Wall clock time and date at job start Tue Mar 31 2020 02:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38382 * 120.00117 * 2 1 4 4 N 1.32122 * 120.00057 * 179.72240 * 3 2 1 5 5 C 1.32161 * 119.99645 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99595 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.47284 * 214.99247 * 6 5 4 8 8 C 1.53002 * 109.46935 * 95.00028 * 6 5 4 9 9 N 1.46492 * 109.47567 * 334.99860 * 6 5 4 10 10 C 1.36937 * 119.99865 * 60.00298 * 9 6 5 11 11 H 1.08006 * 120.00108 * 328.51783 * 10 9 6 12 12 C 1.38810 * 120.00297 * 148.52678 * 10 9 6 13 13 N 1.31623 * 119.99680 * 335.44627 * 12 10 9 14 14 Si 1.86803 * 120.00245 * 155.44904 * 12 10 9 15 15 H 1.48497 * 109.47079 * 60.00052 * 14 12 10 16 16 H 1.48501 * 109.46923 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46948 * 299.99386 * 14 12 10 18 18 C 1.46501 * 120.00135 * 239.99789 * 9 6 5 19 19 C 1.53003 * 109.46774 * 84.51241 * 18 9 6 20 20 C 1.50703 * 109.46880 * 179.97438 * 19 18 9 21 21 O 1.20824 * 120.00059 * 0.02562 * 20 19 18 22 22 O 1.34222 * 119.99810 * 179.97438 * 20 19 18 23 23 C 1.38345 * 120.00221 * 359.97438 * 5 4 3 24 24 N 1.32126 * 119.99676 * 179.72671 * 2 1 3 25 25 H 1.08999 * 109.46905 * 89.99629 * 1 2 3 26 26 H 1.09001 * 109.46824 * 210.00059 * 1 2 3 27 27 H 1.09007 * 109.46767 * 329.99474 * 1 2 3 28 28 H 1.08004 * 120.00303 * 359.70201 * 3 2 1 29 29 H 1.08999 * 109.47084 * 179.97438 * 8 6 5 30 30 H 1.09002 * 109.47396 * 299.99624 * 8 6 5 31 31 H 1.09004 * 109.47200 * 59.99655 * 8 6 5 32 32 H 0.97003 * 119.99943 * 180.02562 * 13 12 10 33 33 H 1.09004 * 109.47299 * 204.50800 * 18 9 6 34 34 H 1.08998 * 109.47417 * 324.51212 * 18 9 6 35 35 H 1.08997 * 109.47181 * 299.99808 * 19 18 9 36 36 H 1.09003 * 109.47265 * 60.00289 * 19 18 9 37 37 H 0.96704 * 117.00127 * 180.02562 * 22 20 19 38 38 H 1.07997 * 119.99717 * 180.02562 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1990 1.1984 0.0000 4 7 3.5202 1.1984 0.0055 5 6 4.1809 0.0538 0.0106 6 6 5.6879 0.0538 0.0175 7 1 6.0540 -0.7891 -0.5687 8 6 6.1913 -0.0694 1.4571 9 7 6.1790 1.3045 -0.5662 10 6 5.8457 2.5037 0.0047 11 1 4.8958 2.6178 0.5059 12 6 6.7284 3.5730 -0.0610 13 7 8.0174 3.3538 -0.2124 14 14 6.0871 5.3229 0.0655 15 1 5.3994 5.5050 1.3690 16 1 7.2229 6.2745 -0.0316 17 1 5.1293 5.5801 -1.0398 18 6 7.0268 1.2722 -1.7605 19 6 6.1460 1.1941 -3.0091 20 6 7.0181 1.1616 -4.2378 21 8 8.2207 1.1968 -4.1261 22 8 6.4589 1.0925 -5.4560 23 6 3.4892 -1.1443 0.0106 24 7 2.1677 -1.1443 0.0055 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5140 28 1 1.6591 2.1338 -0.0049 29 1 7.2813 -0.0698 1.4621 30 1 5.8253 0.7735 2.0434 31 1 5.8259 -1.0000 1.8914 32 1 8.6344 4.1009 -0.2579 33 1 7.6336 2.1770 -1.8000 34 1 7.6783 0.3993 -1.7202 35 1 5.5393 0.2895 -2.9697 36 1 5.4946 2.0671 -3.0495 37 1 7.0590 1.0736 -6.2141 38 1 4.0292 -2.0795 0.0151 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600619063.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:45 Heat of formation + Delta-G solvation = -40.896110 kcal Electronic energy + Delta-G solvation = -22278.079612 eV Core-core repulsion = 18927.836060 eV Total energy + Delta-G solvation = -3350.243552 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.94205 -41.15693 -38.29466 -37.04598 -35.29659 -34.30684 -33.30073 -32.61883 -30.18675 -28.25706 -26.70956 -25.39884 -24.89330 -23.58941 -21.95437 -21.32344 -19.16388 -18.52286 -18.42298 -17.44276 -17.09133 -16.69915 -16.54774 -16.34861 -15.89541 -15.44118 -15.19037 -14.65196 -14.11499 -13.96001 -13.93923 -13.53006 -13.39211 -13.19109 -13.07835 -12.81461 -12.69700 -12.53551 -12.50540 -12.43200 -12.19423 -11.89751 -11.74892 -11.66511 -11.56057 -11.33271 -10.41145 -9.74109 -9.68990 -8.53042 -7.71353 -5.19324 0.00842 0.41750 1.27041 1.48464 1.51990 1.57273 2.19652 2.62044 2.92015 3.27529 3.39332 3.47283 3.59995 3.84831 4.01941 4.20930 4.31540 4.36124 4.44760 4.57031 4.63008 4.69485 4.73061 4.84201 4.85133 4.96191 5.02186 5.14947 5.22291 5.26775 5.54074 5.62382 5.65587 5.86988 6.09541 6.55827 6.66420 7.06705 7.12943 7.32062 7.97878 8.46205 9.28941 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.012100 B = 0.007232 C = 0.005730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.434557 B = 3870.674244 C = 4885.454801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.057 3.943 3 C 0.033 3.967 4 N -0.424 5.424 5 C 0.067 3.933 6 C 0.207 3.793 7 H 0.094 0.906 8 C -0.133 4.133 9 N -0.576 5.576 10 C -0.216 4.216 11 H 0.093 0.907 12 C -0.056 4.056 13 N -0.924 5.924 14 Si 0.941 3.059 15 H -0.280 1.280 16 H -0.305 1.305 17 H -0.284 1.284 18 C 0.157 3.843 19 C -0.117 4.117 20 C 0.488 3.512 21 O -0.549 6.549 22 O -0.514 6.514 23 C 0.048 3.952 24 N -0.458 5.458 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.096 0.904 28 H 0.179 0.821 29 H 0.045 0.955 30 H 0.032 0.968 31 H 0.072 0.928 32 H 0.242 0.758 33 H 0.077 0.923 34 H 0.029 0.971 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.423 0.577 38 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.228 -8.636 -3.545 15.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.084 4.084 3 C -0.127 4.127 4 N -0.138 5.138 5 C -0.075 4.075 6 C 0.099 3.901 7 H 0.112 0.888 8 C -0.192 4.192 9 N -0.294 5.294 10 C -0.347 4.347 11 H 0.110 0.890 12 C -0.250 4.250 13 N -0.571 5.571 14 Si 0.771 3.229 15 H -0.206 1.206 16 H -0.232 1.232 17 H -0.210 1.210 18 C 0.030 3.970 19 C -0.158 4.158 20 C 0.332 3.668 21 O -0.440 6.440 22 O -0.328 6.328 23 C -0.112 4.112 24 N -0.173 5.173 25 H 0.108 0.892 26 H 0.097 0.903 27 H 0.114 0.886 28 H 0.196 0.804 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.091 0.909 32 H 0.051 0.949 33 H 0.095 0.905 34 H 0.047 0.953 35 H 0.120 0.880 36 H 0.107 0.893 37 H 0.284 0.716 38 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -12.032 -8.498 -3.165 15.067 hybrid contribution 0.696 1.328 -0.478 1.574 sum -11.336 -7.170 -3.643 13.899 Atomic orbital electron populations 1.20711 0.85501 1.04579 1.04122 1.22781 0.99833 0.89392 0.96397 1.24192 0.91050 1.00132 0.97345 1.68749 1.08302 1.29928 1.06790 1.23323 0.99374 0.89546 0.95217 1.19511 0.85881 0.89912 0.94843 0.88836 1.21940 1.00450 1.00489 0.96321 1.43976 1.57695 1.01512 1.26205 1.19777 0.98590 0.87201 1.29085 0.88968 1.25644 0.94745 1.01360 1.03286 1.70161 1.01488 1.30027 1.55428 0.85730 0.76719 0.82361 0.78069 1.20565 1.23243 1.21027 1.20657 0.91365 1.02088 0.82895 1.22029 0.99256 1.04537 0.89943 1.23838 0.87577 0.70214 0.85191 1.90695 1.18238 1.47364 1.87699 1.84542 1.46075 1.85100 1.17061 1.23793 0.90580 0.99581 0.97255 1.68322 1.08859 1.29860 1.10307 0.89199 0.90274 0.88556 0.80401 0.93597 0.94834 0.90938 0.94860 0.90496 0.95286 0.88026 0.89280 0.71616 0.79405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.51 10.19 71.24 0.73 -0.78 16 2 C 0.06 1.46 6.79 42.55 0.29 1.75 16 3 C 0.03 0.99 10.88 84.68 0.92 1.91 16 4 N -0.42 -15.75 7.07 -183.29 -1.30 -17.05 16 5 C 0.07 2.30 5.87 42.53 0.25 2.55 16 6 C 0.21 7.66 3.03 44.25 0.13 7.79 16 7 H 0.09 3.00 7.84 -2.39 -0.02 2.98 16 8 C -0.13 -4.83 9.14 71.98 0.66 -4.17 16 9 N -0.58 -26.34 2.36 -682.21 -1.61 -27.95 16 10 C -0.22 -11.12 7.75 84.03 0.65 -10.47 16 11 H 0.09 4.79 5.73 -2.91 -0.02 4.77 16 12 C -0.06 -3.06 4.88 84.86 0.41 -2.65 16 13 N -0.92 -54.46 11.32 21.65 0.25 -54.22 16 14 Si 0.94 45.44 29.62 68.60 2.03 47.47 16 15 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 16 H -0.31 -15.16 7.11 99.48 0.71 -14.45 16 17 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 18 C 0.16 7.22 4.48 86.38 0.39 7.60 16 19 C -0.12 -4.44 6.13 29.85 0.18 -4.25 16 20 C 0.49 17.41 8.33 71.24 0.59 18.00 16 21 O -0.55 -23.42 16.74 21.97 0.37 -23.05 16 22 O -0.51 -13.77 13.42 -51.34 -0.69 -14.46 16 23 C 0.05 1.36 10.90 84.67 0.92 2.28 16 24 N -0.46 -12.98 10.42 -183.29 -1.91 -14.89 16 25 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.10 1.19 8.09 -2.38 -0.02 1.17 16 28 H 0.18 4.27 8.06 -2.91 -0.02 4.24 16 29 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.03 1.39 7.66 -2.39 -0.02 1.37 16 31 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 32 H 0.24 14.22 8.31 -92.71 -0.77 13.45 16 33 H 0.08 4.27 5.21 -2.38 -0.01 4.25 16 34 H 0.03 1.32 8.00 -2.39 -0.02 1.30 16 35 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 36 H 0.09 3.58 8.14 -2.39 -0.02 3.56 16 37 H 0.42 7.12 9.10 -74.05 -0.67 6.44 16 38 H 0.19 4.06 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -70.62 325.58 3.68 -66.95 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.41 Total: 17.64 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: 6.13 Total: 19.56 kcal Atomic # 7 Polarization: -109.54 SS G_CDS: -4.57 Total: -114.12 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: -0.32 Total: -37.50 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -70.62 3.68 -66.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600619063.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.051 kcal (2) G-P(sol) polarization free energy of solvation -70.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds