * 153.37996 * 12 11 10 15 15 N 1.46507 * 109.46683 * 181.35135 * 14 12 11 16 16 C 1.36937 * 119.99629 * 180.02562 * 15 14 12 17 17 H 1.07999 * 120.00326 * 0.02562 * 16 15 14 18 18 C 1.38816 * 120.00264 * 179.97438 * 16 15 14 19 19 N 1.31624 * 119.99183 * 359.97438 * 18 16 15 20 20 Si 1.86789 * 120.00200 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47429 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46991 * 120.00380 * 20 18 16 23 23 H 1.48503 * 109.47245 * 239.99767 * 20 18 16 24 24 C 1.47419 * 125.64891 * 180.27788 * 9 7 6 25 25 H 1.09000 * 109.47205 * 270.18432 * 1 2 3 26 26 H 1.09006 * 109.46695 * 30.18420 * 1 2 3 27 27 H 1.08995 * 109.46769 * 150.18062 * 1 2 3 28 28 H 1.07995 * 125.38238 * 179.69685 * 4 3 2 29 29 H 1.09003 * 109.88257 * 298.40212 * 10 9 7 30 30 H 1.09000 * 109.88161 * 59.56145 * 10 9 7 31 31 H 1.08995 * 110.85292 * 219.67757 * 11 10 9 32 32 H 1.08997 * 110.66610 * 96.52009 * 11 10 9 33 33 H 1.08998 * 109.47311 * 301.34730 * 14 12 11 34 34 H 1.08998 * 109.46746 * 61.35331 * 14 12 11 35 35 H 0.96999 * 120.00202 * 359.97438 * 15 14 12 36 36 H 0.97006 * 119.99548 * 180.02562 * 19 18 16 37 37 H 1.09000 * 110.36637 * 322.92547 * 24 9 7 38 38 H 1.09005 * 110.36891 * 85.14192 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5788 0.6581 -0.0059 5 7 3.6002 -0.6411 -0.0039 6 6 2.3170 -1.0935 0.0041 7 6 1.8853 -2.5032 0.0093 8 8 0.7003 -2.7762 0.0159 9 7 2.8040 -3.4893 0.0012 10 6 4.2622 -3.3019 -0.0138 11 6 4.9047 -4.7048 0.0110 12 6 3.7788 -5.5945 0.6011 13 1 3.7676 -5.5405 1.6898 14 6 3.9197 -7.0428 0.1283 15 7 2.8238 -7.8447 0.6781 16 6 2.7413 -9.1807 0.3894 17 1 3.4844 -9.6434 -0.2432 18 6 1.7032 -9.9408 0.9107 19 7 0.7985 -9.3772 1.6829 20 14 1.5912 -11.7634 0.5175 21 1 2.7222 -12.1502 -0.3635 22 1 1.6556 -12.5465 1.7776 23 1 0.3068 -12.0426 -0.1737 24 6 2.5132 -4.9345 -0.0007 25 1 -0.3633 0.0033 1.0277 26 1 -0.3633 0.8884 -0.5167 27 1 -0.3633 -0.8916 -0.5110 28 1 4.4489 1.2977 -0.0120 29 1 4.5585 -2.7721 -0.9191 30 1 4.5725 -2.7385 0.8662 31 1 5.7839 -4.7176 0.6550 32 1 5.1625 -5.0277 -0.9977 33 1 3.8825 -7.0748 -0.9606 34 1 4.8725 -7.4459 0.4714 35 1 2.1570 -7.4294 1.2472 36 1 0.0733 -9.9083 2.0476 37 1 1.6428 -5.1471 0.6201 38 1 2.3473 -5.2868 -1.0188 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567114704.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:20 Heat of formation + Delta-G solvation = -22.767641 kcal Electronic energy + Delta-G solvation = -21456.576254 eV Core-core repulsion = 18107.118812 eV Total energy + Delta-G solvation = -3349.457443 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.44543 -41.04318 -38.89418 -36.48820 -35.85488 -33.89616 -33.39971 -32.04516 -30.06254 -28.68162 -27.10511 -25.52963 -24.29478 -23.24422 -22.81800 -21.36213 -20.74524 -19.26256 -18.61259 -17.96139 -17.46902 -17.33375 -16.59234 -16.37817 -15.78011 -15.65107 -15.28417 -15.10990 -14.65814 -14.57002 -14.10204 -13.94934 -13.84510 -13.57738 -13.35393 -13.12578 -12.94943 -12.76133 -12.43749 -12.25157 -12.13430 -11.90919 -11.77174 -11.61483 -11.51320 -11.23336 -10.95016 -10.08742 -9.64961 -8.99981 -7.94282 -5.23818 0.01164 1.06458 1.47666 1.48992 1.53306 1.59151 1.90611 2.15506 2.56526 3.02851 3.38793 3.45532 3.61869 3.65731 3.76473 3.87627 4.18653 4.23301 4.33305 4.37980 4.45407 4.54554 4.58780 4.68958 4.82952 4.85030 4.91250 4.97462 5.06682 5.10226 5.15029 5.20758 5.29948 5.41935 5.50929 6.27363 6.33083 6.49717 6.94654 7.33394 8.09120 8.31317 9.29666 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.032676 B = 0.003462 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.690978 B = 8085.659759 C = 8811.911251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.047 3.953 3 O -0.197 6.197 4 C 0.197 3.803 5 N -0.486 5.486 6 C -0.102 4.102 7 C 0.600 3.400 8 O -0.573 6.573 9 N -0.605 5.605 10 C 0.121 3.879 11 C -0.114 4.114 12 C -0.096 4.096 13 H 0.077 0.923 14 C 0.165 3.835 15 N -0.749 5.749 16 C -0.243 4.243 17 H 0.080 0.920 18 C -0.079 4.079 19 N -0.972 5.972 20 Si 0.976 3.024 21 H -0.263 1.263 22 H -0.293 1.293 23 H -0.295 1.295 24 C 0.122 3.878 25 H 0.100 0.900 26 H 0.109 0.891 27 H 0.090 0.910 28 H 0.308 0.692 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.027 0.973 34 H 0.036 0.964 35 H 0.372 0.628 36 H 0.250 0.750 37 H 0.048 0.952 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.126 24.796 -4.474 26.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.011 4.011 3 O -0.084 6.084 4 C -0.032 4.032 5 N -0.214 5.214 6 C -0.220 4.220 7 C 0.389 3.611 8 O -0.454 6.454 9 N -0.337 5.337 10 C 0.000 4.000 11 C -0.152 4.152 12 C -0.115 4.115 13 H 0.095 0.905 14 C 0.038 3.962 15 N -0.391 5.391 16 C -0.375 4.375 17 H 0.098 0.902 18 C -0.271 4.271 19 N -0.623 5.623 20 Si 0.805 3.195 21 H -0.187 1.187 22 H -0.220 1.220 23 H -0.223 1.223 24 C -0.001 4.001 25 H 0.118 0.882 26 H 0.128 0.872 27 H 0.109 0.891 28 H 0.322 0.678 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.127 0.873 32 H 0.108 0.892 33 H 0.045 0.955 34 H 0.054 0.946 35 H 0.203 0.797 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.101 24.178 -4.574 26.236 hybrid contribution -1.232 -0.728 0.247 1.452 sum 7.869 23.450 -4.327 25.111 Atomic orbital electron populations 1.20637 0.81605 1.05697 1.05370 1.23977 0.95977 0.83197 0.97899 1.84416 1.19144 1.35375 1.69455 1.29275 0.85750 0.90873 0.97290 1.70798 1.20674 1.11621 1.18339 1.21129 0.90466 0.94191 1.16188 1.16845 0.84350 0.83416 0.76464 1.90776 1.17327 1.83850 1.53438 1.48404 1.08517 1.05798 1.70943 1.22146 0.77044 0.97587 1.03270 1.22728 0.97431 0.91882 1.03148 1.22403 0.94463 0.94408 1.00234 0.90499 1.20760 0.90926 0.88463 0.96029 1.42642 1.30114 1.06638 1.59746 1.19713 1.07553 0.86414 1.23834 0.90196 1.25626 0.97860 1.02733 1.00905 1.69852 1.16556 1.36587 1.39285 0.85036 0.77415 0.79968 0.77117 1.18681 1.22043 1.22274 1.22121 0.98635 0.78820 1.00508 0.88157 0.87237 0.89117 0.67756 0.89996 0.90292 0.87286 0.89249 0.95515 0.94569 0.79663 0.94104 0.93332 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.39 9.87 71.24 0.70 -0.68 16 2 C 0.05 1.02 7.44 25.18 0.19 1.21 16 3 O -0.20 -3.18 10.73 0.35 0.00 -3.18 16 4 C 0.20 2.41 13.19 130.52 1.72 4.14 16 5 N -0.49 -10.20 8.84 -305.15 -2.70 -12.90 16 6 C -0.10 -2.73 6.83 40.41 0.28 -2.46 16 7 C 0.60 20.59 7.85 86.66 0.68 21.27 16 8 O -0.57 -23.11 15.06 -4.07 -0.06 -23.17 16 9 N -0.61 -19.61 3.33 -815.64 -2.71 -22.33 16 10 C 0.12 2.94 5.53 86.73 0.48 3.42 16 11 C -0.11 -2.59 6.42 31.79 0.20 -2.39 16 12 C -0.10 -3.10 3.11 -9.40 -0.03 -3.13 16 13 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 14 C 0.16 6.47 5.71 86.38 0.49 6.96 16 15 N -0.75 -38.95 5.45 -343.43 -1.87 -40.82 16 16 C -0.24 -13.83 9.99 84.03 0.84 -12.99 16 17 H 0.08 4.31 7.83 -2.91 -0.02 4.28 16 18 C -0.08 -4.67 5.50 84.86 0.47 -4.21 16 19 N -0.97 -61.58 13.06 21.65 0.28 -61.30 16 20 Si 0.98 47.11 29.55 68.60 2.03 49.14 16 21 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 22 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 23 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 24 C 0.12 4.47 6.08 86.86 0.53 5.00 16 25 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 27 H 0.09 2.11 6.49 -2.39 -0.02 2.10 16 28 H 0.31 -0.24 8.06 -2.91 -0.02 -0.26 16 29 H 0.08 1.83 7.76 -2.39 -0.02 1.81 16 30 H 0.08 1.83 7.63 -2.39 -0.02 1.81 16 31 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.09 1.86 8.04 -2.39 -0.02 1.84 16 33 H 0.03 1.04 8.10 -2.39 -0.02 1.02 16 34 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.37 20.96 7.53 -92.71 -0.70 20.26 16 36 H 0.25 15.34 8.31 -92.70 -0.77 14.57 16 37 H 0.05 2.11 8.04 -2.39 -0.02 2.09 16 38 H 0.06 2.38 8.01 -2.38 -0.02 2.36 16 Total: -1.00 -77.76 321.34 1.90 -75.86 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: 0.38 Total: 22.57 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 6.55 Total: 16.13 kcal Atomic # 7 Polarization: -130.35 SS G_CDS: -7.00 Total: -137.34 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.06 Total: -26.35 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -77.76 1.90 -75.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567114704.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.088 kcal (2) G-P(sol) polarization free energy of solvation -77.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds