Wall clock time and date at job start Tue Mar 31 2020 00:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35246 * 126.07144 * 2 1 4 4 C 1.40426 * 107.86323 * 180.17413 * 3 2 1 5 5 N 1.39985 * 125.97477 * 179.82808 * 4 3 2 6 6 C 1.46499 * 120.00328 * 359.71514 * 5 4 3 7 7 H 1.09004 * 109.47039 * 35.00178 * 6 5 4 8 8 C 1.50697 * 109.47547 * 154.99994 * 6 5 4 9 9 O 1.20833 * 119.99747 * 0.02562 * 8 6 5 10 10 O 1.34230 * 120.00262 * 179.72203 * 8 6 5 11 11 C 1.53006 * 109.47323 * 275.00466 * 6 5 4 12 12 C 1.52997 * 117.49693 * 248.62075 * 11 6 5 13 13 C 1.53001 * 60.00171 * 252.50933 * 12 11 6 14 14 N 1.31221 * 108.04611 * 359.56617 * 4 3 2 15 15 N 1.34954 * 126.06549 * 179.69664 * 2 1 3 16 16 C 1.46505 * 125.97230 * 359.97438 * 15 2 1 17 17 C 1.50697 * 109.47070 * 269.97058 * 16 15 2 18 18 H 1.07996 * 120.00030 * 0.02562 * 17 16 15 19 19 C 1.37882 * 120.00093 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99646 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 119.99986 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47114 * 60.00440 * 21 19 17 23 23 H 1.48501 * 109.47133 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47598 * 300.00092 * 21 19 17 25 25 H 1.09000 * 109.47652 * 270.30155 * 1 2 3 26 26 H 1.09001 * 109.46852 * 30.29940 * 1 2 3 27 27 H 1.08999 * 109.47322 * 150.29592 * 1 2 3 28 28 H 1.08005 * 126.07072 * 0.03722 * 3 2 1 29 29 H 0.97002 * 119.99796 * 179.72356 * 5 4 3 30 30 H 0.96699 * 116.99771 * 180.27188 * 10 8 6 31 31 H 1.08997 * 115.54783 * 34.32709 * 11 6 5 32 32 H 1.09005 * 117.50108 * 359.97438 * 12 11 6 33 33 H 1.08998 * 117.49962 * 145.01544 * 12 11 6 34 34 H 1.08997 * 117.49736 * 252.51425 * 13 12 11 35 35 H 1.08991 * 117.51659 * 107.47794 * 13 12 11 36 36 H 1.08991 * 109.47030 * 29.97517 * 16 15 2 37 37 H 1.09005 * 109.46692 * 149.97058 * 16 15 2 38 38 H 0.97000 * 119.99710 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6373 0.6544 -0.0041 5 7 4.7724 1.4736 -0.0088 6 6 4.6240 2.9310 -0.0161 7 1 3.7500 3.2102 0.5724 8 6 5.8544 3.5643 0.5805 9 8 6.7624 2.8695 0.9713 10 8 5.9442 4.9005 0.6722 11 6 4.4464 3.4184 -1.4556 12 6 5.5840 4.2367 -2.0697 13 6 4.2743 4.9226 -1.6760 14 7 3.6336 -0.6578 0.0030 15 7 2.3015 -1.0909 0.0058 16 6 1.8497 -2.4845 0.0137 17 6 1.6960 -2.9546 1.4372 18 1 1.9127 -2.2825 2.2542 19 6 1.2787 -4.2430 1.6965 20 7 1.0153 -5.0616 0.7015 21 14 1.0889 -4.8259 3.4609 22 1 0.0885 -3.9778 4.1575 23 1 0.6308 -6.2385 3.4690 24 1 2.3956 -4.7248 4.1590 25 1 -0.3634 0.0054 1.0276 26 1 -0.3633 0.8873 -0.5185 27 1 -0.3634 -0.8926 -0.5092 28 1 1.9721 2.1212 0.0006 29 1 5.6573 1.0762 -0.0073 30 1 6.7544 5.2605 1.0584 31 1 3.8962 2.7469 -2.1147 32 1 6.4587 4.4282 -1.4481 33 1 5.7825 4.1036 -3.1331 34 1 3.6111 5.2407 -2.4804 35 1 4.2871 5.5649 -0.7955 36 1 0.8907 -2.5584 -0.4990 37 1 2.5839 -3.1073 -0.4975 38 1 0.7213 -5.9678 0.8839 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605213352.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:09 Heat of formation + Delta-G solvation = 16.034297 kcal Electronic energy + Delta-G solvation = -21481.940441 eV Core-core repulsion = 18134.165577 eV Total energy + Delta-G solvation = -3347.774864 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.95960 -40.24148 -37.56096 -36.56141 -34.85382 -33.28984 -31.52484 -30.76945 -27.98170 -26.52958 -25.87446 -23.16592 -22.88593 -22.48804 -20.68081 -19.51152 -19.18105 -18.22509 -16.96012 -16.64502 -16.56611 -16.04248 -15.20552 -14.82462 -14.46515 -14.38020 -14.05186 -13.92479 -13.41472 -12.86539 -12.48314 -12.45754 -12.21277 -12.10131 -11.69181 -11.58643 -11.51319 -11.36931 -11.14157 -10.94351 -10.76883 -10.61937 -10.27033 -10.18453 -10.04271 -9.61166 -9.26677 -8.60442 -7.80444 -7.11712 -6.21314 -4.29057 1.93927 2.45403 2.86718 3.25520 3.27524 3.29381 3.35275 3.62966 3.70565 4.08833 4.34154 4.49071 4.68712 4.85448 4.91652 5.11822 5.22712 5.31106 5.39611 5.48853 5.72769 5.75983 5.93142 5.99027 6.06155 6.07197 6.18547 6.21456 6.32031 6.63231 6.84464 7.05854 7.18050 7.54858 7.66823 7.70756 7.93907 8.09025 8.16108 8.75731 8.87711 9.36996 10.85425 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.027564 B = 0.003804 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.574255 B = 7358.318430 C = 7833.318336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.108 3.892 3 C -0.337 4.337 4 C 0.314 3.686 5 N -0.711 5.711 6 C 0.217 3.783 7 H 0.118 0.882 8 C 0.480 3.520 9 O -0.504 6.504 10 O -0.511 6.511 11 C -0.165 4.165 12 C -0.183 4.183 13 C -0.165 4.165 14 N -0.340 5.340 15 N -0.323 5.323 16 C 0.260 3.740 17 C -0.535 4.535 18 H 0.063 0.937 19 C 0.065 3.935 20 N -0.893 5.893 21 Si 0.906 3.094 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.275 1.275 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.132 0.868 29 H 0.408 0.592 30 H 0.409 0.591 31 H 0.125 0.875 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.627 20.266 -3.983 20.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.025 4.025 3 C -0.370 4.370 4 C 0.058 3.942 5 N -0.355 5.355 6 C 0.108 3.892 7 H 0.136 0.864 8 C 0.321 3.679 9 O -0.390 6.390 10 O -0.323 6.323 11 C -0.185 4.185 12 C -0.220 4.220 13 C -0.203 4.203 14 N -0.171 5.171 15 N -0.103 5.103 16 C 0.142 3.858 17 C -0.573 4.573 18 H 0.081 0.919 19 C -0.138 4.138 20 N -0.531 5.531 21 Si 0.733 3.267 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.200 1.200 25 H 0.096 0.904 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.150 0.850 29 H 0.245 0.755 30 H 0.269 0.731 31 H 0.143 0.857 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.125 0.875 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.021 18.598 -4.072 19.459 hybrid contribution 0.394 0.326 1.224 1.326 sum 4.415 18.924 -2.848 19.640 Atomic orbital electron populations 1.20350 0.88186 1.02774 1.03121 1.20862 0.94554 0.87348 0.99727 1.20453 0.90445 0.98319 1.27749 1.18874 0.86747 0.89595 0.98954 1.42928 1.05768 1.00622 1.86185 1.19523 0.93522 0.81541 0.94603 0.86442 1.23508 0.88895 0.80441 0.75084 1.90749 1.39870 1.63341 1.45062 1.84573 1.47453 1.23417 1.76888 1.22832 1.04258 0.95009 0.96376 1.23109 0.92743 1.04561 1.01601 1.23029 0.99435 0.93999 1.03807 1.77405 0.98917 1.08598 1.32211 1.48943 1.01273 1.07501 1.52590 1.19620 0.95804 0.71613 0.98758 1.21295 1.46618 0.97950 0.91444 0.91859 1.24920 0.94745 0.96053 0.98064 1.69910 1.45018 1.06970 1.31189 0.86424 0.78786 0.77629 0.83892 1.19985 1.20984 1.19993 0.90450 0.90975 0.90852 0.85041 0.75463 0.73143 0.85748 0.89094 0.88653 0.88505 0.87486 0.93024 0.93117 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.37 10.11 36.01 0.36 -1.01 16 2 C 0.11 2.16 6.92 -82.28 -0.57 1.59 16 3 C -0.34 -6.09 9.83 -39.82 -0.39 -6.48 16 4 C 0.31 6.16 8.14 -154.55 -1.26 4.91 16 5 N -0.71 -11.47 5.16 -54.70 -0.28 -11.75 16 6 C 0.22 2.64 2.89 -69.08 -0.20 2.44 16 7 H 0.12 1.35 7.13 -51.93 -0.37 0.98 16 8 C 0.48 5.48 6.18 36.00 0.22 5.70 16 9 O -0.50 -7.44 16.60 -18.76 -0.31 -7.75 16 10 O -0.51 -3.83 10.29 -39.26 -0.40 -4.23 16 11 C -0.16 -1.72 6.00 -90.62 -0.54 -2.27 16 12 C -0.18 -1.66 9.54 -26.73 -0.25 -1.92 16 13 C -0.17 -1.34 9.77 -26.73 -0.26 -1.60 16 14 N -0.34 -8.04 12.59 31.41 0.40 -7.65 16 15 N -0.32 -7.62 3.59 -58.33 -0.21 -7.83 16 16 C 0.26 6.73 5.99 -5.19 -0.03 6.70 16 17 C -0.53 -14.89 9.39 -34.44 -0.32 -15.21 16 18 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 19 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 20 N -0.89 -25.32 13.29 55.43 0.74 -24.59 16 21 Si 0.91 21.34 29.54 -169.99 -5.02 16.32 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 24 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 25 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.07 1.21 7.07 -51.93 -0.37 0.84 16 28 H 0.13 1.94 7.44 -52.48 -0.39 1.55 16 29 H 0.41 6.88 7.92 -40.82 -0.32 6.55 16 30 H 0.41 1.43 9.10 45.56 0.41 1.84 16 31 H 0.12 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.09 0.83 5.84 -51.93 -0.30 0.52 16 33 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.11 0.81 6.84 -51.93 -0.36 0.46 16 36 H 0.05 1.31 7.04 -51.93 -0.37 0.95 16 37 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 325.94 15.07 4.91 4.91 Total: -1.00 -32.65 325.94 -7.67 -40.32 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -4.14 Total: 7.70 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -3.34 Total: -5.45 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: 0.64 Total: -51.81 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: -0.72 Total: -11.98 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.65 -7.67 -40.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605213352.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.358 kcal (2) G-P(sol) polarization free energy of solvation -32.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds