Wall clock time and date at job start Tue Mar 31 2020 02:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35313 * 128.04397 * 2 1 4 4 O 1.34013 * 106.66977 * 180.23660 * 3 2 1 5 5 N 1.20911 * 111.84881 * 359.74772 * 4 3 2 6 6 C 1.30986 * 111.43283 * 0.02562 * 5 4 3 7 7 C 1.48332 * 126.93299 * 179.97438 * 6 5 4 8 8 O 1.21504 * 119.99945 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00278 * 0.02562 * 7 6 5 10 10 C 1.46500 * 120.00075 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47092 * 324.99806 * 10 9 7 12 12 C 1.53000 * 109.47023 * 204.99547 * 10 9 7 13 13 N 1.46507 * 109.46803 * 55.00453 * 12 10 9 14 14 C 1.36934 * 119.99498 * 179.97438 * 13 12 10 15 15 H 1.07999 * 120.00844 * 0.02562 * 14 13 12 16 16 C 1.38814 * 119.99803 * 179.97438 * 14 13 12 17 17 N 1.31613 * 120.00430 * 180.02562 * 16 14 13 18 18 Si 1.86806 * 119.99966 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.46849 * 89.99628 * 18 16 14 20 20 H 1.48495 * 109.47013 * 209.99719 * 18 16 14 21 21 H 1.48503 * 109.47112 * 329.99973 * 18 16 14 22 22 C 1.52997 * 109.47007 * 84.99755 * 10 9 7 23 23 C 1.52999 * 117.50101 * 8.75019 * 22 10 9 24 24 C 1.52996 * 117.50050 * 300.08878 * 22 10 9 25 25 H 1.09000 * 109.47310 * 270.16488 * 1 2 3 26 26 H 1.09001 * 109.46887 * 30.16292 * 1 2 3 27 27 H 1.09000 * 109.47425 * 150.16140 * 1 2 3 28 28 H 1.07995 * 126.66359 * 359.95094 * 3 2 1 29 29 H 0.96997 * 119.99651 * 0.02562 * 9 7 6 30 30 H 1.09008 * 109.47142 * 174.99638 * 12 10 9 31 31 H 1.08990 * 109.47170 * 295.00136 * 12 10 9 32 32 H 0.96994 * 119.99737 * 359.97438 * 13 12 10 33 33 H 0.96998 * 120.00448 * 180.02562 * 17 16 14 34 34 H 1.09002 * 115.54867 * 154.41632 * 22 10 9 35 35 H 1.08998 * 117.49862 * 359.97438 * 23 22 10 36 36 H 1.09000 * 117.50295 * 145.02180 * 23 22 10 37 37 H 1.09005 * 117.49713 * 214.98330 * 24 22 10 38 38 H 1.08996 * 117.49883 * 359.97027 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3409 1.0656 0.0000 4 8 3.5888 0.5772 -0.0053 5 7 3.5988 -0.6318 -0.0035 6 6 2.3836 -1.1206 0.0026 7 6 1.9990 -2.5532 0.0060 8 8 0.8253 -2.8671 0.0113 9 7 2.9516 -3.5066 0.0033 10 6 2.5718 -4.9216 0.0061 11 1 1.6668 -5.0536 0.5991 12 6 3.7046 -5.7525 0.6120 13 7 4.0334 -5.2333 1.9420 14 6 5.0239 -5.8228 2.6813 15 1 5.5630 -6.6701 2.2839 16 6 5.3360 -5.3306 3.9412 17 7 6.2883 -5.8967 4.6516 18 14 4.4041 -3.8646 4.6284 19 1 3.2165 -4.3419 5.3815 20 1 5.2913 -3.0964 5.5381 21 1 3.9636 -2.9904 3.5117 22 6 2.3126 -5.3828 -1.4295 23 6 2.6800 -4.4181 -2.5588 24 6 1.2099 -4.6680 -2.2130 25 1 -0.3634 0.0030 1.0276 26 1 -0.3633 0.8885 -0.5164 27 1 -0.3634 -0.8914 -0.5113 28 1 2.0560 2.1074 -0.0007 29 1 3.8886 -3.2560 -0.0005 30 1 3.3878 -6.7921 0.6960 31 1 4.5835 -5.6911 -0.0295 32 1 3.5495 -4.4722 2.2987 33 1 6.5061 -5.5531 5.5321 34 1 2.4506 -6.4484 -1.6131 35 1 3.1059 -3.4546 -2.2789 36 1 3.0592 -4.8489 -3.4854 37 1 0.6226 -5.2632 -2.9123 38 1 0.6687 -3.8694 -1.7056 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569324719.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:50 Heat of formation + Delta-G solvation = 71.020473 kcal Electronic energy + Delta-G solvation = -22208.604988 eV Core-core repulsion = 18863.214503 eV Total energy + Delta-G solvation = -3345.390485 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.21992 -40.15972 -37.37559 -35.12522 -34.78752 -33.64239 -32.39441 -31.29919 -28.83582 -28.24692 -24.94071 -23.86435 -22.31225 -21.82143 -21.35587 -20.98755 -19.82014 -18.52263 -17.92353 -17.63578 -16.59794 -16.17217 -15.88238 -14.85848 -14.51816 -14.37249 -13.88823 -13.77612 -13.48169 -13.42087 -13.25993 -12.81025 -12.53586 -12.27594 -11.92014 -11.66209 -11.47136 -11.40581 -11.09260 -10.89534 -10.40532 -10.35412 -10.21586 -10.02197 -9.77289 -9.61937 -9.61488 -8.98876 -8.90356 -7.29567 -5.80385 -3.16735 1.04785 1.51425 2.87498 3.06218 3.14408 3.35630 3.39591 3.43306 3.85913 3.94570 4.44598 4.56362 4.67613 4.73473 4.90296 5.04924 5.08112 5.23246 5.37184 5.44631 5.45636 5.48495 5.56675 5.62823 5.74067 5.77851 5.81316 6.01210 6.05633 6.17078 6.31591 6.37917 6.53272 6.69822 7.47145 7.89882 7.94146 8.14086 8.38068 9.16129 9.88610 10.07356 11.37737 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.013662 B = 0.006759 C = 0.005088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.013105 B = 4141.925668 C = 5501.701009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.151 4.151 3 C -0.072 4.072 4 O 0.126 5.874 5 N -0.324 5.324 6 C -0.030 4.030 7 C 0.598 3.402 8 O -0.522 6.522 9 N -0.695 5.695 10 C 0.164 3.836 11 H 0.095 0.905 12 C 0.152 3.848 13 N -0.755 5.755 14 C -0.246 4.246 15 H 0.092 0.908 16 C 0.009 3.991 17 N -0.931 5.931 18 Si 0.882 3.118 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.280 1.280 22 C -0.160 4.160 23 C -0.178 4.178 24 C -0.186 4.186 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.222 0.778 29 H 0.412 0.588 30 H 0.047 0.953 31 H 0.036 0.964 32 H 0.362 0.638 33 H 0.260 0.740 34 H 0.115 0.885 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.258 12.977 -14.238 22.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.156 4.156 3 C -0.153 4.153 4 O 0.049 5.951 5 N -0.023 5.023 6 C -0.190 4.190 7 C 0.382 3.618 8 O -0.398 6.398 9 N -0.347 5.347 10 C 0.059 3.941 11 H 0.113 0.887 12 C 0.025 3.975 13 N -0.401 5.401 14 C -0.376 4.376 15 H 0.110 0.890 16 C -0.187 4.187 17 N -0.579 5.579 18 Si 0.712 3.288 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.206 1.206 22 C -0.180 4.180 23 C -0.215 4.215 24 C -0.223 4.223 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.106 0.894 28 H 0.239 0.761 29 H 0.248 0.752 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.195 0.805 33 H 0.070 0.930 34 H 0.133 0.867 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.695 11.920 -14.155 21.374 hybrid contribution -0.798 1.398 0.670 1.744 sum -11.493 13.319 -13.486 22.166 Atomic orbital electron populations 1.20211 0.86577 1.03747 1.03249 1.21364 0.99108 0.90097 1.05004 1.25776 0.82528 1.01282 1.05700 1.84794 1.29431 1.15270 1.65571 1.74240 1.21594 0.91538 1.14954 1.23531 0.89536 0.97327 1.08559 1.16858 0.85781 0.82331 0.76802 1.90696 1.17387 1.81519 1.50200 1.45964 1.10130 1.06196 1.72364 1.20942 1.00080 0.78745 0.94297 0.88662 1.20910 0.93947 0.95651 0.87023 1.42697 1.44053 1.37702 1.15692 1.19030 1.09771 1.11716 0.97071 0.89003 1.24637 0.98360 0.98843 0.96888 1.69688 1.32744 1.42930 1.12521 0.86593 0.79656 0.83659 0.78869 1.21028 1.21607 1.20619 1.22668 1.04705 0.98409 0.92181 1.22903 0.98752 1.00928 0.98899 1.23334 0.91521 1.04265 1.03156 0.90549 0.91127 0.89405 0.76112 0.75203 0.93547 0.94614 0.80508 0.92989 0.86720 0.89267 0.89175 0.89436 0.86781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.01 36.00 0.36 -0.41 16 2 C -0.15 -1.75 6.34 -104.12 -0.66 -2.41 16 3 C -0.07 -0.65 12.24 29.69 0.36 -0.28 16 4 O 0.13 1.52 11.18 17.25 0.19 1.71 16 5 N -0.32 -4.84 11.84 33.29 0.39 -4.44 16 6 C -0.03 -0.45 7.19 -82.53 -0.59 -1.04 16 7 C 0.60 9.80 6.68 -12.11 -0.08 9.72 16 8 O -0.52 -9.01 12.37 5.36 0.07 -8.94 16 9 N -0.70 -11.38 3.05 -54.59 -0.17 -11.55 16 10 C 0.16 2.65 2.59 -67.93 -0.18 2.48 16 11 H 0.10 1.67 7.58 -51.93 -0.39 1.28 16 12 C 0.15 2.87 5.80 -4.04 -0.02 2.85 16 13 N -0.76 -17.97 5.24 -59.90 -0.31 -18.28 16 14 C -0.25 -6.98 10.47 -15.06 -0.16 -7.14 16 15 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 16 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 17 N -0.93 -29.44 13.97 55.49 0.78 -28.66 16 18 Si 0.88 22.85 27.74 -169.99 -4.71 18.13 16 19 H -0.28 -7.34 7.11 56.52 0.40 -6.93 16 20 H -0.29 -7.56 7.11 56.52 0.40 -7.15 16 21 H -0.28 -7.00 6.52 56.52 0.37 -6.63 16 22 C -0.16 -2.18 5.70 -90.62 -0.52 -2.70 16 23 C -0.18 -2.27 9.74 -26.69 -0.26 -2.53 16 24 C -0.19 -2.44 9.82 -26.70 -0.26 -2.70 16 25 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.09 0.98 6.89 -51.93 -0.36 0.62 16 28 H 0.22 0.83 8.06 -52.49 -0.42 0.41 16 29 H 0.41 6.91 8.36 -40.82 -0.34 6.57 16 30 H 0.05 0.87 8.14 -51.92 -0.42 0.44 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.36 8.70 5.20 -40.82 -0.21 8.49 16 33 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 34 H 0.11 1.41 8.11 -51.93 -0.42 0.99 16 35 H 0.09 1.22 6.67 -51.93 -0.35 0.88 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.11 1.70 5.01 -51.93 -0.26 1.44 16 LS Contribution 319.32 15.07 4.81 4.81 Total: -1.00 -33.31 319.32 -5.94 -39.25 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -4.88 Total: 11.98 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -2.10 Total: -4.01 kcal Atomic # 7 Polarization: -63.63 SS G_CDS: 0.69 Total: -62.94 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: 0.26 Total: -7.23 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.71 Total: 18.13 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.31 -5.94 -39.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569324719.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.269 kcal (2) G-P(sol) polarization free energy of solvation -33.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds