Wall clock time and date at job start Tue Mar 31 2020 02:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29934 * 125.37758 * 2 1 4 4 C 1.36062 * 108.47780 * 180.02562 * 3 2 1 5 5 C 1.47425 * 126.45012 * 179.97438 * 4 3 2 6 6 O 1.21606 * 120.00335 * 180.02562 * 5 4 3 7 7 N 1.34781 * 119.99769 * 0.02562 * 5 4 3 8 8 C 1.47422 * 125.64611 * 354.95504 * 7 5 4 9 9 C 1.55137 * 104.71712 * 155.81685 * 8 7 5 10 10 C 1.55156 * 101.48778 * 37.29507 * 9 8 7 11 11 C 1.47023 * 125.64722 * 175.25937 * 7 5 4 12 12 H 1.08994 * 109.88148 * 300.44875 * 11 7 5 13 13 C 1.53004 * 109.88060 * 61.60706 * 11 7 5 14 14 N 1.46490 * 109.47155 * 185.38397 * 13 11 7 15 15 C 1.36937 * 120.00095 * 185.01362 * 14 13 11 16 16 H 1.08001 * 120.00400 * 0.02562 * 15 14 13 17 17 C 1.38820 * 120.00023 * 180.02562 * 15 14 13 18 18 N 1.31620 * 119.99871 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99753 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.47410 * 60.00456 * 19 17 15 21 21 H 1.48496 * 109.47175 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47705 * 300.00170 * 19 17 15 23 23 C 1.36095 * 107.10209 * 0.23431 * 4 3 2 24 24 O 1.34049 * 125.38115 * 180.02562 * 2 1 3 25 25 H 1.08997 * 109.47565 * 90.00134 * 1 2 3 26 26 H 1.09004 * 109.47134 * 210.00450 * 1 2 3 27 27 H 1.09000 * 109.47390 * 330.00122 * 1 2 3 28 28 H 1.08994 * 110.36977 * 274.73865 * 8 7 5 29 29 H 1.09000 * 110.37262 * 37.06934 * 8 7 5 30 30 H 1.08999 * 111.19216 * 279.18648 * 9 8 7 31 31 H 1.08999 * 110.90464 * 155.27487 * 9 8 7 32 32 H 1.08999 * 110.71982 * 205.97031 * 10 9 8 33 33 H 1.08998 * 110.71844 * 82.69650 * 10 9 8 34 34 H 1.08999 * 109.47074 * 305.39083 * 13 11 7 35 35 H 1.09010 * 109.46659 * 65.38436 * 13 11 7 36 36 H 0.97005 * 120.00239 * 5.01820 * 14 13 11 37 37 H 0.97001 * 119.99352 * 180.02562 * 18 17 15 38 38 H 1.07999 * 126.52314 * 179.73768 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2592 1.0594 0.0000 4 6 3.5611 0.6639 -0.0006 5 6 4.7439 1.5439 -0.0013 6 8 5.8604 1.0620 -0.0023 7 7 4.5877 2.8826 -0.0009 8 6 3.3028 3.5978 -0.1052 9 6 3.5665 4.9795 0.5492 10 6 5.0180 5.2697 0.0840 11 6 5.6712 3.8716 0.0972 12 1 6.2210 3.7280 1.0272 13 6 6.6167 3.7278 -1.0971 14 7 7.7602 4.6272 -0.9258 15 6 8.6915 4.7483 -1.9224 16 1 8.5828 4.1810 -2.8349 17 6 9.7754 5.6002 -1.7598 18 7 9.9082 6.2912 -0.6475 19 14 11.0453 5.7658 -3.1196 20 1 10.3855 6.2569 -4.3561 21 1 12.0942 6.7306 -2.7024 22 1 11.6655 4.4423 -3.3817 23 6 3.5659 -0.6970 -0.0063 24 8 2.2831 -1.0929 -0.0005 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 3.0196 3.7186 -1.1507 29 1 2.5253 3.0625 0.4400 30 1 3.5094 4.9181 1.6359 31 1 2.8757 5.7299 0.1650 32 1 5.5211 5.9370 0.7837 33 1 5.0239 5.6887 -0.9222 34 1 6.9700 2.6985 -1.1589 35 1 6.0859 3.9853 -2.0138 36 1 7.8578 5.1370 -0.1063 37 1 10.6654 6.8868 -0.5341 38 1 4.4361 -1.3367 -0.0122 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568136814.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:01 Heat of formation + Delta-G solvation = 9.396892 kcal Electronic energy + Delta-G solvation = -21692.158442 eV Core-core repulsion = 18344.095758 eV Total energy + Delta-G solvation = -3348.062684 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.62329 -39.84543 -37.29944 -35.17675 -34.35207 -32.52045 -31.44285 -31.19509 -28.65478 -28.06519 -25.16174 -24.52853 -22.60826 -21.90417 -21.83245 -20.42494 -19.28745 -17.69519 -17.14122 -16.96322 -16.49932 -16.18136 -15.09103 -14.43838 -14.40152 -14.18416 -14.08319 -13.55503 -13.51806 -13.23168 -13.17132 -12.86938 -12.72563 -12.51457 -12.09816 -11.54800 -11.34828 -11.32475 -10.87805 -10.77487 -10.55855 -10.39721 -10.35553 -10.01836 -9.93521 -9.62120 -9.19914 -8.76394 -8.34336 -6.82297 -5.68393 -2.96152 0.97223 1.85119 2.35604 3.02673 3.36421 3.50407 3.53977 3.55787 3.65639 4.48521 4.59417 4.68362 4.80794 4.94361 4.97630 5.05343 5.16319 5.20390 5.38866 5.48870 5.53985 5.60568 5.66053 5.75574 5.90407 6.03065 6.07221 6.17362 6.22786 6.27988 6.51172 6.63244 6.88617 7.09614 7.27258 7.70745 7.78455 8.27957 8.50824 9.61468 10.18700 10.54663 11.54757 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.029571 B = 0.003812 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.632551 B = 7343.042354 C = 7955.233960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.189 3.811 3 N -0.458 5.458 4 C -0.059 4.059 5 C 0.608 3.392 6 O -0.526 6.526 7 N -0.594 5.594 8 C 0.100 3.900 9 C -0.137 4.137 10 C -0.120 4.120 11 C 0.131 3.869 12 H 0.077 0.923 13 C 0.145 3.855 14 N -0.728 5.728 15 C -0.234 4.234 16 H 0.069 0.931 17 C -0.015 4.015 18 N -0.936 5.936 19 Si 0.908 3.092 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.286 1.286 23 C 0.008 3.992 24 O -0.199 6.199 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.102 0.898 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.035 0.965 35 H 0.020 0.980 36 H 0.383 0.617 37 H 0.255 0.745 38 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.994 -10.978 3.722 25.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.019 4.019 3 N -0.189 5.189 4 C -0.179 4.179 5 C 0.394 3.606 6 O -0.402 6.402 7 N -0.327 5.327 8 C -0.023 4.023 9 C -0.175 4.175 10 C -0.158 4.158 11 C 0.028 3.972 12 H 0.095 0.905 13 C 0.017 3.983 14 N -0.373 5.373 15 C -0.365 4.365 16 H 0.087 0.913 17 C -0.211 4.211 18 N -0.585 5.585 19 Si 0.739 3.261 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.065 4.065 24 O -0.085 6.085 25 H 0.113 0.887 26 H 0.107 0.893 27 H 0.121 0.879 28 H 0.083 0.917 29 H 0.118 0.882 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.053 0.947 35 H 0.038 0.962 36 H 0.217 0.783 37 H 0.064 0.936 38 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -22.532 -10.728 3.571 25.209 hybrid contribution 1.150 -0.372 -0.532 1.321 sum -21.382 -11.100 3.039 24.282 Atomic orbital electron populations 1.20294 0.80991 1.05270 1.04889 1.26413 0.96693 0.78531 1.00296 1.70847 1.00891 1.29336 1.17856 1.21830 0.91971 0.92976 1.11088 1.16362 0.86125 0.80583 0.77483 1.90879 1.24090 1.74464 1.50765 1.48243 1.09333 1.04193 1.70885 1.22608 0.86253 0.92360 1.01088 1.22877 0.97585 0.96334 1.00676 1.22668 0.94307 0.95519 1.03286 1.21883 0.87989 0.86866 1.00463 0.90479 1.20991 0.88485 0.95321 0.93547 1.42190 1.24327 1.50630 1.20116 1.19180 1.01121 1.20019 0.96170 0.91335 1.24715 0.98929 0.99860 0.97574 1.69652 1.31798 1.31402 1.25607 0.86248 0.81265 0.77306 0.81271 1.21348 1.21715 1.21300 1.25277 0.84664 0.95709 1.00865 1.84372 1.16793 1.37913 1.69419 0.88744 0.89256 0.87926 0.91746 0.88210 0.90987 0.90129 0.89802 0.89933 0.94710 0.96172 0.78334 0.93552 0.75245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.25 10.51 36.00 0.38 0.13 16 2 C 0.19 1.79 8.30 -13.08 -0.11 1.68 16 3 N -0.46 -5.60 8.35 -7.65 -0.06 -5.66 16 4 C -0.06 -0.83 6.82 -83.02 -0.57 -1.39 16 5 C 0.61 10.67 7.66 -12.52 -0.10 10.57 16 6 O -0.53 -10.93 15.68 5.27 0.08 -10.85 16 7 N -0.59 -9.95 3.06 -164.13 -0.50 -10.45 16 8 C 0.10 1.32 6.33 -2.41 -0.02 1.31 16 9 C -0.14 -1.65 7.10 -24.46 -0.17 -1.83 16 10 C -0.12 -1.89 6.24 -24.90 -0.16 -2.04 16 11 C 0.13 2.44 2.94 -66.95 -0.20 2.25 16 12 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 13 C 0.14 3.33 5.66 -4.05 -0.02 3.30 16 14 N -0.73 -19.65 5.42 -59.91 -0.32 -19.97 16 15 C -0.23 -6.91 9.99 -15.06 -0.15 -7.06 16 16 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 17 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 18 N -0.94 -29.08 13.06 55.49 0.72 -28.35 16 19 Si 0.91 23.27 29.55 -169.99 -5.02 18.24 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 23 C 0.01 0.09 11.95 29.96 0.36 0.45 16 24 O -0.20 -2.01 10.73 6.53 0.07 -1.94 16 25 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.10 1.24 5.86 -51.93 -0.30 0.94 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.08 1.39 7.76 -51.93 -0.40 0.99 16 34 H 0.04 0.89 6.55 -51.93 -0.34 0.55 16 35 H 0.02 0.47 8.01 -51.92 -0.42 0.05 16 36 H 0.38 10.62 7.62 -40.82 -0.31 10.31 16 37 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.23 2.03 8.06 -52.49 -0.42 1.60 16 LS Contribution 321.30 15.07 4.84 4.84 Total: -1.00 -35.70 321.30 -6.17 -41.87 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -5.12 Total: 5.46 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: -0.84 Total: 6.81 kcal Atomic # 7 Polarization: -64.27 SS G_CDS: -0.17 Total: -64.44 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.15 Total: -12.79 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -5.02 Total: 18.24 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -35.70 -6.17 -41.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568136814.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.267 kcal (2) G-P(sol) polarization free energy of solvation -35.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds